Don't be confused by '=' in output from "uname -a".
PR pkg/45814, also reported upstream at
<https://rt.perl.org/rt3/Public/Bug/Display.html?id=116523>.

Not bumping PKGREVISION because there should be no change in
the resulting package, on systems where the build was successful.

(apb)

Updated emulators/qemu to 1.3.0

(ryoon)

Update to 1.3.0

Changelog:
QMP
    The sendkey monitor command is now available via QMP.

All targets
    QEMU can now use the Linux VFIO driver to assign PCI devices to a virtual machine.
    The bus master configuration bit for PCI devices is now emulated. PCI devices cannot anymore perform DMA without setting the bit before. This may break firmware that wasn't tested on real hardware.

MIPS
    Loongson Multimedia Instructions are now implemented.
    MIPS32/64 ASE DSP Instructions are now implemented.

x86
    The TSC frequency can be larger than 2.147 GHz.
    Configuration files do not support anymore the cpudef section.
    TCG (emulation) supports the SMEP (Supervisor Mode Execution Prevention) and SMAP (Supervisor Mode Access Prevention) features of newer x86 processors.
    CPUID/models?
    The "cpudef" config file section is now deprecated and will be removed in v1.4.
    New CPU models: "Haswell" (new features: fma, pcid, movbe, fsgsbase, bmi1, hle, avx2, smep, bmi2, erms, invpcid, rtm) and "Opteron_G5" (new features: tbm, f16c, fma)
    Added Intel Q35 chipset as a new machine type, '--machine q35'. Adds PCIe support. Requires an updated SeaBIOS (bios.bin), and '-acpitable file=/seabios-path/q35-acpi-dsdt.aml' to run.

Xtensa
    Single precision floating point instructions are now implemented.

Device emulation
    Emulation of the MC146818 real-time clock (used on PC and several other boards) does not wake up QEMU anymore every second to update the clock.
    USB3 has been vastly improved, including support for USB mass storage devices and MSI/MSI-X support for the XHCI controller.
    USB redirection now supports live migration.
    Several bugs in the AHCI controller were fixed to support recent Windows versions.
    ivshmem now has a "use64" property which will make the ivshmem driver register a 64-bit memory BAR.
    New paravirtualized hardware random number generator device, VirtIORNG.

Network devices
    Some problems were fixed leading to bad receive performance of E1000 and Xen network cards.

Block devices
    qemu-img now can output information in JSON format using "qemu-img info --output=json".
    Glusterfs volumes can be accessed with "gluster://" URIs for "-drive" and similar options. Optionally the transport can also be specified, as in "gluster+tcp://" (other supported transports are "unix" and "rdma").
    Options on the QMP streaming command direct the job to pause on encountering errors, or to ignore them altogether.
    A new block job is supported: live block commit (also known as "snapshot deletion") moves data from an image to another in the backing file chain. With the current implementation of QEMU 1.3, the "source" image may not be the active one.
    A new block job is supported: live disk mirroring (also known as "storage migration") moves data from an image to another. A new command "block-job-complete" is used to switch the VM to use the destination image exclusively.
    Block jobs can now be paused and resumed from the monitor.
    NBD block devices can now be specified using URI syntax. "nbd://" defaults to TCP transport, while "nbd+tcp://" and "nbd+unix://" can be used (similar to Gluster) to specify it. URI syntax simplifies access to named exports; the export name is simply the "path" component of the URI.
    NBD connections to Unix sockets support relative paths.
    QEMU embeds an NBD server, accessible via the monitor. The NBD server allows live access to the image seen by the VM. Note that the embedded server uses "named exports", which QEMU can access using the "nbd://host:port/name" syntax.
    Windows hosts support asynchronous disk I/O.

Live Migration, Save/Restore
    The "stop" and "cont" commands have new semantics on the destination machine during migration. Previously, the outcome depended on whether the commands were issued before or after the source connected to the destination QEMU: in particular, "cont" would fail if issued before connection, and "undo" the effect of the -S command-line option if issued after. Starting from this version, the effect of "stop" and "cont" will always take place at the end of migration (overriding the presence or absence of the -S option) and "cont" will never fail. This change should be transparent, since the old behavior was usually subject to a race condition.
    The monitor now remains responsive during incoming migration. The new NBD server is also available during incoming migration.

Spice
    QEMU will only send changed screen content to the Spice client when running in legacy VGA mode.
    Seamless migration support.
    Composite QXL commands (for linux guests).
    Multiple monitors on a single pci device.
    Arbitrary resolution support.
    Device based monitor configuration notification (for future drivers).
    various bug fixes and assertion removals in favor of a guest_bug mode.
    require spice-server >= 0.12.0

KVM
    QEMU now supports "old-style" PCI device assignment, which was the last missing feature from the qemu-kvm fork. Despite some remaining minor differences between qemu-kvm and QEMU, it is possible to switch from qemu-kvm to QEMU as soon as your guests can be rebooted. Live migration from qemu-kvm 1.2 to QEMU 1.3 is not supported, but can be enabled easily by downstream distributions who want to switch their packages from qemu-kvm to QEMU.

Xen
    QEMU can now be used to live-migrate Xen domains.

SLIRP
    SLIRP's TFTP server has improved performance, can transmit files bigger than 32 MB, and supports the block size option.

Guest agent
    The guest agent will now store the state file in /var/run by default.

Host support
    SPARCv7 and v8 support was removed.

Build dependencies
    QEMU can now be built with Clang.
    QEMU now uses pixman. QEMU configure will detect and use a system pixman if the development headers are ailable (they should be available for most recent Linux distros). As a fallback, we provide an internal copy of the pixman sources which will be used if there is no set of system pixman libraries. Compiling these will require autoconf.
    Compiling QEMU ver 0.12 or better.

(ryoon)

pullups 4032, 4035, 4037, 4038 and 4039

(spz)

Pullup ticket #4039 - requested by tron
mk/checksum/checksum.mk: build fix for MacOS

Revisions pulled up:
- mk/checksum/checksum.mk                                      1.17

-------------------------------------------------------------------
  Module Name: pkgsrc
  Committed By: tron
  Date: Thu Jan 24 11:20:56 UTC 2013

  Modified Files:
  pkgsrc/mk/checksum: checksum.mk

  Log Message:
  Force using the C locale while checking or generating patch file checksums.
  Mac OS X Mountain Lion's "sed" will otherwise reject some patch files
  (e.g. "pkgsrc/devel/libcfg+/patches/patch-ab") because of broken
  UTF-8 encoding.

  It would probably be better not to use the bundled "sed" under
  Mac OS X Mountain Lion at all. But it seems that this is not
  supported by "pkgsrc" at the moment.

  To generate a diff of this commit:
  cvs rdiff -u -r1.16 -r1.17 pkgsrc/mk/checksum/checksum.mk

(spz)

Pullup ticket #4038 - requested by obache
emulators/suse121_qt4: security update

Revisions pulled up:
- emulators/suse121_qt4/Makefile                                1.2
- emulators/suse121_qt4/distinfo                                1.2

-------------------------------------------------------------------
  Module Name: pkgsrc
  Committed By: obache
  Date: Thu Jan 24 10:28:53 UTC 2013

  Modified Files:
  pkgsrc/emulators/suse121_qt4: Makefile distinfo

  Log Message:
  Update libqt4 RPMs to 4.7.4-19.13.1 for CVE-2012-4929 and CVE-2012-5624.

  Bump PKGREVISION.

  To generate a diff of this commit:
  cvs rdiff -u -r1.1.1.1 -r1.2 pkgsrc/emulators/suse121_qt4/Makefile \
        pkgsrc/emulators/suse121_qt4/distinfo

(spz)

patches/patch-aa was forgotten from cvs rm. Now doing, thanks wiz@

(mef)

Pullup ticket #4037 - requested by obache
emulators/suse121_freetype2: security update

Revisions pulled up:
- emulators/suse121_freetype2/Makefile                          1.3
- emulators/suse121_freetype2/distinfo                          1.3

-------------------------------------------------------------------
  Module Name: pkgsrc
  Committed By: obache
  Date: Thu Jan 24 10:21:59 UTC 2013

  Modified Files:
  pkgsrc/emulators/suse121_freetype2: Makefile distinfo

  Log Message:
  Update libfreetype6 rpm to 2.4.7-9.1 for CVE-2012-5668 and CVE-2012-5669.

  Bump PKGREVISION.

  To generate a diff of this commit:
  cvs rdiff -u -r1.2 -r1.3 pkgsrc/emulators/suse121_freetype2/Makefile \
        pkgsrc/emulators/suse121_freetype2/distinfo

(spz)

Updated net/py-zmq to 2.2.0.1

(obache)

Update py-zmq to 2.2.0.1.

================
Changes in PyZMQ
================

2.2.0.1
=======

This is a tech-preview release, to try out some new features.
It is expected to be short-lived, as there are likely to be issues to iron out,
particularly with the new pip-install support.

Experimental New Stuff
----------------------

These features are marked 'experimental', which means that their APIs are not set in stone,
and may be removed or changed in incompatible ways in later releases.

Threadsafe ZMQStream
********************

With the IOLoop inherited from tornado, there is exactly one method that is threadsafe:
:meth:`.IOLoop.add_callback`.  With this release, we are trying an experimental option
to pass all IOLoop calls via this method, so that ZMQStreams can be used from one thread
while the IOLoop runs in another.  To try out a threadsafe stream:

.. sourcecode:: python

    stream = ZMQStream(socket, threadsafe=True)

pip install pyzmq
*****************

PyZMQ should now be pip installable, even on systems without libzmq.
In these cases, when pyzmq fails to find an appropriate libzmq to link against,
it will try to build libzmq as a Python extension.
This work is derived from `pyzmq_static <https://github.com/brandon-rhodes/pyzmq-static>`_.

To this end, PyZMQ source distributions include the sources for libzmq (2.2.0) and libuuid (2.21),
both used under the LGPL.

zmq.green
*********

The excellent `gevent_zeromq <https://github.com/traviscline/gevent_zeromq>`_ socket
subclass which provides `gevent <http://www.gevent.org/>`_ compatibility has been merged as
:mod:`zmq.green`.

.. seealso::

    :ref:`zmq_green`

Bugs fixed
----------

* TIMEO sockopts are properly included for libzmq-2.2.0
* avoid garbage collection of sockets after fork (would cause ``assert (mailbox.cpp:79)``).

2.2.0
=====

Some effort has gone into refining the pyzmq API in this release to make it a model for
other language bindings.  This is principally made in a few renames of objects and methods,
all of which leave the old name for backwards compatibility.

.. note::

    As of this release, all code outside ``zmq.core`` is BSD licensed (where
    possible), to allow more permissive use of less-critical code and utilities.

Name Changes
------------

* The :class:`~.Message` class has been renamed to :class:`~.Frame`, to better match other
  zmq bindings. The old Message name remains for backwards-compatibility.  Wherever pyzmq
  docs say "Message", they should refer to a complete zmq atom of communication (one or
  more Frames, connected by ZMQ_SNDMORE). Please report any remaining instances of
  Message==MessagePart with an Issue (or better yet a Pull Request).

* All ``foo_unicode`` methods are now called ``foo_string`` (``_unicode`` remains for
  backwards compatibility).  This is not only for cross-language consistency, but it makes
  more sense in Python 3, where native strings are unicode, and the ``_unicode`` suffix
  was wedded too much to Python 2.

Other Changes and Removals
--------------------------

* ``prefix`` removed as an unused keyword argument from :meth:`~.Socket.send_multipart`.

* ZMQStream :meth:`~.ZMQStream.send` default has been changed to `copy=True`, so it matches
  Socket :meth:`~.Socket.send`.

* ZMQStream :meth:`~.ZMQStream.on_err` is deprecated, because it never did anything.

* Python 2.5 compatibility has been dropped, and some code has been cleaned up to reflect
  no-longer-needed hacks.

* Some Cython files in :mod:`zmq.core` have been split, to reduce the amount of
  Cython-compiled code.  Much of the body of these files were pure Python, and thus did
  not benefit from the increased compile time.  This change also aims to ease maintaining
  feature parity in other projects, such as
  `pyzmq-ctypes <https://github.com/svpcom/pyzmq-ctypes>`_.

New Stuff
---------

* :class:`~.Context` objects can now set default options when they create a socket. These
  are set and accessed as attributes to the context.  Socket options that do not apply to a
  socket (e.g. SUBSCRIBE on non-SUB sockets) will simply be ignored.

* :meth:`~.ZMQStream.on_recv_stream` has been added, which adds the stream itself as a
  second argument to the callback, making it easier to use a single callback on multiple
  streams.

* A :attr:`~Frame.more` boolean attribute has been added to the :class:`~.Frame` (n辿e
  Message) class, so that frames can be identified as terminal without extra queires of
  :attr:`~.Socket.rcvmore`.

Experimental New Stuff
----------------------

These features are marked 'experimental', which means that their APIs are not
set in stone, and may be removed or changed in incompatible ways in later releases.

* :mod:`zmq.web` added for load-balancing requests in a tornado webapp with zeromq.

(obache)

swi-prolog lzw reading fix.

(is)

Fix gif (lzw) decoding vulnerability (CVS-2011-2896). Patches from upstream;
passes upstream's test now.

(is)

Updated net/zeromq to 2.2.0

(obache)

Update zeromq to 2.2.0.

0MQ version 2.2.0 (Stable), released on 2012/04/04
==================================================

Changes
-------

* Fixed issue 349, add send/recv timeout socket options.

Bug fixes
---------

* Fixed issue 301, fix builds on HP-UX 11iv3 when using either gcc or aCC.

* Fixed issue 305, memory leakage when using dynamic subscriptions.

* Fixed issue 332, libzmq doesn't compile on Android NDK.

* Fixed issue 293, libzmq doesn't follow ZMTP/1.0 spec.

* Fixed issue 342, cannot build against zmq.hpp under C++11.

(obache)

Force using the C locale while checking or generating patch file checksums.
Mac OS X Mountain Lion's "sed" will otherwise reject some patch files
(e.g. "pkgsrc/devel/libcfg+/patches/patch-ab") because of broken
UTF-8 encoding.

It would probably be better not to use the bundled "sed" under
Mac OS X Mountain Lion at all. But it seems that this is not
supported by "pkgsrc" at the moment.

(tron)

use http as MASTER_SITES.

(obache)

Pullup ticket #4035 - requested by tron
mk/bsd.prefs.mk: build fix for MacOS

Revisions pulled up:
- mk/bsd.prefs.mk                                              1.330

-------------------------------------------------------------------
  Module Name: pkgsrc
  Committed By: tron
  Date: Wed Jan 23 17:02:24 UTC 2013

  Modified Files:
  pkgsrc/mk: bsd.prefs.mk

  Log Message:
  X11 (from the Xquartz distribution) gets installed under "/opt/X11" under
  Mac OS X Mountain Lion. "/usr/X11" is only a symbolic link. Use the correct
  path because buidlink3 will otherwise filter out "-I/opt/X11/include" which
  causes build failures of e.g. the "cairo" package.

  To generate a diff of this commit:
  cvs rdiff -u -r1.329 -r1.330 pkgsrc/mk/bsd.prefs.mk

(spz)

+ calibre-0.9.15.

(wiz)

Updated math/ruby-spreadsheet to 0.7.7

(obache)

Update ruby-spreadsheet to 0.7.7.

=== 0.7.7 / 22.01.2013

Author: DeTeam <timur.deteam@gmail.com>
Date:  Tue Jan 22 19:11:52 2013 +0400

* Make tests pass
* Readme updated
* RuntimeError when file is empty
* Hoe in dev deps
* Finish with bundler
* Add a Gemfile

also see: https://github.com/zdavatz/spreadsheet/pull/24

(obache)

Pullup ticket #4032 - requested by tron
pkgtools/x11-links: avoid spurious warnings for MacOS

Revisions pulled up:
- pkgtools/x11-links/xorg-version.mk                            1.3

-------------------------------------------------------------------
  Module Name: pkgsrc
  Committed By: tron
  Date: Wed Jan 23 15:25:05 UTC 2013

  Modified Files:
  pkgsrc/pkgtools/x11-links: xorg-version.mk

  Log Message:
  Remove code which tries to use "Xquartz" to find out the X.org version
  (presumably only under Mac OS X Mountain Lion). "Xquarty" simply doesn't
  print out anything if you run it with "-version".

  This avoids a lot of warning messages from "bmake" while building packages
  that use X11.

  To generate a diff of this commit:
  cvs rdiff -u -r1.2 -r1.3 pkgsrc/pkgtools/x11-links/xorg-version.mk

(spz)

Updated emulators/suse121_qt4 to 12.1nb1

(obache)

Update libqt4 RPMs to 4.7.4-19.13.1 for CVE-2012-4929 and CVE-2012-5624.

Bump PKGREVISION.

(obache)

Updated emulators/suse121_freetype2 to 12.1nb2

(obache)

Add patch taken from "homebrew" project to fix the build with new version
of Xcode under Mac OS X.

(tron)

Update libfreetype6 rpm to 2.4.7-9.1 for CVE-2012-5668 and CVE-2012-5669.

Bump PKGREVISION.

(obache)

Updated graphics/png to 1.5.14

(wiz)

Update to 1.5.14:

Changes since the last public release (1.5.13):
  Added -DZ_SOLO to contrib/pngminim/*/makefile to work with zlib-1.2.7
  Warn about the incorrect runtime library setting for VS2010 debug DLL builds.
  Fixed build when using #define PNG_NO_READ_GAMMA in png_do_compose() in
    pngrtran.c (Domani Hannes).
  Check for png_ptr==NULL earlier in png_zalloc().
  Ignore, with a warning, out-of-range value of num_trans in png_set_tRNS().
  Rearranged building of ARM NEON optimizations. The ARM specific code is
    split out entirely to the arm subdirectory and changes to configure.acand
    Makefile.am to add new stuff are reduced.  Now material code changes,
    although for build test purposes, --enable-arm-neon now builds on non-ARM
    systems.
  Rebuilt Makefile.in, configure, etc., with autoconf-2.69 and automake-1.12.5.
  Fixed cases of unquoted DESTDIR in Makefile.am
  Fixed a minor bug in types to malloc and major bug in handling compressed
    iTXt. Compressed iTXt could not be handled.
  Cleaned up whitespace in the synopsis portion of the manpage "libpng.3"
  Disassembled the version number in scripts/options.awk (necessary for
    building on SunOs).
  Fixed Windows build issues, enabled ARM compilation. Various warnings issued
    by earlier versions of GCC fixed for Cygwin and Min/GW (which both use old
    GCCs.) ARM support is enabled by default in zlib.props (unsupported by
    Microsoft) and ARM compilation is made possible by deleting the check for
    x86. The test programs cannot be run because they are not signed.
  Fixed 'make distcheck' on SUN OS - libpng.so was not being removed
  Replaced AM_CONFIG_HEADER(config.h) with AC_CONFIG_HEADERS([config.h])
    in configure.ac
  De-configured build fixes to make a range of deconfiguration options (such
    as switching off read or write support) work in more cases.  Also upgraded
    pngtest and pngvalid to the libpng 1.6 versions (with some modifications)
    which provide more extensive testing.  Replaced pngtest.png because pngtest
    writes the ancillary chunks in a different order.
  Check validity of "num_unknowns" parameter of png_set_unknown_chunks()
    (Bug report from yuris).
  Check the validity of the "nentries" parameter of png_set_sPLT() and the
  "num_text" parameter of png_set_text_2().

(wiz)

sort

(jnemeth)

Updated math/R-genetics to 1.3.8

(wen)

Update to 1.3.8
Update LICENSE

Upstream changes:
genetics 1.3.8 - 2012-12-14
---------------------------

Bug fixes:

- Regenerate broken PDF files in inst/doc.

genetics 1.3.7 - 2012-09-14
---------------------------

Enhancements:

- Improve descripiton of last examples in manual page for HWE.test().

Other Changes:

- Correct warnings issued by recent versions of R CMD CHECK.

(wen)

Updated math/R-xts to 0.9.3

(wen)

Update to 0.9.3

No upstream changelog.

(wen)

Updated math/R-gstat to 1.0.15

(wen)

Update to 1.0.15

Upstream changes:
2012-12-14 10:03  BenediktGraeler

* pkg/demo/stkrige.R: - updated demo stkrige.R

2012-12-10 17:36  EdzerPebesma

* pkg/tests/Examples/gstat-Ex.Rout.save: examples check

2012-12-10 17:30  EdzerPebesma

* pkg/R/gstat.formula.R, pkg/R/gstat.formula.predict.R,
  pkg/R/predict.gstat.R: added checking of factor levels, as lm()
  does it.

2012-12-03 14:11  EdzerPebesma

* pkg/DESCRIPTION: date

2012-11-28 20:04  BenediktGraeler

* gstat_1.0-15.zip, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R,
  pkg/inst/doc/st.Rnw, pkg/man/fit.StVariogram.Rd,
  pkg/man/variogramSurface.Rd: - updated the vignette "st" to meet
  the new implementations

2012-11-22 14:41  BenediktGraeler

* gstat_1.0-15.zip, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R,
  pkg/man/fit.StVariogram.Rd, pkg/man/variogramSurface.Rd: - added
  a simplified sumMetric model having only a joint nugget
  - added the metric model including a spatio-temporal anisotropy

2012-11-21 17:01  BenediktGraeler

* ., gstat_1.0-15.zip, pkg/man/variogramSurface.Rd: - added
  compiled windows version gstat_1.0-15.zip
  - fixed example in variogramSurface.Rd

2012-11-21 16:14  BenediktGraeler

* pkg/R/krige0.R, pkg/R/stVariogramModels.R, pkg/demo/stkrige.R,
  pkg/man/variogramSurface.Rd: - added man/variogramSurface.Rd
  - fixed prodSum model in R/krige0.R and R/stVariogramModels.R
  - updated demo/stkrige.R

2012-11-20 20:02  EdzerPebesma

* pkg/NAMESPACE, pkg/R/krige.R, pkg/R/krige0.R, pkg/demo/00Index,
  pkg/demo/stkrige.R, pkg/tests/Examples/gstat-Ex.Rout.save: added
  stkrige demo; polished krige for ST method.

2012-11-20 17:53  EdzerPebesma

* pkg/DESCRIPTION: update

2012-11-20 14:27  BenediktGraeler

* pkg/man/fit.StVariogram.Rd: - fixed versioning issues

2012-11-20 14:26  BenediktGraeler

* pkg/man/krige.Rd:

2012-11-20 11:07  BenediktGraeler

* pkg/NAMESPACE, pkg/R/krige0.R, pkg/R/stVariogramModels.R,
  pkg/man/fit.StVariogram.Rd, pkg/man/krige.Rd: - added functio
  fit.StVariogram
  - added sumMetric covariance model handling as well STSDF

2012-11-19 10:22  EdzerPebesma

* pkg/NAMESPACE, pkg/R/krige0.R, pkg/R/variogramST.R,
  pkg/man/krige.Rd: added krige method;
  cleaned up NAMESPACE, changed call to zoo into as.zoo

2012-11-16 14:11  BenediktGraeler

* pkg/R/krige0.R, pkg/R/stVariogramModels.R: - added automated
  fitting of some StVariograms (separable, productSum, sumMetric)

2012-11-13 15:40  BenediktGraeler

* pkg/R/krige0.R: added support for the product-sum model in
  spatio-temporal kriging

2012-11-12 18:20  EdzerPebesma

* pkg/DESCRIPTION, pkg/NAMESPACE, pkg/tests/Examples,
  pkg/tests/Examples/gstat-Ex.Rout.save, pkg/tests/windst.R,
  pkg/tests/windst.Rout.save: updated imports; Imports spacetime
  (>=1.0-0); added examples check.

2012-11-11 15:04  EdzerPebesma

* pkg/DESCRIPTION, pkg/NAMESPACE, pkg/R/fit.variogram.R,
  pkg/R/fit.variogram.reml.R, pkg/R/gstat.debug.R,
  pkg/R/load.variogram.model.R, pkg/R/predict.gstat.R, pkg/R/set.R,
  pkg/R/variogram.default.R, pkg/R/variogramLine.R, pkg/R/vgm.R,
  pkg/R/zzz.R, pkg/tests/blockkr.Rout.save,
  pkg/tests/covtable.Rout.save, pkg/tests/cv.Rout.save,
  pkg/tests/cv3d.Rout.save, pkg/tests/fit.Rout.save,
  pkg/tests/krige0.Rout.save, pkg/tests/line.Rout.save,
  pkg/tests/merge.Rout.save, pkg/tests/na.action.Rout.save,
  pkg/tests/rings.Rout.save, pkg/tests/sim.Rout.save,
  pkg/tests/unproj.Rout.save, pkg/tests/variogram.Rout.save,
  pkg/tests/vdist.Rout.save, pkg/tests/windst.R,
  pkg/tests/windst.Rout.save: moved zoo, xts and spacetime from
  Depends: into Imports:
  changed all .Call() calls to follow the new format without
  quotes.

2012-11-10 22:56  EdzerPebesma

* pkg/tests/unproj.Rout.save, pkg/tests/windst.Rout.save: updated
  test outputs

2012-11-10 21:06  EdzerPebesma

* pkg/DESCRIPTION: added rgeos in Suggests:

2012-11-10 16:13  EdzerPebesma

* pkg/R/krige.R, pkg/man/fulmar.Rd, pkg/man/vv.Rd,
  pkg/tests/krige0.Rout.save, pkg/tests/windst.Rout.save: updated
  manual pages;
  first attempts for S/T idw in krige.R (untested!)
  updated test outputs

2012-11-08 20:42  EdzerPebesma

* pkg/demo/fulmar.R, pkg/demo/gstat3D.R, pkg/demo/wind.R: updated /
  corrected demos

2012-10-28 19:01  EdzerPebesma

* pkg/src/s.c, pkg/tests/krige0.Rout.save,
  pkg/tests/windst.Rout.save: s.c: removed #ifdef WIN32; tests:
  update to 2.15.2

2012-10-28 18:41  EdzerPebesma

* pkg/man/krige.Rd: added idw(formula, ST) method alias

2012-10-15 20:34  EdzerPebesma

* pkg/data/vv.rda: new st variogram, with zero spatial lags

2012-10-15 20:01  EdzerPebesma

* pkg/R/variogramST.R: computes pure time variogram, for zero space
  lag.

2012-10-14 21:26  EdzerPebesma

* pkg/R/krige.R, pkg/R/variogram.ST.R, pkg/R/variogramST.R,
  pkg/man/variogram.Rd, pkg/src/s.c, pkg/src/sem.c: some work on
  zero distance semivariances, variogramST still needs more work.

2012-10-06 16:09  EdzerPebesma

* pkg/DESCRIPTION, pkg/R/fit.variogram.R, pkg/inst/ChangeLog,
  pkg/tests/unproj.Rout.save, pkg/tests/windst.Rout.save: version
  change; fit.variogram now fits Err models, too.

2012-09-12 14:21  EdzerPebesma

* pkg/R/fit.variogram.R: for variogramCloud fitting, np shoud be 1

2012-09-12 14:20  EdzerPebesma

* pkg/R/fit.variogram.R, pkg/R/fit.variogram.reml.R,
  pkg/R/gstat.debug.R, pkg/R/krige0.R,
  pkg/R/load.variogram.model.R, pkg/R/predict.gstat.R, pkg/R/set.R,
  pkg/R/variogram.default.R, pkg/R/variogramLine.R, pkg/R/vgm.R,
  pkg/R/zzz.R: added PACKAGE="gstat" argument to all .Call or .C
  calls;
  allow fit.variogram to fit to variogramCloud objects

2012-07-24 17:40  EdzerPebesma

* pkg/tests/unproj.Rout.save: version update

2012-07-23 13:59  EdzerPebesma

* pkg/demo/lhs.R: replaced non-ASCII character

2012-07-01 22:36  EdzerPebesma

* makefile, pkg/DESCRIPTION, pkg/src/s.c: version update; #include
  <S.h>; added -Wall to checking

2012-06-18 14:06  EdzerPebesma

* pkg/R/show.vgms.R, pkg/src/chfactor.c, pkg/src/copy.c,
  pkg/src/data.c, pkg/src/err.c, pkg/src/fit.c, pkg/src/getest.c,
  pkg/src/hsehldr.c, pkg/src/init.c, pkg/src/ivecop.c,
  pkg/src/lex.c, pkg/src/lufactor.c, pkg/src/machine.c,
  pkg/src/mapio.c, pkg/src/matop.c, pkg/src/meminfo.c,
  pkg/src/memory.c, pkg/src/msim.c, pkg/src/norm.c,
  pkg/src/parse.c, pkg/src/polygon.c, pkg/src/predict.c,
  pkg/src/pxop.c, pkg/src/qrfactor.c, pkg/src/sem.c,
  pkg/src/solve.c, pkg/src/sparse.c, pkg/src/sprow.c,
  pkg/src/submat.c, pkg/src/utils.c, pkg/src/vecop.c,
  pkg/src/version.c, pkg/tests/unproj.Rout.save,
  pkg/tests/windst.Rout.save: removed all warnings that would
  result from using -Wall; updated two test outputs.

2012-06-16 20:52  EdzerPebesma

* pkg/R/show.vgms.R, pkg/R/vgm.R: as.groups in show.vgms() now
  works, too.

2012-06-16 16:38  EdzerPebesma

* pkg/R/show.vgms.R, pkg/man/show.vgms.Rd: added as.groups
  argument; typo

2012-06-16 15:37  EdzerPebesma

* pkg/R/show.vgms.R, pkg/R/vgm.R, pkg/man/show.vgms.Rd: show.vgms
  now accepts sill, range and nugget to be vectors of length > 1

2012-05-31 19:06  EdzerPebesma

* makefile, pkg/DESCRIPTION, pkg/tests/unproj.R: version; took out
  gstat.org

2012-05-01 17:32  EdzerPebesma

* pkg/man/jura.Rd: url; more comments

2012-05-01 17:28  EdzerPebesma

* pkg/man/jura.Rd: comments from David Rossiter

2012-04-30 20:33  EdzerPebesma

* standalone/makefile, standalone/makefile.in,
  standalone/src/version.h: removed configure target

2012-04-30 19:42  EdzerPebesma

* pkg/man/oxford.Rd: reference to jpg corrected, noted by David
  Rossiter

2012-04-30 12:54  EdzerPebesma

* attic/S/makefile, makefile, pkg/DESCRIPTION, pkg/inst/ChangeLog,
  pkg/src/block.c, pkg/src/block.h, pkg/src/chfactor.c,
  pkg/src/config.hin, pkg/src/copy.c, pkg/src/debug.h,
  pkg/src/defs.h, pkg/src/direct.c, pkg/src/err.c, pkg/src/fit.h,
  pkg/src/gcdist.c, pkg/src/gcdist.h, pkg/src/getest.h,
  pkg/src/gls.h, pkg/src/glvars.c, pkg/src/glvars.h,
  pkg/src/hsehldr.c, pkg/src/lm.c, pkg/src/lufactor.c,
  pkg/src/machine.c, pkg/src/machine.hin, pkg/src/mapio.c,
  pkg/src/mapio.h, pkg/src/matop.c, pkg/src/matrix.h,
  pkg/src/matrix2.h, pkg/src/meminfo.c, pkg/src/meminfo.h,
  pkg/src/msim.c, pkg/src/msim.h, pkg/src/nsearch.c,
  pkg/src/nsearch.h, pkg/src/parse.c, pkg/src/parse.h,
  pkg/src/plot.h, pkg/src/polygon.c, pkg/src/polygon.h,
  pkg/src/pqueue.c, pkg/src/pqueue.h, pkg/src/predict.h,
  pkg/src/random.h, pkg/src/read.h, pkg/src/reml.c, pkg/src/reml.h,
  pkg/src/report.h, pkg/src/sem.c, pkg/src/sim.h, pkg/src/solve.c,
  pkg/src/sparse.h, pkg/src/stat.c, pkg/src/stat.h,
  pkg/src/userio.c, pkg/src/userio.h, pkg/src/utils.c,
  pkg/src/utils.h, pkg/src/vario.h, pkg/src/vario_fn.c,
  pkg/src/vario_fn.h, pkg/src/vario_io.c, pkg/src/vario_io.h,
  pkg/src/version.h, pkg/tests/cv.Rout.save,
  pkg/tests/cv3d.Rout.save, standalone/meschach/machine.h,
  standalone/src/s.h, standalone/src/version.h: added missing src
  files; increased version number.

2012-04-30 11:46  EdzerPebesma

* COPYING, ChangeLog, ChangeLog.cvs, README, S, TODO, aclocal.m4,
  attic/S, attic/S/R/gstat/src/config.w32,
  attic/S/R/gstat/src/machine.w32, attic/S/TODO, configure,
  configure.in, install-sh, makefile, makefile.in,
  pkg/src/config.w32, pkg/src/machine.w32, standalone/COPYING,
  standalone/ChangeLog, standalone/ChangeLog.cvs,
  standalone/README, standalone/aclocal.m4, standalone/configure,
  standalone/configure.in, standalone/install-sh,
  standalone/makefile, standalone/makefile.in: further cleanup and
  code move

2012-04-30 11:31  EdzerPebesma

* S/R/gstat/CHANGES, S/R/gstat/DESCRIPTION, S/R/gstat/INDEX,
  S/R/gstat/LICENCE, S/R/gstat/NAMESPACE, S/R/gstat/aclocal.m4,
  S/R/gstat/cleanup, S/R/gstat/configure, S/R/gstat/configure.in,
  S/R/gstat/configure.win, S/R/gstat/inst, S/R/gstat/makefile.in,
  S/data, S/demo, S/man, S/src, S/tests, cmd, include, lib,
  meschach, pkg, pkg/CHANGES, pkg/DESCRIPTION, pkg/INDEX,
  pkg/LICENCE, pkg/NAMESPACE, pkg/R, pkg/R/fit.lmc.R,
  pkg/R/fit.lmc.q, pkg/R/fit.variogram.R,
  pkg/R/fit.variogram.gls.R, pkg/R/fit.variogram.gls.q,
  pkg/R/fit.variogram.q, pkg/R/fit.variogram.reml.R,
  pkg/R/fit.variogram.reml.q, pkg/R/get.contr.R, pkg/R/get.contr.q,
  pkg/R/gstat.R, pkg/R/gstat.cv.R, pkg/R/gstat.cv.q,
  pkg/R/gstat.debug.R, pkg/R/gstat.debug.q, pkg/R/gstat.formula.R,
  pkg/R/gstat.formula.predict.R, pkg/R/gstat.formula.predict.q,
  pkg/R/gstat.formula.q, pkg/R/gstat.q, pkg/R/hscat.R,
  pkg/R/hscat.q, pkg/R/image.data.frame.R,
  pkg/R/image.data.frame.q, pkg/R/krige.R, pkg/R/krige.cv.R,
  pkg/R/krige.cv.q, pkg/R/krige.q, pkg/R/krige0.R, pkg/R/krige0.q,
  pkg/R/krigeTg.R, pkg/R/krigeTg.q, pkg/R/load.variogram.model.R,
  pkg/R/load.variogram.model.q, pkg/R/map.to.lev.R,
  pkg/R/map.to.lev.q, pkg/R/ossfim.R, pkg/R/ossfim.q,
  pkg/R/panel.pointPairs.R, pkg/R/panel.pointPairs.q,
  pkg/R/plot.gstatVariogram.R, pkg/R/plot.gstatVariogram.q,
  pkg/R/plot.pointPairs.R, pkg/R/plot.pointPairs.q,
  pkg/R/plot.variogramCloud.R, pkg/R/plot.variogramCloud.q,
  pkg/R/predict.gstat.R, pkg/R/predict.gstat.q,
  pkg/R/print.gstat.R, pkg/R/print.gstat.q,
  pkg/R/print.variogram.R, pkg/R/print.variogram.q,
  pkg/R/print.variogramCloud.R, pkg/R/print.variogramCloud.q,
  pkg/R/print.variogramModel.R, pkg/R/print.variogramModel.q,
  pkg/R/set.R, pkg/R/set.q, pkg/R/show.vgms.R, pkg/R/show.vgms.q,
  pkg/R/smenu.R, pkg/R/spplot.R, pkg/R/spplot.q,
  pkg/R/variogram.ST.R, pkg/R/variogram.default.R,
  pkg/R/variogram.default.q, pkg/R/variogram.formula.R,
  pkg/R/variogram.formula.q, pkg/R/variogram.gstat.R,
  pkg/R/variogram.gstat.q, pkg/R/variogramLine.R,
  pkg/R/variogramLine.q, pkg/R/variogramST.R, pkg/R/variogramST.q,
  pkg/R/vgm.R, pkg/R/vgm.panel.R, pkg/R/vgm.panel.q, pkg/R/vgm.q,
  pkg/R/xyz2img.R, pkg/R/xyz2img.q, pkg/R/zzz.R, pkg/R/zzz.q,
  pkg/aclocal.m4, pkg/cleanup, pkg/configure, pkg/configure.in,
  pkg/configure.win, pkg/data, pkg/demo, pkg/inst, pkg/makefile.in,
  pkg/man, pkg/src, pkg/src/data.c, pkg/src/data.h,
  pkg/src/defaults.h, pkg/src/direct.h, pkg/src/err.h,
  pkg/src/ext_dbase.h, pkg/src/fit.c, pkg/src/getest.c,
  pkg/src/gls.c, pkg/src/init.c, pkg/src/ivecop.c, pkg/src/lex.c,
  pkg/src/lex.h, pkg/src/lex.l, pkg/src/lm.h, pkg/src/memory.c,
  pkg/src/meschach, pkg/src/meschach/dmacheps.c,
  pkg/src/meschach/fmacheps.c, pkg/src/meschach/maxint.c,
  pkg/src/norm.c, pkg/src/predict.c, pkg/src/pxop.c,
  pkg/src/qrfactor.c, pkg/src/random.c, pkg/src/read.c,
  pkg/src/s.c, pkg/src/s.h, pkg/src/select.c, pkg/src/select.h,
  pkg/src/sem.h, pkg/src/sim.c, pkg/src/sparse.c,
  pkg/src/sparse2.h, pkg/src/sprow.c, pkg/src/submat.c,
  pkg/src/vario.c, pkg/src/vecop.c, pkg/src/version.c,
  pkg/src/zmatrix.h, pkg/src/zmatrix2.h, pkg/tests, src,
  standalone, standalone/cmd, standalone/include, standalone/lib,
  standalone/meschach, standalone/src, standalone/src/version.h:
  code reorganization; moving R package to pkg, standalone stuff to
  standalone

2012-04-09 17:22  EdzerPebesma

* S/R/gstat/inst/ChangeLog, S/makefile: update

2012-03-25 14:46  EdzerPebesma

* S/R/gstat/DESCRIPTION: added dependency to zoo and xts

2012-01-20 08:04  EdzerPebesma

* S/src/plot.variogramCloud.q: r-sig-geo question from Tom
  Gottfried, 11/03/2011

2012-01-19 21:12  EdzerPebesma

* S/R/gstat/inst/ChangeLog, S/src/plot.variogramCloud.q, src/s.c:
  minor memory leak fix.

2011-12-19 14:33  EdzerPebesma

* S/man/variogram.Rd: added note that variogram.default may not be
  a very good entry point
  (likely lacking critical documentation)

2011-12-12 17:06  EdzerPebesma

* S/src/krige0.q, S/tests/blockkr.Rout.save,
  S/tests/covtable.Rout.save, S/tests/cv.Rout.save,
  S/tests/cv3d.Rout.save, S/tests/fit.Rout.save,
  S/tests/krige0.Rout.save, S/tests/line.Rout.save,
  S/tests/merge.Rout.save, S/tests/na.action.Rout.save,
  S/tests/rings.Rout.save, S/tests/sim.Rout.save,
  S/tests/unproj.Rout.save, S/tests/variogram.Rout.save,
  S/tests/vdist.Rout.save, S/tests/windst.R,
  S/tests/windst.Rout.save: updated tests output (novel zoo
  warning)

(wen)

Updated math/R-spacetime to 1.0.3

(wen)

Update to 1.0.3

Upstream changes:
2012-12-14 13:39  EdzerPebesma

        * inst/doc/jss816.Rnw, inst/doc/sto.Rnw, inst/doc/stpg.Rnw: updates

2012-11-27 16:57  EdzerPebesma

        * inst/doc/52n_logocl.pdf, inst/doc/jss816.Rnw,
          inst/doc/logo52n.pdf: logo name change

2012-11-27 16:33  EdzerPebesma

        * R/STFDF-methods.R, R/coerce.R, inst/doc/52n_logocl.pdf,
          inst/doc/jss816.Rnw, man/STFDF-class.Rd, man/na.Rd,
          tests/Examples/spacetime-Ex.Rout.save, tests/basic.R,
          tests/basic.Rout.save: as(stfdf, "xts") now exports more than one
          variable;
          added na.* docs
          added 52N logo to vignette

2012-11-24 19:03  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-xts.R, R/aggregate.R, R/na.R,
          R/stplot.R, demo/gvis.R, inst/doc/sto.Rnw, man/stplot.Rd,
          man/timematch.Rd, tests/Examples/spacetime-Ex.Rout.save: added
          na.locf, na.approx and na.spline functions (na.R, na.Rd);
          added require(zoo) to aggregate method that needs aggregate.zoo,
          so that NAMESPACE is now clean; added zoo to Suggests:
          corrected key.space argument in stplot (mode = 'ts');

2012-11-17 15:54  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/ST-methods.R, R/aggregate.R,
          R/interval.R, R/over.R, R/stplot.R, R/timematch.R,
          inst/doc/sto.Rnw, man/timematch.Rd,
          tests/Examples/spacetime-Ex.Rout.save, tests/over.R,
          tests/over.Rout.save: timeMatch now is an S4 generic;
          NAMESPACE imports only what is needed, and some repairs for zoo;
          sto.Rnw restored;
          over now always uses interval:interval_overlaps for overlapping
          intervals;
          updated test outputs;
          DESCRIPTION now mentions package intervals

2012-11-13 11:20  EdzerPebesma

        * NAMESPACE: import MATCH.default, to accomodate zoo at CRAN

2012-11-12 18:34  EdzerPebesma

        * NAMESPACE, R/aggregate.R: updates;

2012-11-12 18:18  EdzerPebesma

        * NAMESPACE, R/aggregate.R, R/timematch.R, inst/doc/sto.Rnw,
          man/timematch.Rd, tests/Examples,
          tests/Examples/spacetime-Ex.Rout.save, tests/basic.Rout.save,
          tests/stconstruct.Rout.save: found the MATCH error: zoo needs to
          have S3method("MATCH", "default") in
          its NAMESPACE, along with MATCH import and export in spacetime
          NAMESPACE;
          else (e.g. with zoo 1.7-9 on CRAN) sto.Rnw (aggregate using
          aggregate.zoo)
          will not work without attaching zoo first; so, we now depend on
          zoo's
          development version...

2012-11-12 08:27  EdzerPebesma

        * NAMESPACE, R/ST-methods.R, R/aggregate.R, R/timematch.R,
          inst/doc/sto.Rnw, tests/basic.Rout.save, tests/over.R,
          tests/over.Rout.save, tests/stconstruct.Rout.save, tests/wind.R,
          tests/wind.Rout.save: further NAMESPACE import limitation;
          but aggregate still needs zoo to be attached.

2012-11-11 15:03  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/aggregate.R, data/air.rda,
          inst/doc/jss816.Rnw, inst/doc/sto.Rnw, man/STSDF-class.Rd,
          man/unstack.Rd, tests/basic.R, tests/basic.Rout.save,
          tests/over.R, tests/over.Rout.save, tests/raster.R,
          tests/raster.Rout.save, tests/stconstruct.R,
          tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R,
          tests/wind.Rout.save: reorganized zoo and xts to be in Imports:
          rather than Depends:
          (one issue still hangs with zoo needing to be attached before
          sto.Rnw
          can run aggregate.zoo)
          doc files: removed xts() calls when only time steps were passed.

2012-11-10 22:57  EdzerPebesma

        * DESCRIPTION, R/Class-ST.R, R/ST-methods.R, R/STFDF-methods.R,
          R/STIDF-methods.R, R/STSDF-methods.R, R/coerce.R,
          R/stconstruct.R, R/timematch.R: syncronized tzone of endTime with
          that of time; version bump.

2012-11-10 16:12  EdzerPebesma

        * DESCRIPTION, R/STFDF-methods.R, R/STIDF-methods.R,
          R/STSDF-methods.R, data/air.rda, inst/doc/jss816.Rnw,
          man/STLDF-class.Rd, tests/raster.Rout.save, tests/wind.Rout.save:
          added time zone to rural air data;
          time zones in various ST methods (as.xts, selection) got lost,
          now retained;
          updated tests outputs;
          version bump

2012-11-05 13:22  EdzerPebesma

        * man/eof.Rd: limited time steps for example, to reduce run time

2012-11-05 11:43  EdzerPebesma

        * DESCRIPTION, demo/00Index, demo/trip.R, inst/CITATION,
          inst/doc/jss816.Rnw, inst/doc/jss816.bib, man/ST-class.Rd,
          man/STFDF-class.Rd, man/STIDF-class.Rd, man/STLDF-class.Rd,
          man/STSDF-class.Rd, man/STTDF-class.Rd, man/delta.Rd,
          man/over.Rd, man/stconstruct.Rd, man/stplot.Rd, man/timematch.Rd,
          tests/traj.R, tests/traj.Rout.save: update references to JSS
          paper; its publication corresponds to releasing 1.0-0;
          removed trip from Suggests:.

2012-10-29 13:13  BenediktGraeler

        * DESCRIPTION:

2012-10-28 20:10  EdzerPebesma

        * inst/doc/sto.Rnw: updated information on endTime and intervals.

2012-10-28 18:42  EdzerPebesma

        * R/raster.R, R/timematch.R: reverted back setClass();
          alternative way to keep tzone in augment.with.one()

2012-10-27 20:22  EdzerPebesma

        * R/STFDF-methods.R, R/STSDF-methods.R, R/raster.R, R/timematch.R,
          tests/basic.Rout.save, tests/traj.Rout.save: raster: restore
          setClass for RasterStackBrick, if not loaded before;
          ST?DF-methods: missing , in as.data.frame method
          timematch.R: augment.with.one dropped tzone;
          tests: updated for tzone; coerce
          STFDF->STSDF->STIDF->STSDF->STFDF no longer
          identical, as endTime doesn't get set back (further check
          needed?)

2012-10-26 18:46  EdzerPebesma

        * R/STFDF-methods.R, R/STSDF-methods.R, R/timematch.R: two bugs
          caught by Ben Graeler; cosmetic changes to timematch.

2012-10-25 19:41  EdzerPebesma

        * demo/00Index: added gvis to index

2012-10-24 06:50  EdzerPebesma

        * demo/gvis.R: added googleVis demos

2012-10-23 05:59  EdzerPebesma

        * R/raster.R: removed setClass.

2012-10-21 20:33  EdzerPebesma

        * inst/doc/sto.Rnw: updated references

2012-10-21 09:24  EdzerPebesma

        * R/ST-methods.R, R/STIDF-methods.R, R/STSDF-methods.R,
          R/aggregate.R, R/eof.R, R/plot.R, R/stconstruct.R, R/stplot.R:
          EOF: use prcomp.formula so that na.action gets passed;
          default xts slot gets named index column;

2012-10-18 13:15  EdzerPebesma

        * R/stplot.R, man/stplot.Rd: argument mismatch (scales =
          list(draw=FALSE))

2012-10-14 10:53  EdzerPebesma

        * NAMESPACE, R/ST-methods.R, R/coerce.R: dim methods for STT, STx
          cercion.

2012-10-03 14:56  EdzerPebesma

        * R/endtime.R, R/stplot.R, inst/doc/jss816.Rnw: added endTime;
          update to vignette; scales handling in stplot.

2012-09-28 20:48  EdzerPebesma

        * DESCRIPTION, R/stplot.R, man/stplot.Rd: stplot: correct scales
          argument if unprojected;
          DESCRIPTION: dropped removed file.

2012-09-25 21:34  EdzerPebesma

        * DESCRIPTION, R/Class-STLDF.R, R/STLDF-methods.R,
          inst/doc/jss816.Rnw, tests/basic.R, tests/over.R,
          tests/over.Rout.save, tests/traj.R, tests/traj.Rout.save: removed
          STLDF sources; version bump; tried to make tests clean wrt TZ
          differences

2012-09-25 08:20  EdzerPebesma

        * R/STTDF-methods.R: needed for CRAN submission

2012-09-24 19:42  EdzerPebesma

        * R/tgrass.R: dealt with endTime in writing tgrass files

2012-09-23 18:48  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/Class-STLDF.R,
          R/ST-methods.R, R/STFDF-methods.R, R/STIDF-methods.R,
          R/STLDF-methods.R, R/STSDF-methods.R, R/STTDF-methods.R,
          R/coerce.R, R/eof.R, R/interval.R, R/over.R, R/plot.R,
          R/raster.R, R/stconstruct.R, R/timematch.R, data/air.rda,
          inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/jss816.Rnw,
          inst/doc/move.fig, inst/doc/move.pdf, man/ST-class.Rd,
          man/STFDF-class.Rd, man/STIDF-class.Rd, man/STLDF-class.Rd,
          man/STSDF-class.Rd, man/delta.Rd, man/interval.Rd,
          man/stconstruct.Rd, man/timematch.Rd, tests/basic.Rout.save,
          tests/over.R, tests/over.Rout.save, tests/raster.Rout.save,
          tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R,
          tests/wind.Rout.save: removed STL and STLDF class, added endTime
          as slot to ST, and
          tried to deal with all the consequences of having an endTime for
          each observation. Started integrating the more efficient
          intervals
          matching from package "intervals". Updated vignette and docs.

2012-09-12 18:23  EdzerPebesma

        * DESCRIPTION, R/raster.R, R/tgrass.R: moved tgrass stuff to new
          file

2012-09-12 15:25  EdzerPebesma

        * R/ST-methods.R, R/raster.R, man/tgrass.Rd: minor mods to pass
          check again.

2012-09-12 15:01  EdzerPebesma

        * man/tgrass.Rd: {read,write}.tgrass doc

2012-09-12 14:28  EdzerPebesma

        * R/raster.R: removed the "x" before .tif

2012-09-12 14:12  EdzerPebesma

        * NAMESPACE, R/raster.R: updated {read,write}.tgrass functions

2012-09-11 17:07  EdzerPebesma

        * R/raster.R: typo

2012-09-07 09:22  EdzerPebesma

        * DESCRIPTION, R/Class-ST.R, R/Class-STFDF.R, R/Class-STIDF.R,
          R/Class-STLDF.R, R/Class-STSDF.R, R/Class-STTDF.R,
          R/ST-methods.R, R/STLDF-methods.R, R/raster.R, tests/basic.R,
          tests/basic.Rout.save: class validity now checks that attribute
          names in attributes, space or time are not duplicated.

2012-08-29 06:26  EdzerPebesma

        * R/stconstruct.R: patch from Ben Graeler, dealing with univariate
          time-wide data

2012-08-27 07:10  EdzerPebesma

        * DESCRIPTION, R/aggregate.R, R/over.R, R/timematch.R,
          man/interval.Rd, man/over.Rd, man/timematch.Rd,
          tests/traj.Rout.save: split over.R; added links to manual pages;
          updated Suggests: packages.

2012-08-26 21:07  EdzerPebesma

        * R/over.R, man/interval.Rd, man/timematch.Rd, tests/over.R,
          tests/over.Rout.save: added timeMatch for STL objects - irregular
          time intervals

2012-08-13 15:53  EdzerPebesma

        * R/over.R: simplified (hopefully) the time over function

2012-08-10 11:41  EdzerPebesma

        * DESCRIPTION, R/raster.R, man/stplot.Rd, tests/raster.R,
          tests/raster.Rout.save, tests/traj.Rout.save: added raster
          conversion functions

2012-07-25 13:40  EdzerPebesma

        * inst/doc/jss816.Rnw, inst/doc/jss816.bib, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib: name change of vignette.

2012-07-04 16:37  EdzerPebesma

        * inst/doc/spacetime.Rnw, tests/traj.R, tests/traj.Rout.save,
          tests/wind.Rout.save: submission of 0.7-1 to CRAN

2012-07-02 07:58  EdzerPebesma

        * NAMESPACE, R/plot.R, R/stplot.R, inst/doc/move.fig,
          inst/doc/move.pdf, inst/doc/spacetime.Rnw: new submission to JSS

2012-07-01 22:40  EdzerPebesma

        * man/STLDF-class.Rd: man page for STLDF

2012-07-01 22:40  EdzerPebesma

        * inst/doc/move.fig, inst/doc/move.pdf, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib, man/STFDF-class.Rd, man/STIDF-class.Rd,
          man/STSDF-class.Rd, man/STTDF-class.Rd, man/stplot.Rd: class
          work; comments from second JSS review

2012-06-19 07:49  EdzerPebesma

        * R/Class-STLDF.R, R/STLDF-methods.R, R/plot.R, inst/doc/cls.fig,
          inst/doc/cls.pdf, inst/doc/spacetime.Rnw, man/STIDF-class.Rd:
          more edits to class diagram

2012-06-19 07:08  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-STLDF.R, R/ST-methods.R,
          R/STLDF-methods.R, R/STTDF-methods.R, R/plot.R, R/stplot.R,
          inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib, man/stplot.Rd, tests/traj.R: added
          STL/STLDF class, and methods; added plot methods

2012-05-31 13:33  EdzerPebesma

        * man/stplot.Rd, tests/traj.Rout.save: dependent package versions
          in test; do.repeat argument in docs

2012-05-31 12:56  EdzerPebesma

        * R/over.R, R/stplot.R: added do.repeat argument to stplot.R

2012-05-29 12:28  EdzerPebesma

        * DESCRIPTION: updated URL field

2012-05-29 10:27  EdzerPebesma

        * DESCRIPTION: version / date increase

2012-05-29 10:24  EdzerPebesma

        * R/stplot.R: cuts argument was not passed to spplot if animate > 0

2012-05-25 13:27  EdzerPebesma

        * inst/doc/spacetime.Rnw: two minor modifications in section 8.

2012-05-25 08:46  EdzerPebesma

        * inst/doc/produc.jpg, inst/doc/produc.png: size reduction of
          bitmap, needed by CRAN

2012-05-24 16:18  EdzerPebesma

        * R/over.R, inst/doc/sto.Rnw: simplifications to timeMatch; better
          explanation of interval-interval match in vignette

2012-05-24 07:17  EdzerPebesma

        * R/interval.R, R/over.R, inst/doc/move.fig, inst/doc/move.pdf,
          inst/doc/spacetime.Rnw, inst/doc/wind.pdf, inst/doc/windts.pdf,
          man/over.Rd, man/timematch.Rd, tests/over.R,
          tests/over.Rout.save: more work getting time intervals work
          properly, and document this.

2012-05-14 21:31  EdzerPebesma

        * NAMESPACE, R/Class-ST.R, R/Class-STTDF.R, R/ST-methods.R,
          R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R,
          R/interval.R, inst/doc/cls.fig, inst/doc/cls.pdf,
          inst/doc/spacetime.Rnw, man/ST-class.Rd, man/canmove.Rd,
          man/interval.Rd, tests/basic.Rout.save: got rid of canMove slot,
          and methods.

2012-05-14 19:31  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/STFDF-methods.R,
          R/STIDF-methods.R, R/STSDF-methods.R, R/interval.R, data/air.rda,
          inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/move.fig,
          inst/doc/move.pdf, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib, man/ST-class.Rd, man/canmove.Rd,
          man/stplot.Rd, tests/basic.Rout.save, tests/over.Rout.save,
          tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R,
          tests/wind.Rout.save: added canMove slot to ST; updated class
          figure;
          increased version; re-saved air data;
          added figure and timeIsInterval/canMove to vignette;

2012-05-13 20:49  EdzerPebesma

        * DESCRIPTION, R/Class-ST.R, R/ST-methods.R, R/STFDF-methods.R,
          R/STIDF-methods.R, R/STSDF-methods.R, R/STTDF-methods.R,
          R/coerce.R, R/stplot.R, inst/doc/spacetime.Rnw,
          inst/doc/spacetime.bib: further review from JSS; improved support
          for timeIsInterval.

2012-05-03 15:10  EdzerPebesma

        * DESCRIPTION: updated date
2012-04-23 13:44  EdzerPebesma

        * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/ST-methods.R,
          R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R,
          R/coerce.R, R/interval.R, R/stconstruct.R, man/ST-class.Rd,
          man/interval.Rd, man/stconstruct.Rd: added timeIsInterval()
          generic (retrieve, set), which indicates whether time is Interval
          (TRUE) or Instant (FALSE).

2012-04-21 20:47  EdzerPebesma

        * R/over.R: got rid of some double loops.

2012-04-09 17:22  EdzerPebesma

        * DESCRIPTION: version update

2012-04-03 15:53  EdzerPebesma

        * DESCRIPTION, R/STTDF-methods.R, R/coerce.R,
          inst/doc/spacetime.Rnw: moved some ST? coercion functions;
          updated version number; diveMove example change in vignette.

(wen)

Added math/R-intervals version 0.13.3

(wen)

Add R-intervals

(wen)

Import R-intervals version 0.13.3

Tools for working with and comparing sets of points and intervals.

(wen)

Implement some changes markd suggested.

(wiz)

Added editors/dhex version 0.68

(wiz)

+ dhex

(wiz)

Add missing patches.

(wiz)

Import dhex-0.68 as editors/dhex.
Packaged for wip by amoibos and myself.

Dhex is a ncurses-based hex-editor with a diff mode. It makes heavy
use of colors, but is also themeable to work on monochrome monitors.
It includes the good old Action Cartridge Search Algorithm to find
specific changes.

(wiz)

Added x11/tktable version 2.10nb1

(wiz)

+ tktable

(wiz)

Import tktable-2.10nb1 as x11/tktable.
Packaged for wip by othyro.

TkTable is a full-featured 2D table widget for Tk. It supports images, embedded
windows, varying colors and fonts, and more. Also here is Vu, a Tk widget
extension that includes a pie, dial, spinbox and more, and Tile, a themed widget
set for Tk.

(wiz)

Added x11/gxmessage version 2.20.0

(wiz)

+ gxmessage.

(wiz)

Import gxmessage-2.20.0 as x11/gxmessage.
Packaged for wip by jihbed and othyro.

A GTK2 based xmessage clone, gxmessage tries to be as compatible
as possible.  You might like it if you're running a mostly GTK
desktop.

(wiz)

Added graphics/qcomicbook version 0.9.0

(wiz)

+ qcomicbook

(wiz)

Import qcomicbook-0.9.0 as graphics/qcomicbook.
Packaged for wip by myself, netcap, and othyro.

QComicBook is a viewer for comic book archives containing
jpeg/png/xpm/gif images, which aims at convenience and simplicity.
Features include: automatic decompression, full-screen mode,
two-pages viewing, Japanese mode, thumbnails view, page scaling,
mouse or keyboard navigation etc.

(wiz)

Added graphics/gimp-high-pass-filter version 1.2

(wiz)

+ gimp-high-pass-filter

(wiz)

Import gimp-high-pass-filter-1.2 as graphics/gimp-high-pass-filter.
Packaged for wip by othyro.

A general purpose high-pass filter plugin. It shows up as
Filters->Generic->High Pass Filter. You can select a blur radius that sets the
size of detail to be passed by the filter, a contrast adjustment, as well as an
option to keep the source layer or replace it.

It actually implements 5 different high pass modes:

1. Colour - I think this is the same as photoshop's high pass filter effect.
2. Preserve DC - like colour, but adds the average image colour back in.
3. Greyscale - this desaturates the layer before high pass filtering.
4. Greyscale, Apply Chroma - as above, but blends it in with the source
layer colours
5. Redrobes - (named after the technique described by Redrobes)

(wiz)

Updated multimedia/kaffeine to 1.2.2

(wiz)

Update to 1.2.2, the KDE4 version.

Packaged for wip by othyro.

(wiz)

Updated Erlang packages to R15B03-1 (15.1.3.1 in pkgsrc).

(asau)

Updated devel/libctl to 3.2.1

(wiz)

Update to 3.2.1, provided by outpaddling and asau in wip.

libctl 3.2.1

8 August 2012

    Fix incorrect gh_symbol2newstr macro replacement.

libctl 3.2

20 July 2012

    Now works with Guile version 2.x (older versions are still
    supported).
    Add libctl_quiet variable to main.c so that libctl-using programs
    can suppress all output if desired (e.g. to avoid duplicate
    outputs on parallel machines).
    Added wedge object type for circular/cylindrical wedges, as a
    subclass of cylinder: (make wedge (center ...) (axis ...)
    (radius ...) ...) with two new properties: (wedge-angle ...)
    for the angle in radians, and (wedge-start v) for a vector v
    such that the wedge angles start at zero in the (v, axis) plane.
    [Caveat: subpixel averaging is currently inaccurate for the
    flat wedge edges.]
    list-type constructors now accept either (name ...elements...)
    or (name (list ...elements...)).
    Add vector3->exact function for to-integer rounding. Otherwise,
    ensure that interpolation results are floating-point to prevent
    type-conversion errors.
    Added ctl-set-prompt! to set interactive prompt in both old
    and new Guile versions.
    Rename string to char* in ctl-io.h for C++ compatibility.
    Bug fix in normal-to-object near corners of blocks.

libctl 3.1

5 June 2008

    Support specifying the location of the guile and guile-config
    programs with GUILE and GUILE_CONFIG environment variables in
    the configure script.
    Support for calling NLopt optimization library (also requires
    the program using libctl to be changed to link nlopt).
    New ellipsoid_overlap_with_object function, analogous to
    box_overlap_with_object function.
    Bug fix in include function for recent versions of Guile, to
    properly keep track of the current include directory.
    Bug fix in numerical-derivative routine, which didn't converge
    when the error was exactly zero.

libctl 3.0.3

27 February 2008

    Added "begin-timed" function, which is similar to "begin-time"
    except that it returns the value of the last statement (like
    "begin") rather than the time.
    Bug fix: allow classes to have boolean properties.
    Bug fixes for compilation under C++, thanks to David Foster:
    include missing string.h header and fixed gh_new_procedure
    prototype.

libctl 3.0.2

22 August 2006

    Fix minor Guile incompatibility on some systems.

libctl 3.0.1

5/1/2006

    Change shared-library version to 3:0:0 instead of 0:0:0. This
    avoids conflicts with shared library version numbers that has
    been assigned to earlier versions of libctl for Debian; thanks
    to Josselin Mouette for the suggestion.

libctl 3.0

4/1/2006

    Switch to use automake and libtool. Can now install shared
    libraries with --enable-shared.
    License is now GNU GPL (v2 or later) rather than the GNU LGPL,
    due to use of third-party GPL code for multi-dimensional
    integration (below).
    gen-ctl-io now supports separate generation of code and header
    files via --code and --header arguments. (Better for parallel
    make.) Also support a -o option to give a different output file
    name.
    gen-ctl-io can now export C++ code by using the --cxx flag.
    gen-ctl-io can now export SWIG .i files for automatic type
    conversion in SWIG wrapper generation, using the --swig flag.
    Backwards incompatible change: users must include their own
    ctl-io.h *before* ctlgeom.h, or you get ctlgeom-types.h instead
    (this is for use with the "stand-alone" libctlgeom.a library
    below.
    New multi-dimensional integration routines using adaptive
    cubature. (Much more efficient than nested 1d integrations.)
    Adapted in part from the HIntlib Library by Rudolf Schuerer
    and from the GNU Scientific Library (GSL) by Brian Gough.
    New interpolate-uniform function that tries to maintain a
    uniform distance between points (i.e. variable number of
    interpolated points between different list elements, as needed).
    Now install a "stand-alone" libctlgeom.a library to make it
    easier to call geometry routines from non-Scheme code.
    New routines to compute overlap fraction of box with object,
    compute analytical normal vectors, etcetera. (For upcoming
    versions of Meep and MPB.) Also new routines to get the object
    of a point, not just the material. Also new routines to operate
    on a supplied geometry list parameter instead of using the
    global; unlike the old material_of_point_in_tree functions,
    these functions do not shift the argument to the unit cell,
    but you can use the new function shift_to_unit_cell to get this
    behavior.
    gen-ctl-io now generates object equal/copy functions.
    In unit-vector3, only return 0 when norm==0, not merely if it
    is small.
    Added one-sided numerical derivative routine.
    Define "verbose?" variable corresponding to main.c variable.
    (print) calls (flush-all-ports) to keep C and Scheme I/O in
    sync.
    Fix in find-root-deriv to prevent infinite loop in some cases
    where the root does not exist; thanks to XiuLun Yang for the
    bug report.
    Bug fix in make_hermitian_cmatrix3x3; thanks to Mischa Megens.

(wiz)

Update to Erlang/OTP R15B03-1

Changes in R15B03-1

After the release of R15B03 a very unfortunate bug in ssl:ssl_accept/2
(accept with timeout) was detected. This bug will have negative impact
on a number of popular http servers and server frameworks written in
Erlang.

The differences from R15B03 are in ssl-5.1.2 and erts-5.9.3.1.

Full log at http://www.erlang.org/download/otp_src_R15B03-1.readme

Changes in R15B03

Mostly bug fixes and small improvements.

Full log at http://www.erlang.org/download/otp_src_R15B03.readme

Changes in R15B02

Highlights

  OTP-8871  == ssl ==

    Experimental support for TLS 1.1 is now available, will be
    officially supported from OTP-R16. Thanks to Andreas Schultz
    for implementing the first version.

  OTP-8872  == ssl ==

    Experimental support for TLS 1.2 is now available, will be
    officially supported from OTP-R16. Thanks to Andreas Schultz
    for implementing the first version.

OTP-10113  == ssl ==

    Removed some bottlenecks increasing the applications
    parallelism especially for the client side.

Full log at http://www.erlang.org/download/otp_src_R15B02.readme

(asau)

Import libctl-3.2.1 as devel/libctl.
Packaged for wip by outpaddling and asau.

Libctl is a free Guile-based library implementing flexible control files for
scientific simulations.

(wiz)

Added misc/labelnation version 1.212

(wiz)

+ labelnation.

(wiz)

Remove straggler.

(wiz)

Added fonts/cantarell-fonts version 0.0.12

(wiz)

Import labelnation-1.212 as misc/labelnation.
Packaged for wip by solevis.

LabelNation is a command-line program for making labels: address labels,
business cards, or anything else involving regularly-arranged rectangles
on a printer-ready sheet. It is for users who are comfortable dealing with
text- and option-based configuration, as opposed to a graphical user interface.

(wiz)

+ cantarell-fonts.

(wiz)

Import cantarell-fonts-0.0.12 as fonts/cantarell-fonts.
Packaged for wip by ryo-on and myself.

The Cantarell font family is a contemporary Humanist sans serif
designed for on-screen reading.

Each font file currently contains 391 glyphs, and fully support
the following writing systems: Basic Latin, Western European,
Catalan, Baltic, Turkish, Central European, Dutch and Afrikaans.
To date, Pan African Latin has only 33% glyph coverage.

(wiz)

Updated www/firefox-l10n to 18.0.1

(ryoon)

Pullup tickets #4033 and #4034.

(tron)

Pullup ticket #4034 - requested by taca
www/contao211-translations: build fix

Revisions pulled up:
- www/contao211-translations/Makefile                          1.24
- www/contao211-translations/distinfo                          1.22
- www/contao211-translations/options.mk                        1.24

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Wed Jan 23 16:27:49 UTC 2013

  Modified Files:
  pkgsrc/www/contao211-translations: Makefile distinfo options.mk

  Log Message:
  Update contao211-translations to 201301180.

  * Handle change of MASTER_SITES's URL.
  * Update Czech, Persian, Finnish and Russian language files.

(tron)

Pullup ticket #4033 - requested by taca
pkgsrc/databases/phpldapadmin: security patch

Revisions pulled up:
- databases/phpldapadmin/Makefile                              1.34
- databases/phpldapadmin/distinfo                              1.12-1.13
- databases/phpldapadmin/patches/patch-htdocs_add__value__form.php 1.1
- databases/phpldapadmin/patches/patch-htdocs_export.php        1.1
- databases/phpldapadmin/patches/patch-htdocs_logout.php        1.1
- databases/phpldapadmin/patches/patch-lib_QueryRender.php      1.1-1.2
- databases/phpldapadmin/patches/patch-lib_export__functions.php 1.1
- databases/phpldapadmin/patches/patch-lib_functions.php        1.1

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Mon Jan 21 12:43:23 UTC 2013

  Modified Files:
  pkgsrc/databases/phpldapadmin: Makefile distinfo
  Added Files:
  pkgsrc/databases/phpldapadmin/patches:
      patch-htdocs_add__value__form.php patch-htdocs_export.php
      patch-htdocs_logout.php patch-lib_QueryRender.php
      patch-lib_export__functions.php patch-lib_functions.php

  Log Message:
  Add some patches from development repository.

  * Add fix for CVE-2012-1114/CVE-2012-1115 from repository.
  * Unset $_SESSION['ACTIVITY'] on logout from repository.
  * Fix XSS in query from repository.
  * Add support for SHA512 with OpenLDAP from repository.

  Bump PKGREVISION.

---
  Module Name: pkgsrc
  Committed By: obache
  Date: Tue Jan 22 11:49:33 UTC 2013

  Modified Files:
  pkgsrc/databases/phpldapadmin: distinfo
  pkgsrc/databases/phpldapadmin/patches: patch-lib_QueryRender.php

  Log Message:
  Note CVE-2012-0834

(tron)