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2024-05-13 04:41:37 UTC Now

2012-11-03 18:49:36 UTC MAIN commitmail json YAML

Updated www/firefox-l10n to 16.0.2

(ryoon)

2012-11-03 18:48:53 UTC MAIN commitmail json YAML

Update to 16.0.2

* Sync with www/firefox 16.0.2

(ryoon)

2012-11-03 18:47:46 UTC MAIN commitmail json YAML

Updated www/seamonkey-l10n to 2.13.2

(ryoon)

2012-11-03 18:47:08 UTC MAIN commitmail json YAML

2012-11-03 18:46:41 UTC MAIN commitmail json YAML

Updated www/seamonkey to 2.13.2

(ryoon)

2012-11-03 18:45:27 UTC MAIN commitmail json YAML

Update to 2.13.2

Changelog:
Fixed in SeaMonkey 2.13.2
MFSA 2012-90 Fixes for Location object issues
MFSA 2012-67 Installer will launch incorrect executable following new installation

Fixed in SeaMonkey 2.13.1
MFSA 2012-89 defaultValue security checks not applied
MFSA 2012-88 Miscellaneous memory safety hazards (rv:16.0.1)

(ryoon)

2012-11-03 18:11:47 UTC MAIN commitmail json YAML

2012-11-03 14:43:40 UTC MAIN commitmail json YAML

Updated www/elinks to 0.12rc6

(wiz)

2012-11-03 14:43:25 UTC MAIN commitmail json YAML

Update to 0.12pre6. Remove javascript option since
a) lang/see support was removed (see below)
b) lang/spidermonkey and wip/spidermonkey185 aren't recognized

ELinks 0.12pre6
---------------

Security fix:

* bug 1124, CVE-2012-4545: Do not delegate GSSAPI credentials in HTTP
  Negotiate or GSS-Negotiate authentication.  Reported by Marko Myllynen.
  (ELinks 0.12pre1 was the first release that supported GSSAPI; earlier
  releases are not vulnerable.)

Fixed crashes and hangs:

* critical bug 943: Don't let user JavaScripts call any methods of
  ``elinks.action'' in tabs that do not have the focus.  If a tab was
  closed with ``elinks.action.tab_close'' while it had pop-up windows,
  ELinks could crash; as a precaution, don't allow other actions
  either.  (ELinks 0.12pre1 was the first release that supported
  ``elinks.action''.)
* critical bug 1083: Avoid an infinite loop when trying to decompress
  malformed data.  Caused by the bug 1068 fix in ELinks 0.12pre3.
* Fix a possible crash or information disclosure on big-endian 64-bit
  systems using HTTP Negotiate or GSS-Negotiate authentication.

Incompatibilities:

* Dropped support for SEE.  (ELinks 0.12pre1 was the first release
  that supported SEE.)
* Guile 2.0.0 (released on 2011-02-16) changed its license to
  LGPLv3-or-later, which is not compatible with the GPLv2 that covers
  ELinks.  Also, Guile has deprecated many of the functions that
  ELinks calls.

Other changes:

* major bug 764: Correctly initialize options on big-endian 64-bit
  systems.
* bug 983: Give preference to the Content-Type specified in the HTTP
  header over that specified via the HTML meta tag.
* bug 1084: Allow option names containing '+' and '*' in the option
  manager.
* bug 1112: Map most numeric character references € ... Ÿ
  to graphical characters also when the output charset is UTF-8.
  (ELinks 0.12pre1 was the first release that supported UTF-8 as the
  terminal charset, and ELinks 0.12pre5 was the first release that
  supported UTF-8 as the dump charset.)
* minor bug 1113: Fix a small memory leak if a mailcap file is malformed.
* minor bug 1114: Decode SGML entities and NCRs only once in link/@title
  and other attributes.
* build: Fix several warnings reported by GCC 4.7.1.  Harmless at
  runtime but could break the build if configured --enable-debug.
  (This version does not fix all such warnings.)

(wiz)

2012-11-03 14:30:20 UTC MAIN commitmail json YAML

Updated net/py-ptt to 1.9.0nb1

(imil)

2012-11-03 14:29:25 UTC MAIN commitmail json YAML

2012-11-03 14:20:33 UTC MAIN commitmail json YAML

Added net/py-irclib version 3.4.2

(imil)

2012-11-03 14:19:11 UTC MAIN commitmail json YAML

add & enable py-irclib

(imil)

2012-11-03 14:18:06 UTC MAIN commitmail json YAML

Initial import of py-irclib, version 3.4.2, into the NetBSD Packages Collection.

This library is intended to encapsulate the IRC protocol at a quite low level.
It provides an event-driven IRC client framework. It has a fairly thorough
support for the basic IRC protocol, CTCP and DCC connections.

(imil)

2012-11-03 13:57:50 UTC MAIN commitmail json YAML

Added devel/py-hgtools version 2.0.2

(imil)

2012-11-03 13:56:19 UTC MAIN commitmail json YAML

add & enable py-hgtools

(imil)

2012-11-03 13:55:16 UTC MAIN commitmail json YAML

Initial import of py-hgtools, version 2.0.2, into the NetBSD Packages
Collection.

hgtools builds on the setuptools_hg plugin for setuptools. hgtools provides
classes for inspecting and working with repositories in the Mercurial version
control system.

hgtools provides a plugin for setuptools that enables setuptools to find files
under the Mercurial version control system.

The classes provided by hgtools are designed to work natively with the
Mercurial Python libraries (in process) or fall back to using the command-line
program hg(1) if available. The command-line support is especially useful
inside virtualenvs that don't have access to a system-wide installed Mercurial
lib (i.e. when the virtualenv was created with --no-site-packages).

(imil)

2012-11-03 13:55:11 UTC MAIN commitmail json YAML

Updated graphics/viewnior to 1.3

(ryoon)

2012-11-03 13:54:21 UTC MAIN commitmail json YAML

Update to 1.3

Changelog:
Viewnior 1.3 released
New features:

    Wallpaper support for LXDE
    Hebrew translation

Fixes:

    Wallpaper fix for XFCE
    Minor fixes

Viewnior 1.2 released
New features:

    Improved menu interface
    Wallpaper support for Gnome 2, Gnome 3, XFCE and FluxBox
    --fullscreen argument to start in Fullscreen mode
    GConf independent

Fixes:

    Drop images with right click
    Save 'Auto resize' option between sessions

(ryoon)

2012-11-03 13:45:00 UTC MAIN commitmail json YAML

Fix build on DragonFly BSD. From TimH on pkgsrc-users.

(wiz)

2012-11-03 12:49:34 UTC MAIN commitmail json YAML

Updated ham/fldigi to 3.21.58

(mef)

2012-11-03 12:43:05 UTC MAIN commitmail json YAML

Bump 3.21.56 to 3.21.58
  * Maintenance release

-- Version 3.21.57
Escape aborts clean start
  * Modified default key handler to prevent "escaping" out of
    main dialog when no other key has been pressed.

TLF arq
  * Restored use of gmfsk_autosend file for TLF.
    - requested by new TLF maintainer, Tom Beierlein, DL1JBE

--- Version 3.21.58
Escape aborts
  * correction to commit d925c85c5d218d5e
----------------------------------------------------------------------

(mef)

2012-11-03 09:08:51 UTC MAIN commitmail json YAML

Correct directory name of "pulseaudio" package.

(tron)

2012-11-03 09:04:10 UTC MAIN commitmail json YAML

Bump revision of the correct packages after "pulseaudio" update.

(tron)

2012-11-03 01:58:38 UTC MAIN commitmail json YAML

2012-11-03 01:57:45 UTC MAIN commitmail json YAML

Updated audio/pulseaudio to 2.1

(ryoon)

2012-11-03 01:54:56 UTC MAIN commitmail json YAML

2012-11-03 01:02:35 UTC MAIN commitmail json YAML

Updated devel/bison to 2.6.4

(wiz)

2012-11-03 01:02:23 UTC MAIN commitmail json YAML

Update to 2.6.4:

* Noteworthy changes in release 2.6.4 (2012-10-23) [stable]

  Bison 2.6.3's --version was incorrect.  This release fixes this issue.

* Noteworthy changes in release 2.6.3 (2012-10-22) [stable]

** Bug fixes

  Bugs and portability issues in the test suite have been fixed.

  Some errors in translations have been addressed, and --help now directs
  users to the appropriate place to report them.

  Stray Info files shipped by accident are removed.

  Incorrect definitions of YY_, issued by yacc.c when no parser header is
  generated, are removed.

  All the generated headers are self-contained.

** Header guards (yacc.c, glr.c, glr.cc)

  In order to avoid collisions, the header guards are now
  YY_<PREFIX>_<FILE>_INCLUDED, instead of merely <PREFIX>_<FILE>.
  For instance the header generated from

    %define api.prefix "calc"
    %defines "lib/parse.h"

  will use YY_CALC_LIB_PARSE_H_INCLUDED as guard.

** Fix compiler warnings in the generated parser (yacc.c, glr.c)

  The compilation of pure parsers (%define api.pure) can trigger GCC
  warnings such as:

    input.c: In function 'yyparse':
    input.c:1503:12: warning: 'yylval' may be used uninitialized in this
                              function [-Wmaybe-uninitialized]
      *++yyvsp = yylval;
                ^

  This is now fixed; pragmas to avoid these warnings are no longer needed.

  Warnings from clang ("equality comparison with extraneous parentheses" and
  "function declared 'noreturn' should not return") have also been
  addressed.

(wiz)

2012-11-02 23:55:17 UTC MAIN commitmail json YAML

Updated ham/hamlib to 1.2.15.3

(gdt)

2012-11-02 23:54:45 UTC MAIN commitmail json YAML

Update to 1.2.15.3.
Note that MAKE_JOBS_SAFE=no seems unnecessary.
Set LICENSE.

Version 1.2.15.3
2012-11-01
* Fix configure.ac so that rigctld/rotcld work on Win32 platform
* Add NSIS script to build executable installer on Win32 platform
* Remove unsupported commands on IC-756 (non-Pro model) from AK6I
* Fix set_split in netrigctl.c to properly accept the split
value.  TNX, N2ADR.
* IC-R8500: Add RIG_LEVEL_AF to has_set_level.  TNX John, EI7IG
* ADAT updates from Frank, DG1SBG, needed for stable operation.

(gdt)

2012-11-02 22:30:31 UTC MAIN commitmail json YAML

2012-11-02 22:28:54 UTC MAIN commitmail json YAML

Use hw.usermem64 when available to truncation to less than 4GB on 64bit
architectures. Honour data and address space limits on all BSDs.  Explicitly
limit the heap size during bootstrap to 256MB.  This fixes e.g. my bulk
build, which is run with an AS limit of 2GB.  Since hw.usermem would
tell the bootstrap JVM that > 3GB are available, initialisation would
fail.  Bump revision.

(joerg)

2012-11-02 22:24:09 UTC MAIN commitmail json YAML

Remove the addition on ${LOCALBASE}/lib rpath to ldflags as this is already
done by the buildlink system.

(sbd)

2012-11-02 21:22:11 UTC MAIN commitmail json YAML

Move options from Makefile to options.mk and remove a duplicate .include of
mk/compiler.mk

(sbd)

2012-11-02 20:59:45 UTC MAIN commitmail json YAML

2012-11-02 20:59:07 UTC MAIN commitmail json YAML

Update to SBCL 1.1.1

changes in sbcl-1.1.1 relative to sbcl-1.1.0:
  * enhancement: WITH-COMPILATION-UNIT no longer grabs the world-lock.
    (COMPILE and COMPILE-FILE still do.)
  * optimization: the SPARC backend now supports the precise generational
    (GENCGC) garbage collection.  Enabled by default on Solaris/SPARC and
    Linux/SPARC.  Thanks to Raymond Toy (via CMUCL).
  * enhancement: add experimental support for the SB-THREAD feature and the
    timer facility on Windows.  Thanks to Dmitry Kalyanov and Anton Kovalenko.
    Threads are enabled by default, and this version of SBCL is considered
    to be the last and final release to officially support building with
    threads disabled.
  * optimization: The compiler no longer rotates loops in some cases where
    this transformation actually lead to worse code being generated.
  * bug fix: SB-CLTL2:MACROEXPAND-ALL correctly handles shadowing of
    symbol-macros by lexical bindings.
  * bug fix: stack allocation was prevented by high DEBUG declaration in
    several cases.
  * bug fix: SB-EXT:GC-LOGFILE signaled an error when no logfile was set.
    (thanks to SANO Masatoshi)
  * bug fix: PARSE-NATIVE-NAMESTRING performed non-native parsing when
    :JUNK-ALLOWED was true.
  * bug fix: type derivation inferred overly conservative types for
    unions of array types. (lp#1050768)

(asau)

2012-11-02 19:03:30 UTC MAIN commitmail json YAML

Updated sysutils/webmin to 1.600

(shattered)

2012-11-02 19:02:51 UTC MAIN commitmail json YAML

2012-11-02 16:07:33 UTC MAIN commitmail json YAML

2012-11-02 16:07:23 UTC MAIN commitmail json YAML

Update to 286:
285:
This release fixes two minor bugs, improves recovery from misconfigured
colors, and adds test scripts for building the FreeBSD port and
for demonstrating OSC 4 color-queries.
286:
This release fixes four bugs, chiefly a workaround for a bug in
GDM exposed by the change in patch #282 that identifies the window
manager. The other fixes add a check for misconfiguration of the
printerCommand resource and improve transformation of the manpage
to other formats.

(wiz)

2012-11-02 14:51:19 UTC MAIN commitmail json YAML

+ Motif-2.3.4, Sigil-0.6.0, bison-2.6.4, cairo-1.12.6, calibre-0.9.5,
  coreutils-8.20, cutter-1.2.2, ffmpeg-20121028.0.10.6, gramps3-3.4.2,
  gtkwave-3.3.41, horde-5.0.0, imp-6.0.0, ingo-3.0.0,
  kdevelop-4.4.0, kid3-2.2, kronolith-4.0.0,
  libtasn1-3.0, liferea-1.8.10, mono-3.0, ng-1.4.4 [pkg/47134],
  nginx-1.2.4, nut-18.3, opendkim-2.7.1, parallel-20121022,
  py-cairo-1.10.0, py-sip-4.14.1, py-urwid-1.1.0, rudiments-0.38,
  samba-3.6.9, spectrwm-2.1.0 [was scrotwm], stella-3.7.3,
  texmaker-3.5.1, turba-4.0.0, viewvc-1.1.17, vifm-0.7.4a,
  wine-devel-1.5.16, x264-devel-20121027, xterm-286.

(wiz)

2012-11-02 14:48:18 UTC MAIN commitmail json YAML

Updated net/Transmission-gui to 2.73

(wiz)

2012-11-02 14:48:07 UTC MAIN commitmail json YAML

Updated net/Transmission to 2.73

(wiz)

2012-11-02 14:47:58 UTC MAIN commitmail json YAML

Update to 2.73:

=== Transmission 2.73 (2012/10/18) ===
[http://trac.transmissionbt.com/query?milestone=2.73&group=component&order=severity All tickets closed by this release]
==== Mac ====
  * Fix crash on non-English localizations

(wiz)

2012-11-02 13:12:35 UTC MAIN commitmail json YAML

Added net/py-ptt version 1.9.0

(imil)

2012-11-02 13:10:04 UTC MAIN commitmail json YAML

add & enable py-ptt

(imil)

2012-11-02 13:08:31 UTC MAIN commitmail json YAML

Initial import of py-ptt, version 1.9.0, into the NetBSD Packages Collection.

Python Twitter Tools (PTT) includes a Twitter API, command-line tool, and IRC
bot. It is developed by Mike Verdone and the Python Twitter Tools developer
team.

The Minimalist Twitter API for Python is a Python API for Twitter, everyone's
favorite Web 2.0 Facebook-style status updater for people on the go. Also
included is a twitter command-line tool for getting your friends' tweets and
setting your own tweet from the safety and security of your favorite shell.
Also included is an IRC bot that can announce Twitter updated to an IRC
channel.

(imil)

2012-11-02 08:26:59 UTC MAIN commitmail json YAML

Move a hack from the Makefile to hacks.mk

(sbd)

2012-11-02 08:18:50 UTC MAIN commitmail json YAML

Tidy-up the perl5-post-install commands.
(removing two missed references to PERL5_SCRIPTDIR and PERL5_MAN1DIR while at
it)

(sbd)

2012-11-02 07:55:31 UTC MAIN commitmail json YAML

Remove the unneeded lang/perl5/dirs.mk inclusion.

(sbd)

2012-11-02 07:36:24 UTC MAIN commitmail json YAML

Remove the uneeded PERL5_SCRIPTDIR and PERL5_MAN1DIR variables.

(sbd)

2012-11-02 07:29:31 UTC MAIN commitmail json YAML

Remove the dynamic plist additions and add the two files to the static PLIST

(sbd)

2012-11-02 01:46:17 UTC MAIN commitmail json YAML

Updated devel/mercurial to 2.4

(wiz)

2012-11-02 01:46:06 UTC MAIN commitmail json YAML

Update to 2.4:

Mercurial 2.4 (2012-11-1)
This is a regularly-scheduled feature release.

1.1. Core features
    amend: support for ChangesetEvolution if enabled
    bookmarks: deactivate current bookmark if no name is given
    bookmarks: teach the -r option to use revsets
    bookmarks: disallow bookmarks named 'tip', '.', or 'null'
    clone: substantial speedup to clone on repo with a lots of heads (issue3378)
    clone: activate bookmark specified with --updaterev
    clone: update to @ bookmark if it exists
    log: substantial speedup for untracked files (issue1340)
    revsets: add branchpoint() function
    resolve: commit the changes after each item resolve (issue3638)
    subrepo, hghave: use "svn --version --quiet" to determine version number
    subrepo: setting LC_MESSAGES only works if LC_ALL is empty or unset
    templatefilters: add parameterized date method
    templatefilters: add parameterized fill function
    templatefilters: avoid traceback caused by bogus date input (issue3344)
    templatekw: add p1rev, p1node, p2rev, p2node keywords
    templatekw: add parent1, parent1node, parent2, parent2node keywords
    templater: abort when a template filter raises an exception (issue2987)
    templater: add if/ifeq conditionals
    templater: add sub() function
    templating: make new-style templating features work with command line lists
    bookmarks: take ChangesetEvolution into account when updating (issue3561)
    speedup various operation related to ChangesetEvolution
    add detection of changeset bumped by ChangesetEvolution

1.2. Extension features
    color: add additional changeset.phase label to log.changeset and log.parent
    color: enabled color support for export command (issue1507)
    color: support for all grep fields
    contrib: add a commit synthesizer for reproducing scaling problems
    histedit: refuse to edit public changeset
    histedit: replaces patching logic by merges
    histedit: support for ChangesetEvolution if enabled
    largefiles: always create the cache and standin directories when cloning
    largefiles: distinguish "no remote repo" from "no files to upload" (issue3651)
    largefiles: fix a traceback in lfconvert if a largefile is missing (issue3519)
    mq: improve qqueue message with patches applied (issue3036)
    mq: update bookmarks during qrefresh
    notify: support revset selection for subscriptions
    rebase: support for ChangesetEvolution if enabled
    record: checks for valid username before starting recording process (issue3456)
    record: fix display of non-ASCII names in chunk selection

1.3. Fixes
    amend: fix incompatibity between logfile and message option (issue3675)
    amend: wrap all commit operations in a single transaction
    bookmarks: abort when incompatible options are used (issue3663)
    bookmarks: avoid redundant creation/assignment of "validdests" in "validdest()"
    bookmarks: check bookmark format during rename (issue3662)
    bookmarks: when @ bookmark diverges, don't double the @ sign (BC)
    bookmark: prevent crashing when a successor is unknown locally (issue3680)
    clone: activate @ bookmark if updating to it
    clone: don't %-escape the default destination (issue3145)
    clone: make sure to use "@" as bookmark and "default" as branch (issue3677) (BC)
    clone: print bookmark name when clone activates a bookmark
    commands: don't infer repo for commands like update (issue2748)
    convert: normalize paths in filemaps (issue3612)
    dirstate: handle large dates and times with masking (issue2608)
    dirstate: handle dangling junctions on windows (issue2579)
    filemerge: use util.shellquote when calling merge (issue3581)
    hgweb: make the escape filter remove null characters (issue2567)
    http2: make it possible to connect w/o ssl on port 443
    icasefs: make case-folding collision detection as deletion aware (issue3648)
    largefiles: don't copy largefiles from working dir to the store while converting
    largefiles: respect the rev when reading standins in copytostore() (issue3630)
    largefiles: use 'default' instead of 'default-push' when pulling (issue3584)
    mq: fix qrefresh case sensitivity (issue3271)
    patchbomb: respect --in-reply-to for all mails if no intro message is sent
    remove: don't return error on directories with tracked files
    revset: accept @ in unquoted symbols (issue3686)
    scmutil: add mustaudit delegation to filtervfs (issue3673)
    subrepo: only do clean update when overwrite is set (issue3276)
    subrepo: subrepo isolation, pass baseui when cloning a new subrepo (issue2904)
    update: check for missing files with --check (issue3595) (BC)
    url: use open and not url.open for local files (issue3624)
    verify: fix all doubled-slash sites (issue3665)
    wireproto: fix pushkey hook failure and output on remote http repo

(wiz)

2012-11-02 00:48:04 UTC MAIN commitmail json YAML

Set ONLY_FOR_PLATFORM based on the _ONLY_FOR_PLATFORM for each accepted JVM.

(sbd)

2012-11-01 20:05:18 UTC MAIN commitmail json YAML

It is really a lot more likely that 4.6.0 is meant here...

(joerg)

2012-11-01 19:55:38 UTC MAIN commitmail json YAML

2012-11-01 19:53:04 UTC MAIN commitmail json YAML

2012-11-01 19:52:47 UTC MAIN commitmail json YAML

2012-11-01 19:52:03 UTC MAIN commitmail json YAML

2012-11-01 19:50:59 UTC MAIN commitmail json YAML

2012-11-01 19:49:32 UTC MAIN commitmail json YAML

2012-11-01 19:47:17 UTC MAIN commitmail json YAML

2012-11-01 19:45:13 UTC MAIN commitmail json YAML

Ensure consistent ABI attributes for ppc_init_physical_memory. Bump
revision.

(joerg)

2012-11-01 19:44:17 UTC MAIN commitmail json YAML

2012-11-01 19:43:42 UTC MAIN commitmail json YAML

2012-11-01 19:42:02 UTC MAIN commitmail json YAML

2012-11-01 19:40:08 UTC MAIN commitmail json YAML

2012-11-01 19:39:31 UTC MAIN commitmail json YAML

Fix xfree return type. Add some missing includes.

(joerg)

2012-11-01 19:35:20 UTC MAIN commitmail json YAML

2012-11-01 19:34:15 UTC MAIN commitmail json YAML

2012-11-01 19:33:19 UTC MAIN commitmail json YAML

2012-11-01 19:32:44 UTC MAIN commitmail json YAML

Don't order function pointers directly. Don't use non-literals as format
strings. Fix return type of intermediate used for return value of
wcrtomb.

(joerg)

2012-11-01 19:30:58 UTC MAIN commitmail json YAML

Rename log to my_log to avoid conflict with libm.

(joerg)

2012-11-01 19:29:20 UTC MAIN commitmail json YAML

2012-11-01 19:28:27 UTC MAIN commitmail json YAML

2012-11-01 19:27:36 UTC MAIN commitmail json YAML

2012-11-01 19:26:50 UTC MAIN commitmail json YAML

2012-11-01 19:26:15 UTC MAIN commitmail json YAML

2012-11-01 16:48:12 UTC MAIN commitmail json YAML

Patch from Jan-Jaap van der Heijden for IRIX

(sjg)

2012-11-01 14:04:58 UTC MAIN commitmail json YAML

libedit in older NetBSD is too old. Use the readline package instead.

(mlelstv)

2012-11-01 08:55:02 UTC MAIN commitmail json YAML

Updated graphics/cairo to 1.12.6nb3

(wiz)

2012-11-01 08:54:47 UTC MAIN commitmail json YAML

Bring back previous patch in correct version to fix SHM part of
build on NetBSD-5 with native Xorg.

Additionally, disable GL support since NetBSD-5's MesaLib is too old and,
according to upstream, cairo-gl "is only really being experimented
with currently by toy applications".

Bump PKGREVISION.

Tested by Andreas Gustafsson and David Brownlee.

(wiz)

2012-11-01 04:09:24 UTC MAIN commitmail json YAML

Added biology/plinkseq version 0.08

(asau)

2012-11-01 04:08:03 UTC MAIN commitmail json YAML

2012-11-01 04:06:21 UTC MAIN commitmail json YAML

Import PLINK/SEQ version 0.08 as biology/plinkseq
Packaged by Jason Bacon for pkgsrc-wip.

PLINK/SEQ is an open-source C/C++ library for working with human genetic
variation data. The specific focus is to provide a platform for analytic tool
development for variation data from large-scale resequencing and genotyping
projects, particularly whole-exome and whole-genome studies. It is independent
of (but designed to be complementary to) the existing PLINK package.

(asau)

2012-10-31 22:57:40 UTC MAIN commitmail json YAML

Sort options and their descriptions.

(wiz)

2012-10-31 22:55:41 UTC MAIN commitmail json YAML

Fix xref, sort sections, use more markup, remove superfluous Pp.

(wiz)

2012-10-31 22:49:05 UTC MAIN commitmail json YAML

Updated emulators/yabause to 0.9.11.1nb9

(wiz)

2012-10-31 22:48:54 UTC MAIN commitmail json YAML

Put gtk and qt in a mutual-exclusive group, and switch to qt by default,
since that's preferred by upstream. From diro@nixsyspaus.org in PR 47148.

Bump PKGREVISION.

(wiz)

2012-10-31 22:45:48 UTC MAIN commitmail json YAML

Update HOMEPAGE, from diro@nixsyspaus.org in PR 47148.

(wiz)

2012-10-31 22:44:40 UTC MAIN commitmail json YAML

Fix COMMENT, from diro@nixsyspaus.org in PR 47148.

(wiz)

2012-10-31 20:39:26 UTC MAIN commitmail json YAML

Update to the latest version in the rt3 train. Contains security updates:

  3.8.15 Release Notes

  This release resolves a number of security vulnerabilities.
  It resolves CVE-2012-4730, CVE-2012-4732, CVE-2012-4734, CVE-2012-4735,
  and CVE-2012-4884.

  In addition to these security fixes, RT 3.8.15 contains support for
  partitioned PGP messages.

  3.8.14 Release Notes

  This release contains two fixes related to the 3.8.12 security release.

  Access to search results URLs is now CSRF whitelisted, based on user
  feedback.
  An error in rt-email-dashboards has been corrected.

  3.8.13 Release Notes

  This release contains an important bugfix over the 3.8.12 security
  release:

    * Fix sending email with the 'perl-script' mod_perl handler, by
      ensuring that STDIN was always on FD 0 before calling IPC::Open2.
      This failure showed as either SIGPIPE or abnormal exit codes when
      running sendmail.

    * Fix for "Undefined value assigned to typeglob" and "Bad file
      descriptor: core_output_filter" errors caused by the above change, by
      ensuring that both FD 0 and FD 1 are prevented from being claimed by
      Apache.  This error only arose with the perfork MPM and mod_perl <=
      2.0.4.

(spz)

2012-10-31 19:52:19 UTC MAIN commitmail json YAML

+ netatalk-3.0.1

(dholland)

2012-10-31 16:15:14 UTC pkgsrc-2012Q3 commitmail json YAML

2012-10-31 16:14:30 UTC pkgsrc-2012Q3 commitmail json YAML

Pullup ticket #3956 - requested by morr
pkgsrc/devel/RTFM: security update

Revisions pulled up:
- devel/RTFM/Makefile                                          1.10
- devel/RTFM/distinfo                                          1.4

---
  Module Name: pkgsrc
  Committed By: morr
  Date: Tue Oct 30 20:38:09 UTC 2012

  Modified Files:
  pkgsrc/devel/RTFM: Makefile distinfo

  Log Message:
  Update to RTFM 2.4.5.

  It contains security fix for bug, which can be exploited by malicious users to
  bypass certain security restrictions (CVE-2012-4731).

(tron)

2012-10-31 14:47:08 UTC MAIN commitmail json YAML

Markup to prevent "e.g." from being misinterpreted as the end of a sentence.
(Not bumping the version number for this.)

(apb)

2012-10-31 14:41:55 UTC MAIN commitmail json YAML

Add the ability for libkver to override all four of ostype, osrelease,
machine, and machine_arch.  Add a helper script to simplify use of
libkver.  Set VERSION=0.7.

An earlier version of this change was reviewed by seb@NetBSD.org.

(apb)

2012-10-31 13:09:48 UTC MAIN commitmail json YAML

Don't lie to pkgsrc: this is not a GNU configure script.

(wiz)

2012-10-31 13:06:38 UTC MAIN commitmail json YAML

Updated graphics/cairo to 1.12.6nb2

(wiz)

2012-10-31 13:06:22 UTC MAIN commitmail json YAML

Remove previous two patches again, since they make cairo fail on NetBSD-6.
Reported by abs.
Bump PKGREVISION.

(wiz)

2012-10-31 12:34:28 UTC MAIN commitmail json YAML

Add two build dependencies needed for creating the *.8 man pages.

(wiz)

2012-10-31 11:25:50 UTC MAIN commitmail json YAML

Drop superfluous PKG_DESTDIR_SUPPORT, "user-destdir" is default these days.

(asau)

2012-10-31 11:19:55 UTC MAIN commitmail json YAML

2012-10-31 06:19:53 UTC MAIN commitmail json YAML

Updated parallel/openmpi to 1.6.3

(asau)

2012-10-31 06:19:35 UTC MAIN commitmail json YAML

Update to OpenMPI 1.6.3

Version 1.6.3 is a minor bugfix release.
All users are encouraged to upgrade to v1.6.3 when possible.

Note that v1.6.3 is ABI compatible with the entire v1.5.x and
v1.6.x series, but is not ABI compatible with the v1.4.x series.
See http://www.open-mpi.org/software/ompi/versions/ for a
description of Open MPI's release methodology.

Here is a list of changes in v1.6.3 as compared to v1.6.2:

- Fix mpirun --launch-agent behavior when a prefix is specified.
  Thanks to Reuti for identifying the issue.
- Fixed memchecker configury.
- Brought over some compiler warning squashes from the development trunk.
- Fix spawning from a singleton to multiple hosts when the "add-host"
  MPI_Info key is used.  Thanks to Brian Budge for pointing out the
  problem.
- Add Mellanox ConnextIB IDs and max inline value.
- Fix rankfile when no -np is given.
- FreeBSD detection improvement.  Thanks to Brooks Davis for the
  patch.
- Removed TCP warnings on Windows.
- Improved collective algorithm selection for very large messages.
- Fix PSM MTL affinity settings.
- Fix issue with MPI_OP_COMMUTATIVE in the mpif.h bindings.  Thanks to
  Ake Sandgren for providing a patch to fix the issue.
- Fix issue with MPI_SIZEOF when using CHARACTER and LOGICAL types in
  the mpi module.  Thanks to Ake Sandgren for providing a patch to fix
  the issue.

(asau)

2012-10-31 04:54:40 UTC MAIN commitmail json YAML

Respect user settings of not using builtin termcap/curses.

(asau)

2012-10-31 03:28:40 UTC MAIN commitmail json YAML

Add closing "]".

(asau)

2012-10-30 23:34:38 UTC MAIN commitmail json YAML

Ignore subversion if detected (don't install experimental tool nmap-update)

(pettai)

2012-10-30 23:30:19 UTC MAIN commitmail json YAML

2012-10-30 22:44:26 UTC MAIN commitmail json YAML

Note update of editors/vim-*

(morr)

2012-10-30 22:39:07 UTC MAIN commitmail json YAML

Update to patchlevel 712.

Changes:

7.3.654  creating Vim dictionary from Python an empty key might be used
7.3.655  64 bit MingW xpm .a file is missing
7.3.656  internal error in :pyeval
7.3.657  Python bindings silently truncate string values containing NUL
7.3.658  NUL bytes truncate strings when converted from Python
7.3.659  recent Python changes are not tested
7.3.660  ":help !" jumps to help for ":!"
7.3.661  (after 7.3.652) SEGV in Python code
7.3.662  can't build Ruby interface with Ruby 1.9.3
7.3.663  end of color scheme name not clear in E185
7.3.664  buffer overflow in unescaping multi-byte characters
7.3.665  MSVC 11 is not supported
7.3.666  Win32.mak can't be found
7.3.667  unused variables in Perl interface
7.3.668  loading Perl dynamically still uses static library
7.3.669  when building with Cygwin loading Python dynamically fails
7.3.670  tiny memory leak when throwing exception in Python
7.3.671  more Python code can be shared between Python 2 and 3
7.3.672  not possible to lock/unlock lists in Python interface
7.3.673  "gN" while 'selection' is "exclusive" misses one character
7.3.674  can't compile with Lua/dyn on Cygwin
7.3.675  accessing uninitialized memory with a very long file name
7.3.676  Ruby compilation on Windows 32 bit doesn't work
7.3.677  buf_spname() is used inconsistently
7.3.678  Ruby .so name may not be correct
7.3.679  Ruby detection uses Config, newer Ruby versions use RbConfig
7.3.680  some files missing in the list of distributed files
7.3.681  list of distributed files picks up backup files
7.3.682  (after 7.3.677) compiler complains about incompatible types
7.3.683  ":python" may crash when vimbindeval() returns None
7.3.684  "make test" does not delete lua.vim
7.3.685  no test for what patch 7.3.673 fixes
7.3.686  cannot use CTRL-\ e mapping when entering an expression
7.3.687  test 16 fails when $DISPLAY is not set
7.3.688  Python 3.3 is not supported
7.3.689  MzScheme and Lua may use a NULL string
7.3.690  crash with directory name equal to maximum path length
7.3.691  state specific to the Python thread is discarded
7.3.692  can't build GTK version with GTK 2.0
7.3.693  can't make 'softtabstop' follow 'shiftwidth'
7.3.694  'shiftwidth' is not so easy to use in indent files
7.3.695  balloon cannot show multi-byte text
7.3.696  message about added spell language can be wrong
7.3.697  leaking resources when setting GUI font
7.3.698  Python 3 does not preserve state beween commands
7.3.699  manually set 'ttymouse' is overruled by automatic detection
7.3.700  cannot detect URXVT and SGR mouse support
7.3.701  MS-Windows: Crash with stack overflow when setting 'encoding'
7.3.702  nmake from VS6 service pack 6 is not recognized
7.3.703  when 'undofile' is reset the hash is computed unnecessarily
7.3.704  repeating "cgn" does not always work correctly
7.3.705  mouse features are not in alphabetical order
7.3.706  (after 7.3.697) can't build Motif version
7.3.707  (after 7.3.701) library name with non-latin characters fails
7.3.708  filler lines above the first line may be hidden
7.3.709  compiler warning for unused argument
7.3.710  (after 7.3.704) "fn" is broken
7.3.711  (after 7.3.688) vim.current.buffer is not available
7.3.712  nmake from VS2010 SP1 is not recognized

pkgsrc changes:
- take maintainership of package
- switch to single tarball, created from vim's hg, instead of downloading > 700 files
- which resulted in changes in PLIST in vim-share
- some minor changes to DESCR files (add more vim guis)
- reset PKGREVISION on vim-gtk2
- add new files to vim-lang

(morr)

2012-10-30 22:34:20 UTC MAIN commitmail json YAML

Note that gnuradio works with swig 2.

(gdt)

2012-10-30 22:07:14 UTC MAIN commitmail json YAML

Updated mail/exim to 4.80.1

(abs)

2012-10-30 20:45:55 UTC MAIN commitmail json YAML

Updated misc/vttest to 20120506

(shattered)

2012-10-30 20:45:06 UTC MAIN commitmail json YAML

Update to vttest-20120506; 7 years worth of changes omitted.

(shattered)

2012-10-30 20:40:55 UTC MAIN commitmail json YAML

Note update of devel/RTFM

(morr)

2012-10-30 20:38:09 UTC MAIN commitmail json YAML

Update to RTFM 2.4.5.

It contains security fix for bug, which can be exploited by malicious users to
bypass certain security restrictions (CVE-2012-4731).

(morr)

2012-10-30 20:18:51 UTC MAIN commitmail json YAML

2012-10-30 20:14:28 UTC MAIN commitmail json YAML

2012-10-30 20:13:35 UTC MAIN commitmail json YAML

add a pkg for rhythmbox-2.98 which is based on gobject-introspection
instead of py-gtk
still somewhat minimalistic, but plays files and streams for me

(drochner)

2012-10-30 20:12:20 UTC MAIN commitmail json YAML

Updated mail/exim to 4.80.1

Exim version 4.80.1
-------------------

PP/01 SECURITY: protect DKIM DNS decoding from remote exploit.
      CVE-2012-5671
      This, or similar/improved, will also be change PP/11 of 4.81.

See: https://secunia.com/advisories/51098/

(abs)

2012-10-30 20:05:52 UTC MAIN commitmail json YAML

2012-10-30 18:48:33 UTC MAIN commitmail json YAML

allow PKG_CONFIG_PATH to be set by the pkg, needed
for gobject-introspection users

(drochner)

2012-10-30 16:55:08 UTC MAIN commitmail json YAML

Documentation suitable for yelp requires itstool to build.

(prlw1)

2012-10-30 16:14:29 UTC MAIN commitmail json YAML

Updated games/onscripter to 20121029

(tsutsui)

2012-10-30 16:13:37 UTC MAIN commitmail json YAML

Add description about onscripter-pda for games/onscripter.

(tsutsui)

2012-10-30 16:09:54 UTC MAIN commitmail json YAML

Update onscripter to 20121019.

pkgsrc changes:
- add PKG_OPTION onscripter-pda that enables PDA_AUTOSIZE option
  to fit window size to screen on small PDA devices like W-ZERO3 and Zaurus

upstream changes since 20120926:

20121029:
- fix compiler error on iOS target build environment

20121019: serious bug fix
- fix memory leak per rendering a glyph, slipped in since 20050819

20121016:
- reimplement yesnobox insn to allow yes/no choice in dialog
- implement okcancelbox insn
- enlarge buttons in yesnobox and okcancelbox dialogs
- allow mapping right click to no/cancle in yesnobox and okcancelbox insns

(tsutsui)

2012-10-30 14:50:15 UTC MAIN commitmail json YAML

Updated net/p5-NetAddr-IP to 4.066

(wen)

2012-10-30 14:48:38 UTC MAIN commitmail json YAML

Update to 4.066

Upstream changes:
4.066 Mon Oct 29 13:30:14 PDT 2012
        update Lite.pm v1.47 to support bracketed IPv6 URI notation
        as described in RFC-3986
        Thanks to Quanah Gibson-Mount mishikal@yahoo.com

(wen)

2012-10-30 14:38:28 UTC MAIN commitmail json YAML

Updated security/p5-Crypt-CBC to 2.31

(wen)

2012-10-30 14:35:37 UTC MAIN commitmail json YAML

Update to 2.31

Upstream changes:
2.31    Tue Oct 30 07:03:40 EDT 2012
- Fixes to regular expressions to avoid rare failures to
          correctly strip padding in decoded messages.
        - Add padding type = "none".
        - Both fixes contributed by Bas van Sisseren.

(wen)

2012-10-30 13:43:50 UTC MAIN commitmail json YAML

2012-10-30 13:26:51 UTC MAIN commitmail json YAML

2012-10-30 13:24:32 UTC MAIN commitmail json YAML

2012-10-30 12:56:00 UTC MAIN commitmail json YAML

2012-10-30 12:54:15 UTC MAIN commitmail json YAML

2012-10-30 12:53:05 UTC MAIN commitmail json YAML

2012-10-30 12:49:02 UTC MAIN commitmail json YAML

sync w/ base pkg, reset PKGREV

(drochner)

2012-10-30 12:46:30 UTC MAIN commitmail json YAML

2012-10-29 14:54:11 UTC MAIN commitmail json YAML

at-spi2 and freeciv are already updated.

(prlw1)

2012-10-29 14:49:06 UTC MAIN commitmail json YAML

Updated editors/gedit3 to 3.6.1

(prlw1)

2012-10-29 14:48:41 UTC MAIN commitmail json YAML

Update gedit3 to 3.6.1

- File Browser side panel improvements (Ignacio Casal Quinteiro)
- Fix print preview in landscape mode (Adrian Johnson)
- Handle a command line specifying a big line number (Paolo Borelli, David Toton)
mprovements in snippets plugin (Jesse van den Kieboom)
- Use autoreconf instead gnome-autogen (Javier Jard坦n)
- Extensive snippet collection for docbook
- Improved html snippets (Jaseem Abid)
- Misc bugfixes
- New and updated translations
c.f., http://git.gnome.org/browse/gedit/plain/NEWS?id=3.6.1

(prlw1)

2012-10-29 14:40:47 UTC MAIN commitmail json YAML

Updated graphics/eog3 to 3.6.1

(prlw1)

2012-10-29 14:40:27 UTC MAIN commitmail json YAML

Update eog3 to 3.6.1

Bug fixes, translation updates and changes such as:
* Unify navigation in zoomed and unzoomed modes (Federico Mena Quintero)
* Support for per-instance plugins (Felix Riemann)
See http://git.gnome.org/browse/eog/plain/NEWS?id=3.6.1 for more detail.

(prlw1)

2012-10-29 14:30:33 UTC MAIN commitmail json YAML

bump for gnome-desktop3 update

(prlw1)

2012-10-29 14:29:45 UTC MAIN commitmail json YAML

Updated x11/gnome-desktop3 to 3.6.1

(prlw1)

2012-10-29 14:29:27 UTC MAIN commitmail json YAML

2012-10-29 12:46:51 UTC MAIN commitmail json YAML

Updated misc/yelp3 to 3.6.1

(prlw1)

2012-10-29 12:46:30 UTC MAIN commitmail json YAML

Update yelp3 to 3.6.1

* Fixed gettext warnings for man and info
* Allow dots in man page names, #676482 (Matthias Clasen)
* Fixed new-style Mallard conditional processing
* Updated translations

(prlw1)

2012-10-29 12:44:18 UTC MAIN commitmail json YAML

Updated textproc/yelp-xsl to 3.6.1

(prlw1)

2012-10-29 12:43:55 UTC MAIN commitmail json YAML

Updated textproc/itstool to 1.2.0

(prlw1)

2012-10-29 12:43:21 UTC MAIN commitmail json YAML

Update yelp-xsl to 3.6.1

* Added support for depth attribute on section links
* Improved various bits of the build process (Colin Walters)
* Corrected jQuery.Syntax license info (Steve Magoun)
* Updated translations

(prlw1)

2012-10-29 12:41:01 UTC MAIN commitmail json YAML

Update itstool to 1.2.0

* Added new "join mode" for multilingual XML formats
* Correctly handle ITS version attribute
* Better handling of multiple localization notes
* XML path markers are now in dedicated comments
* Show language code when failing to get translation from PO
* Added more regression tests
* Handle UTF-8 in attribute values
* Don't output non-translatable external ref messages
* Better error handling

(prlw1)

2012-10-29 12:37:37 UTC MAIN commitmail json YAML

Updated sysutils/gsettings-desktop-schemas to 3.6.0

(prlw1)

2012-10-29 12:37:07 UTC MAIN commitmail json YAML

Update gsettings-desktop-schemas to 3.6.0

* Change default list of input sources to be empty, so the
  default layout is inherited from the current settings
* Add option to show all the available input sources in the UI
* Add xkb-options key to input-sources
* Add colour saturation setting for the magnifier
* Change default keyboard shortcut for "Maximise"
* Add show-notifications setting (#677640)
* Change the default mouse-button-modifier to Super (#607797)
* Add brightness and contrast preferences (#645665)
* Add input-sources schema (#676101)
* Translation updates

(prlw1)

2012-10-29 11:33:39 UTC MAIN commitmail json YAML

Updated lang/coq to 8.4

(jaapb)

2012-10-29 11:33:18 UTC MAIN commitmail json YAML

Taken over maintainership (as discussed with previous maintainer,
richards@cs.princeton.edu). Updated package to use PLIST_VARS and CONF_FILES.
Updated coq to version 8.4. Changes include:

Logic
- Standard eta-conversion now supported (dependent product only).
- Guard condition improvement: subterm property is propagated through beta-redex
  blocked by pattern-matching, as in "(match v with C .. => fun x => u end) x";
  this allows for instance to use "rewrite ... in ..." without breaking
  the guard condition.
Vernacular commands
- The "Reset" command is now supported again in files given to coqc or Load.
- "Show Script" now indents again the displayed scripts. It can also work
  correctly across Load'ed files if the option "Unset Atomic Load" is used.
- "Open Scope" can now be given the delimiter (e.g. Z) instead of the full
  scope name (e.g. Z_scope).
- Commands "Back" and "BackTo" are now handling the proof states. They may
  perform some extra steps of backtrack to avoid states where the proof
  state is unavailable (typically a closed proof).
- The commands "Suspend" and "Resume" have been removed.
- A basic Show Script has been reintroduced (no indentation).
- New command "Set Parsing Explicit" for deactivating parsing (and printing)
  of implicit arguments (useful for teaching).
- New command "Grab Existential Variables" to transform the unresolved evars
  at the end of a proof into goals.
- It is now mandatory to have a space (or tabulation or newline or end-of-file)
  after a "." ending a sentence.
- In SearchAbout, the [ ] delimiters are now optional.
- New command "Add/Remove Search Blacklist <substring> ...":
  a Search or SearchAbout or similar query will never mention lemmas
  whose qualified names contain any of the declared substrings.
  The default blacklisted substrings are "_admitted" "_subproof" "Private_".
- When the output file of "Print Universes" ends in ".dot" or ".gv",
  the universe graph is printed in the DOT language, and can be
  processed by Graphviz tools.
- New command "Print Sorted Universes".
- The undocumented and obsolete option "Set/Unset Boxed Definitions" has
  been removed, as well as syntaxes like "Boxed Fixpoint foo".
- A new option "Set Default Timeout n / Unset Default Timeout".
- Qed now uses information from the reduction tactics used in proof script
  to avoid conversion at Qed time to go into a very long computation.
- New command "Show Goal ident" to display the statement of a goal, even
  a closed one (available from Proof General).
- Command "Proof" accept a new modifier "using" to force generalization
  over a given list of section variables at section ending.
- New command "Arguments" generalizing "Implicit Arguments" and
  "Arguments Scope" and that also allows to rename the parameters of a
  definition and to tune the behavior of the tactic "simpl".
Specification language and Notations
- Most compatibility notations of the standard library are now tagged as
  (compat xyz), where xyz is a former Coq version, for instance "8.3".
  These notations behave as (only parsing) notations, except that they may
  triggers warnings (or errors) when used while Coq is not in a corresponding
  -compat mode.
- To activate these compatibility warnings, use "Set Verbose Compat Notations"
  or the command-line flag -verbose-compat-notations.
- For a strict mode without these compatibility notations, use
  "Unset Compat Notations" or the command-line flag -no-compat-notations.
- Maximal implicit arguments can now be set locally by { }. The registration
  traverses fixpoints and lambdas. Because there is conversion in types,
  maximal implicit arguments are not taken into account in partial
  applications (use eta expanded form with explicit { } instead).
- Added support for recursive notations with binders (allows for instance
  to write "exists x y z, P").
- Structure/Record printing can be disable by "Unset Printing Records".
  In addition, it can be controlled on type by type basis using
  "Add Printing Record" or "Add Printing Constructor".
- Pattern-matching compilation algorithm: in "match x, y with ... end",
  possible dependencies of x (or of the indices of its type) in the type
  of y are now taken into account.
Tactics
- An annotation "eqn:H" or "eqn:?" can be added to a "destruct"
  or "induction" to make it generate equations in the spirit of "case_eq".
  The former syntax "_eqn" is discontinued.
- The name of the hypothesis introduced by tactic "remember" can be
  set via the new syntax "remember t as x eqn:H" (wish #2489).
- Still no general "info" tactical, but new specific tactics info_auto,
  info_eauto, info_trivial which provides information on the proofs found
  by auto/eauto/trivial. Display of these details could also be activated by
  "Set Info Auto"/"Set Info Eauto"/"Set Info Trivial".
- Details on everything tried by auto/eauto/trivial during a proof search
  could be obtained by "debug auto", "debug eauto", "debug trivial" or by a
  global "Set Debug Auto"/"Set Debug Eauto"/"Set Debug Trivial".
- New command "r string" in Ltac debugger that interprets "idtac
  string" in Ltac code as a breakpoint and jumps to its next use.
- Tactics from the Dp plugin (simplify, ergo, yices, cvc3, z3, cvcl,
  harvey, zenon, gwhy) have been removed, since Why2 has not been
  maintained for the last few years. The Why3 plugin should be a suitable
  replacement in most cases.
- New proof engine.
- Scripts can now be structured thanks to bullets - * + and to subgoal
  delimitation via { }. Note: for use with Proof General, a cvs version of
  Proof General no older than mid-July 2011 is currently required.
- Support for tactical "info" is suspended.
- Support for command "Show Script" is suspended.
- New tactics constr_eq, is_evar and has_evar for use in Ltac.
- Removed the two-argument variant of "decide equality".
- New experimental tactical "timeout <n> <tac>". Since <n> is a time
  in second for the moment, this feature should rather be avoided
  in scripts meant to be machine-independent.
- Fix in "destruct": removal of unexpected local definitions in context might
  result in some rare incompatibilities (solvable by adapting name hypotheses).
- Introduction pattern "_" made more robust.
- Tactic (and Eval command) vm_compute can now be interrupted via Ctrl-C.
- Unification in "apply" supports unification of patterns of the form
  ?f x y = g(x,y) (compatibility ensured by using
  "Unset Tactic Pattern Unification"). It also supports (full) betaiota.
- Tactic autorewrite does no longer instantiate pre-existing
  existential variables (theoretical source of possible incompatibilities).
- Tactic "dependent rewrite" now supports equality in "sig".
- Tactic omega now understands Zpred (wish #1912) and can prove any goal
  from a context containing an arithmetical contradiction (wish #2236).
- Using "auto with nocore" disables the use of the "core" database (wish #2188).
  This pseudo-database "nocore" can also be used with trivial and eauto.
- Tactics "set", "destruct" and "induction" accepts incomplete terms and
  use the goal to complete the pattern assuming it is non ambiguous.
- When used on arguments with a dependent type, tactics such as
  "destruct", "induction", "case", "elim", etc. now try to abstract
  automatically the dependencies over the arguments of the types
  (based on initial ideas from Chung-Kil Hur, extension to nested
  dependencies suggested by Dan Grayson)
- Tactic "injection" now failing on an equality showing no constructors while
  it was formerly generalizing again the goal over the given equality.
- In Ltac, the "context [...]" syntax has now a variant "appcontext [...]"
  allowing to match partial applications in larger applications.
- When applying destruct or inversion on a fixpoint hiding an inductive
  type, recursive calls to the fixpoint now remain folded by default (rare
  source of incompatibility generally solvable by adding a call to simpl).
- In an ltac pattern containing a "match", a final "| _ => _" branch could be
  used now instead of enumerating all remaining constructors. Moreover, the
  pattern "match _ with _ => _ end" now allows to match any "match". A "in"
  annotation can also be added to restrict to a precise inductive type.
- The behavior of "simpl" can be tuned using the "Arguments" vernacular.
  In particular constants can be marked so that they are always/never unfolded
  by "simpl", or unfolded only when a set of arguments evaluates to a
  constructor. Last one can mark a constant so that it is unfolded only if the
  simplified term does not expose a match in head position.
Libraries
- Reals: changed definition of PI, no more axiom about sin(PI/2).
- SetoidPermutation: a notion of permutation for lists modulo a setoid equality.
- BigN: fixed the ocaml code doing the parsing/printing of big numbers.
- MSetRBT: a new implementation of MSets via Red-Black trees (initial
  contribution by Andrew Appel).
- MSetAVL: for maximal sharing with the new MSetRBT, the argument order
  of Node has changed (this should be transparent to regular MSets users).
- Extension of the abstract part of Numbers, which now provide axiomatizations
  and results about many more integer functions, such as pow, gcd, lcm, sqrt,
  log2 and bitwise functions. These functions are implemented for nat, N, BigN,
  Z, BigZ. See in particular file NPeano for new functions about nat.
- The definition of types positive, N, Z is now in file BinNums.v
- Major reorganization of ZArith. The initial file ZArith/BinInt.v now contains
  an internal module Z implementing the Numbers interface for integers.
  This module Z regroups:
  * all functions over type Z : Z.add, Z.mul, ...
  * the minimal proofs of specifications for these functions : Z.add_0_l, ...
  * an instantation of all derived properties proved generically in Numbers :
    Z.add_comm, Z.add_assoc, ...
  A large part of ZArith is now simply compatibility notations, for instance
  Zplus_comm is an alias for Z.add_comm. The direct use of module Z is now
  recommended instead of relying on these compatibility notations.
- Similar major reorganization of NArith, via a module N in NArith/BinNat.v
- Concerning the positive datatype, BinPos.v is now in a specific directory
  PArith, and contains an internal submodule Pos. We regroup there functions
  such as Pos.add Pos.mul etc as well as many results about them. These results
  are here proved directly (no Number interface for strictly positive numbers).
- Note that in spite of the compatibility layers, all these reorganizations
  may induce some marginal incompatibilies in scripts. In particular:
  * the "?=" notation for positive now refers to a binary function Pos.compare,
    instead of the infamous ternary Pcompare (now Pos.compare_cont).
  * some hypothesis names generated by the system may changed (typically for
    a "destruct Z_le_gt_dec") since naming is done after the short name of
    the head predicate (here now "le" in module Z instead of "Zle", etc).
  * the internals of Z.add has changed, now relying of Z.pos_sub.
- Also note these new notations:
  * "<?" "<=?" "=?" for boolean tests such as Z.ltb Z.leb Z.eqb.
  * "歎" for the alternative integer division Z.quot implementing the Truncate
    convention (former ZOdiv), while the notation for the Coq usual division
    Z.div implementing the Flooring convention remains "/". Their corresponding
    modulo functions are Z.rem (no notations) for Z.quot and Z.modulo (infix
    "mod" notation) for Z.div.
- Lemmas about conversions between these datatypes are also organized
  in modules, see for instance modules Z2Nat, N2Z, etc.
- When creating BigN, the macro-generated part NMake_gen is much smaller.
  The generic part NMake has been reworked and improved. Some changes
  may introduce incompatibilities. In particular, the order of the arguments
  for BigN.shiftl and BigN.shiftr is now reversed: the number to shift now
  comes first. By default, the power function now takes two BigN.
- Creation of Vector, an independent library for lists indexed by their length.
  Vectors' names overwrite lists' one so you should not "Import" the library.
  All old names changed: function names follow the ocaml ones and, for example,
  Vcons becomes Vector.cons. You can get [..;..;..]-style notations by importing
  Vector.VectorNotations.
- Removal of TheoryList. Requiring List instead should work most of the time.
- New syntax "rew Heq in H" and "rew <- Heq in H" for eq_rect and
  eq_rect_r (available by importing module EqNotations).
- Wf.iter_nat is now Peano.nat_iter (with an implicit type argument).
Module System
- The names of modules (and module types) are now in a fully separated
  namespace from ordinary definitions: "Definition E:=0. Module E. End E."
  is now accepted.
- During subtyping checks, an opaque constant in a module type could now
  be implemented by anything of the right type, even if bodies differ.
  Said otherwise, with respect to subtyping, an opaque constant behaves
  just as a parameter. Coqchk was already implementing this, but not coqtop.
- The inlining done during application of functors can now be controlled
  more precisely, by the annotations (no inline) or (inline at level XX).
  With the latter annotation, only functor parameters whose levels
  are lower or equal than XX will be inlined.
  The level of a parameter can be fixed by "Parameter Inline(30) foo".
  When levels aren't given, the default value is 100. One can also use
  the flag "Set Inline Level ..." to set a level.
- Print Assumptions should now handle correctly opaque modules (#2168).
- Print Module (Type) now tries to print more details, such as types and
  bodies of the module elements. Note that Print Module Type could be
  used on a module to display only its interface. The option
  "Set Short Module Printing" could be used to switch back to the earlier
  behavior were only field names were displayed.
CoqIDE
- Coqide now supports the "Restart" command, and "Undo" (with a warning).
  Better support for "Abort".
- Coqide now runs coqtop as separated process, making it more robust:
  coqtop subprocess can be interrupted, or even killed and relaunched
  (cf button "Restart Coq", ex-"Go to Start"). For allowing such
  interrupts, the Windows version of coqide now requires Windows >= XP
  SP1.
- The communication between CoqIDE and Coqtop is now done via a dialect of XML.
- The backtrack engine of CoqIDE has been reworked, it now uses the
  "Backtrack" command similarly to Proof General.
- The Coqide parsing of sentences has be reworked and now supports
  tactic delimitation via { }.
- Coqide now accepts the Abort command (wish #2357).
- Coqide can read coq_makefile files as "project file" and use it to
  set automatically options to send to coqtop.
- Preference files have moved to $XDG_CONFIG_HOME/coq and accelerators
  are not stored as a list anymore.
Internal infrastructure
- Opaque proofs are now loaded lazily by default. This allows to be almost as
  fast as -dont-load-proofs, while being safer (no creation of axioms) and
  avoiding feature restrictions (Print and Print Assumptions work ok).
- Revised hash-consing code allowing more sharing of memory
- Experimental support added for camlp4 (the one provided alongside ocaml),
  simply pass option -usecamlp4 to ./configure. By default camlp5 is used.
- Revised build system: no more stages in Makefile thanks to some recursive
  aspect of recent gnu make, use of vo.itarget files containing .v to compile
  for both make and ocamlbuild, etc.
- Support of cross-compilation via mingw from unix toward Windows,
  contact P. Letouzey for more informations.
- New Makefile rules mli-doc to make html of mli in dev/doc/html and
  full-stdlib to get a (huge) pdf reflecting the whole standard library.
Extraction
- By default, opaque terms are now truly considered opaque by extraction:
  instead of accessing their body, they are now considered as axioms.
  The previous behaviour can be reactivated via the option
  "Set Extraction AccessOpaque".
- The pretty-printer for Haskell now produces layout-independant code
- A new command "Separate Extraction cst1 cst2 ..." that mixes a
  minimal extracted environment a la "Recursive Extraction" and the
  production of several files (one per coq source) a la "Extraction Library".
- New option "Set/Unset Extraction KeepSingleton" for preventing the
  extraction to optimize singleton container types.
- The extraction now identifies and properly rejects a particular case of
  universe polymorphism it cannot handle yet (the pair (I,I) being Prop).
- Support of anonymous fields in record (#2555).
Tools
- Coq now searches directories specified in COQPATH, $XDG_DATA_HOME/coq,
  $XDG_DATA_DIRS/coq, and user-contribs before the standard library.
- Coq rc file has moved to $XDG_CONFIG_HOME/coq.
- Major changes to coq_makefile:
  * mli/mlpack/mllib taken into account, ml not preproccessed anymore, ml4 work;
  * mlihtml generates doc of mli, install-doc install the html doc in DOCDIR
    with the same policy as vo in COQLIB;
  * More variables are given by coqtop -config, others are defined only if the
    users doesn't have defined them elsewhere. Consequently, generated makefile
    should work directly on any architecture;
  * Packagers can take advantage of $(DSTROOT) introduction. Installation can
    be made in $XDG_DATA_HOME/coq;
  * -arg option allows to send option as argument to coqc.

(jaapb)

2012-10-29 09:46:46 UTC MAIN commitmail json YAML

2012-10-29 09:11:23 UTC MAIN commitmail json YAML

Corrected contents of patch directory; minor modifications to build
mechanism to keep pkglint happy.

(jaapb)

2012-10-29 08:50:29 UTC MAIN commitmail json YAML

2012-10-29 08:06:03 UTC MAIN commitmail json YAML

Updated lang/squeak to 4.3

(asau)

2012-10-29 08:04:21 UTC MAIN commitmail json YAML

Update to Squeak 4.3

Changes in Squeak 4.3.

There aren't any applications bundled with this release.
Instead of working on applications to bundle with the image,
core developers have been inspired by the Cog virtual machine
to look deeply into the image for things they wanted to change.
As a result, the image is becoming smaller, tidier, and nimbler.

There are five Welcome Workspaces in Squeak 4.3.
The second is called Future Directions:

- This image is ~15M. If you execute - Smalltalk unloadAllKnownPackages -
  it will become ~10M

- A SqueakCore image is available at http://ftp.squeak.org/4.3

- A reasonable target is the creation of a smaller image,
  which may be a task before the community

- A place to explore where to make reductions is likely the
removal/replacement of GUIs

- Once we have a smaller core image, we can employ Andreas Raab's memo [1]
  on how to load code back into the image. This will be based on tests
  delineating the separate responsibilities of core and application developers

[1] http://lists.squeakfoundation.org/pipermail/squeak-dev/2010-May/150658.html

Changes in Squeak 4.2

* Preparation for adoption of Cog VM
* Significant class-library and IDE improvements, with many speed improvements
* High-precision Clock (microsecond precision)
* Cleaned-up code base, with better support for unloading optional packages and fonts.
* The last of the underscore assignments have been replaced with ANSI assignments.
* Refactoring and unification of Smalltalk and SmalltalkImage globals.
* API for stdio access (requires recent VM)
* Improved command-line interface
* Better Documentation (see Help > Help Browser)
* SUnit now supports timeouts
* More UI work including a tweaked look and feel, and support for translucent fonts
* Support for classic MVC has been restored to Squeak for better support of slower devices
* System Reporter (found under Help > About this system) - a tool
  to simplify and standardise the reporting of your image's
  set-up.

Changes in Squeak 4.1

This version combines the licence change occurring in the 4.0 release
with the development work that has been going on while the re-licensing
process took place.

Much of the work in this release has been focused on fundamental
improvements. Major achievements are the integration of Cog's
closure implementation, the improved UI look and feel,
the new anti-aliased fonts, the core library improvements,
and the modularity advances.

One key focus for this release was to address the issues that
have been known to frustrate developers using Squeak for the
first time. A much improved set of UI widgets, the new menu bar
including the fast search control, integrated help, improved
test coverage, more class and method comments, and integrated
syntax highlighting all make the system more accessible. The new
full closures, the new traits implementation, multiple
improvements to the collections and streams classes, the new
NumberParser hierarchy all help make development easier and
produce cleaner, faster code. Deploying your completed
applications will be made easier by the work done on making many
modules unloadable, and by support for other cleanup activities.

(asau)

2012-10-29 07:37:11 UTC MAIN commitmail json YAML

Updated lang/squeak-vm to 4.10.2.2614

(asau)

2012-10-29 07:33:41 UTC MAIN commitmail json YAML

2012-10-29 05:07:25 UTC MAIN commitmail json YAML

2012-10-29 01:24:51 UTC MAIN commitmail json YAML

Updated geography/viking to 1.3.2.1nb5

(gdt)

2012-10-29 01:24:05 UTC MAIN commitmail json YAML

Viking 1.3.2.1 (2012-09-28)
Bug Fix Release (of a bug fix release):
* Fix CPU usage going to 100% when statusbar items update is called.

Viking 1.3.2 (2012-09-23)
Bug Fix Release including:

* Removed Route Finder Tool as Google Direction service interface has
  disalbed the method Viking interfaced with it.
* Fix for Debian#685817: Statusbar Update From Thread Instability
* Fix SF#3564795: Crashing when attempting to create waypoints from EXIF
  images without enough GPS information.
* Fix drawing of next potential trackpoint on Windows Systems.
* Fix GPSBabel Dynamic Device List generation on Windows Systems.
* Fix crashing when displayed map copyright(s) is longer than the internal
  buffer.
* Fix crashing when deleting a GPS layer which has started a realtime tracking.
* Fix printing of DEBUG message since glib 2.32

Viking 1.3.1 (2012-06-26)
Bug Fix for Windows Systems Release:
* Fix crash in Show Picture functionality on Window's Systems.

(gdt)

2012-10-28 23:40:25 UTC MAIN commitmail json YAML

As promised a week ago, remove arts and aalib from default suggested
options.
arts is obsolete and aalib only ever was a nice hack, not something
to be enabled by default.

(wiz)

2012-10-28 20:32:31 UTC MAIN commitmail json YAML

xlockmore 5.41

(is)

2012-10-28 20:21:12 UTC MAIN commitmail json YAML

2012-10-28 11:18:02 UTC MAIN commitmail json YAML

2012-10-28 11:17:34 UTC MAIN commitmail json YAML

Update to 2.6.  Notable changes:

Enhancements:
- support for include directive
- added support for HTTPS backends
- support for SNI via multiple Cert directives (thanks to Joe Gooch)

Bug fixes:
- fixed problem with long input lines in http.c
- keep sessions for disabled back-ends, continue using them until the time-out
- fixed memory leak in session removal
- fix for possible request smuggling by using multiple headers
- changed long to long long for support of requests larger than 2GB

(shattered)

2012-10-28 08:23:34 UTC MAIN commitmail json YAML

Updated devel/gnome-common to 3.6.0

(wiz)

2012-10-28 08:23:16 UTC MAIN commitmail json YAML

Update to 3.6.0. Three years of changes.
>From Olaf 'Rhialto' Seibert on pkgsrc-wip-discuss.

(wiz)

2012-10-28 06:31:10 UTC MAIN commitmail json YAML

2012-10-28 03:35:10 UTC MAIN commitmail json YAML

2012-10-28 03:33:45 UTC MAIN commitmail json YAML

Update to 0.4.4

Release 0.4.4 (TL'12) [April 2012]
* Fix crash caused by Qt when adding lines at the beginning of a document
* Fix search/replace for multi-line strings
* Work around layout issues which cause lines to disappear
* Fix building with BSD make
* Fix block selection of last paragraph
* Fix overwrite of "Find all occurrences" option

* Improve "Unable to execute..." error dialog
* Rename "Show/Hide Output Panel" to "Show/Hide Console Output" in the menu
  and the preferences dialog
* Remove subject and add instructions to body of the "email to mailinglist"
* Bring the window running TeX to the top at the beginning of typesetting to
  ensure that the console output is visible
* Allow symlinks and display only folders in "path for programs" in the
  preferences dialog
* Add "Clear Recent Files" to "Open Recent" menu
* Add an autocompletion entry to the preferences dialog
* Add Lua(La)TeX to the default tools (and drop LaTeXmk by default)
* Add an option to open log files
* Add CMake support (experimental)
* Update SyncTeX to version 1.17
* Update URLs to http://www.tug.org/texworks/

* Some enhancements to functions available to scripting
* Avoid showing an empty message box for script results
* Resolve symlinks when looking for scripts
* Expose the scripts' titles, authors, filenames, etc. to scripting
* Update/improve scripts: open pdf in default viewer, derive spellchecking
  language from babel package, log parser

(markd)

2012-10-28 02:07:25 UTC MAIN commitmail json YAML

Update for p5-Sendmail-PMilter

(markd)

2012-10-28 02:06:12 UTC MAIN commitmail json YAML

Update to 1.00

1.00  Sat Apr 16 13:10:16 UTC 2011
    - Avoid infinite loop: signal handler modifies errno
    - Added support for SMFIC_UNKNOWN

0.99  Sun Feb  6 21:32:30 UTC 2011
    - RT#65499: Handle IPv6 addresses in SMFIC_CONNECT in
      Sendmail::PMilter::Context

0.98  Fri Mar 12 21:36:18 GMT 2010
    - RT#51759: added child_init and child_exit parameters to prefork
      dispatcher -Michael Schout
    - RT#51713: fixed POD errors for embedded '>' -Michael Schout
    - Note in the POD that the module is orphaned and is looking for a
      proper maintainer.

0.97  Mon Feb 23 23:39:15 2009 UTC
    - RT#43327: Changed protocol testing condition from ($ver == 2) to ($ver >= 2 && $ver <= 6)
      to make the milter work with Sendmail 8.14
    - Removed CVS Id from Changes file

0.96  Sat Jul 07 18:27:25 2007 UTC
    - Changed threads::shared::share(\$nchildren) to
      threads::shared::share($nchildren), this should fix some failing smokes

(markd)

2012-10-28 02:02:26 UTC MAIN commitmail json YAML

Updated keepassx

(markd)

2012-10-28 02:00:51 UTC MAIN commitmail json YAML

2012-10-28 01:17:09 UTC MAIN commitmail json YAML

2012-10-27 22:19:17 UTC MAIN commitmail json YAML

Added security/KeePass version 2.20.1

(wiz)

2012-10-27 22:19:01 UTC MAIN commitmail json YAML

2012-10-27 22:18:50 UTC MAIN commitmail json YAML

Import KeePass-2.20.1 as security/KeePass.

Today you need to remember many passwords. You need a password for
the Windows network logon, your e-mail account, your website's FTP
password, online passwords (like website member account), etc. etc.
etc. The list is endless. Also, you should use different passwords
for each account. Because if you use only one password everywhere
and someone gets this password you have a problem... A serious
problem. The thief would have access to your e-mail account, website,
etc. Unimaginable.

KeePass is a free open source password manager, which helps you to
manage your passwords in a secure way. You can put all your passwords
in one database, which is locked with one master key or a key file.
So you only have to remember one single master password or select
the key file to unlock the whole database. The databases are
encrypted using the best and most secure encryption algorithms
currently known (AES and Twofish).

(wiz)

2012-10-27 21:43:28 UTC MAIN commitmail json YAML

update to new style rcorder.

(zafer)

2012-10-27 21:42:36 UTC MAIN commitmail json YAML

2012-10-27 20:26:17 UTC MAIN commitmail json YAML

kind of hard to use http repositories without the http helper.

(christos)

2012-10-27 19:43:50 UTC MAIN commitmail json YAML

Added finance/moneyguru version 2.6.1

(wiz)

2012-10-27 19:43:34 UTC MAIN commitmail json YAML

2012-10-27 19:43:23 UTC MAIN commitmail json YAML

Add fairware-license for moneyguru.

(wiz)

2012-10-27 19:43:18 UTC MAIN commitmail json YAML

Import moneyguru-2.6.1 as finance/moneyguru.

moneyGuru is a personal finance management application. With it,
you can evaluate your financial situation so you can make informed
(and thus better) decisions. Most finance applications have the
same goal, but moneyGuru's difference is in the way it achieves
it. Rather than having reports which you have to configure (or find
out which pre-configured report is the right one), your important
financial data (net worth, profit) is constantly up-to-date and
"in your face". This allows you to constantly make informed decision
rather than doing so periodically.

(wiz)

2012-10-27 17:51:46 UTC MAIN commitmail json YAML

+ Updated x11/modular-xorg-server to 1.6.5nb13 [wiz 2012-10-27]

(wiz)

2012-10-27 17:43:32 UTC MAIN commitmail json YAML

Do not set vendor, since some code checks for vendor-specific workarounds
and we do not want to have to add cases for pkgsrc.
Bump PKGREVISION.

(wiz)

2012-10-27 17:39:12 UTC MAIN commitmail json YAML

2012-10-27 16:39:09 UTC MAIN commitmail json YAML

Updated devel/xulrunner to 16.0.2
Updated www/firefox to 16.0.2

(ryoon)

2012-10-27 16:38:01 UTC MAIN commitmail json YAML

Update to 16.0.2

www/firefox is also updated to 16.0.2.

Changelog:
FIXED
16.0.2: Security fixes can be found here

Fixed in Firefox 16.0.2
MFSA 2012-90 Fixes for Location object issues

(ryoon)

2012-10-27 13:01:35 UTC MAIN commitmail json YAML

Let users install packages from OctaveForge:
provide path to GNU make which is assumed there.

(asau)