(sysutils/R-ff) import R-ff-4.0.7

The ff package provides data structures that are stored on disk but
behave (almost) as if they were in RAM by transparently mapping only a
section (pagesize) in main memory - the effective virtual memory
consumption per ff object.

ff supports R's standard atomic data types 'double', 'logical', 'raw'
and 'integer' and non-standard atomic types boolean (1 bit),
quad (2 bit unsigned), nibble (4 bit unsigned), byte (1 byte signed
with NAs), ubyte (1 byte unsigned), short (2 byte signed with NAs),
ushort (2 byte unsigned), single (4 byte float with NAs).

For example 'quad' allows efficient storage of genomic data as
an 'A','T','G','C' factor. The unsigned types support 'circular'
arithmetic.

(mef)

sysutils/R-biglm: import R-biglm-0.9.2.1

Regression for data too large to fit in memory.

(mef)

doc: Updated devel/R-Rcpp to 1.0.9

(mef)

(devel/R-Rcpp) Updated 1.0.8.3 to 1.0.9

2022-07-02  Dirk Eddelbuettel  <edd@debian.org>

        * DESCRIPTION (Date, Version): Release 1.0.9

        * inst/include/Rcpp/config.h: Idem
        * inst/NEWS.Rd: Idem
        * vignettes/rmd/Rcpp.bib: Idem
        * inst/bib/Rcpp.bib: Idem
* vignettes/pdf/*: Rebuilt

2022-07-01  Dirk Eddelbuettel  <edd@debian.org>

* man/dependsAttribute.Rd: Use https in URL
* man/exportAttribute.Rd: Idem
* man/interfacesAttribute.Rd: Idem
* DESCRIPTION (URL): Idem
* README.md: Idem, use Amazon page for Rcpp book

2022-05-26  Dirk Eddelbuettel  <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

2022-05-25  Dirk Eddelbuettel  <edd@debian.org>

* inst/tinytest/test_string.R: Add C++11 conditioning for new unit tests

2022-05-23  Dean Scarff  <dos@scarff.id.au>

* inst/include/Rcpp/String.h: Make less copies of strings via move
semantics and preserving the buffer/SEXP representation when copying
* inst/include/RcppCommon.h: include <utility> for std::move
* inst/tinytest/cpp/String.cpp: Add unit tests
* inst/tinytest/test_string.R: Add unit tests

2022-05-12  Dirk Eddelbuettel  <edd@debian.org>

* docker/ci/Dockerfile: Added xml2, also use more r-cran-* binaries

2022-05-12  Marco Colombo <mar.colombo13@gmail.com>

* vignettes/rmd/Rcpp-FAQ.Rmd: Fixed typo

2022-04-03  Dirk Eddelbuettel  <edd@debian.org>

* vignettes/rmd/Rcpp-FAQ.Rmd: Add paragraph about Date(time) not
being aimed at parsing large quantities at once
* vignettes/pdf/Rcpp-FAQ.pdf: Idem

* vignettes/rmd/Rcpp.bib: Add four entries
        * inst/bib/Rcpp.bib: Idem

2022-03-14  Dirk Eddelbuettel  <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

(mef)

doc: Updated devel/R-R.utils to 2.12.2

(mef)

(devel/R-R.utils) Updated 2.11.0 to 2.12.2

# Version 2.12.2 [2022-11-11]

## Documentation

* Drop duplicated arguments from `help("parse.SmartComments")`.

## Deprecated and Defunct

* S3 method `warnings()` for `Verbose`, and the corresponding generic
  function, has been deprecated in favor of the `printWarnings()`.

# Version 2.12.1 [2022-10-30]

## Documentation

* Documented the limitation that `withTimeout()` may fail to detect
  the timeout error if the language is temporarily switched during
  evaluation.

* Updated moved and broken URLs in help pages.

## Bug Fixes()

* `filePath()` could produce `Error in if (components[pos] == ".." &&
  components[pos - 1L] != "..") { : missing value where TRUE/FALSE
  needed` when there were too many `..` components in the specified
  path, e.g. `filePath("C:/foo/../bar/../..")`.  Now it returns the
  maximum pruned path, e.g. `"C:/.."`.

* `withTimeout()` did not return NULL on timeouts when `onTimeout`
  was `"warning"` or `"silent"`.

* `parseRepos()` would produce `"Error in get(".read_repositories",
  envir = ns) : object '.read_repositories' not found"` in
  R-devel (>= rev 83148).

# Version 2.12.0 [2022-06-27]

## New Features

* Added support for lists and data frames to `tempvar()`.

## Deprecated and Defunct

* Remove defunct `Asserts$inherits()` and S3 generic
  `inherits()`. Use `Asserts$inheritsFrom()` instead.

* Remove defunct argument `substitute` from `withCapture()`. Use
  argument `replace` instead.

(mef)

doc: Updated devel/R-R.oo to 1.25.0

(mef)

(devel/R-R.oo) Updated 1.24.0 to 1.25.0

# Version 1.25.0 [2022-06-11]

## New Features

* Now `showNews()` for `Package` recognizes 'NEWS.md' files too.

## Bug Fixes

* Rdoc no longer injects a dummy `\emph{}` at the end of `@howtocite`
  sections, because it now triggers an `R CMD check --as-cran` NOTE.
  The workaround was used to workaround an `R CMD check` false
  positive way back in 2004, which has since been fixed.

(mef)

doc: Updated devel/R-R.methodsS3 to 1.8.2

(mef)

(devel/R-R.methods3) Updated 1.8.1 to 1.8.2

# Version 1.8.2 [2022-06-13]

## Deprecated & Defunct

* Very old, deprecated argument `enforceRCC` for `setGenericS3()` and
  `setMethodS3()` is now defunct in favor of argument `validators`.

(mef)

updated editors/nano to 7.1

Quoting from the ChangeLog:
Changes between v7.0 and v7.1:
------------------------------

Benno Schulenberg (8):
      build: fix compilation when configured with --disable-comment
      bump version numbers and add a news item for the 7.1 release
      copyright: update the last year for significantly changed files
      docs: say thanks to the Albanian translator
      rcfile: report an error when an included file does not exist
      text: upon Enter, eat only lefthand blanks, not any other characters
      tweaks: avoid passing NULL to access()
      tweaks: wrap overlong lines in the Tcl syntax, to make them manageable

Changes between v6.4 and v7.0:
------------------------------

Benno Schulenberg (94):
      build: add options --disable-formatter and --disable-linter to configure
      build: exclude some pieces that are not needed with --disable-nanorc
      build: exclude two unneeded functions correctly from the tiny version
      build: fix compilation when configured with --enable-tiny
      bump version numbers and add a news item for the 7.0 release
      completion: search through all open buffers for possible completions
      docs: clarify the distinction between binding a function and "{function}"
      docs: describe --disable-formatter and --disable-linter configure options
      docs: explain how to include a double quote plus space in a nanorc regex
      docs: improve the legibility of an itemized list
      docs: mention in the man page how M-V can insert any Unicode code point
      docs: mention that string binds may contain function names between braces
      docs: replace control codes in the examples with {command} cartouches
      docs: suggest a key binding for snipping trailing blanks
      execute: show "Cancelled" instead of "Error" when the user hits ^C
      extra: use the whole terminal for the crawl, and quicken it a bit
      feedback: suppress undo/redo messages when option --zero is in effect
      files: before sending data to an external command, decode LF back to NUL
      files: improve the error handling when executing an external command
      filtering: terminate also the sender process when the user hits ^C
      filtering: when returning to a line number, ensure it is within range
      gnulib: update to its current upstream state
      goto: don't center the current line when the user specified a column only
      help: don't show the New-Buffer toggle when in view mode
      help: move the M-Del item up, so that M-PgUp and M-PgDn are paired
      help: prioritize the unshifted Meta keystrokes for buffer switching
      input: allocate a small keystroke buffer, and never free it
      input: allocate two small character buffers too, and never free them
      input: give up when the capacity of the keystroke buffer overflows
      input: interpret commands of the form {functionname} inside string binds
      memory: avoid a leak when a string bind specifies an unknown menu
      prompt: allow rebinding also ^N, ^Q, and ^Y at the yes-no prompt
      prompt: ingest queued characters before handling any subsequent function
      prompt: prevent execution of inadmissible functions in view mode
      prompt: return FALSE for non-editing functions also in the tiny version
      prompt: toggle the help lines only for the 'nohelp' toggle
      search: skip a match on the magic line, as it is a just convenience line
      startup: ensure that +/string centers the match also with --linenumbers
      startup: for +/string, center the found occurrence when possible
      startup: quit when standard input is not a TTY (after handling arguments)
      startup: report an empty search string also when there is a modifier
      syntax: nanorc: colorize valid function names plus surrounding braces
      tweaks: add parentheses for consistency, and reshuffle for conciseness
      tweaks: allow the linter to be used in view mode, as it makes no changes
      tweaks: attribute some of the features that were added in the last years
      tweaks: avoid iterating over the same string twice in a row
      tweaks: avoid sometimes calling a function three times in a row
      tweaks: check the multiline regexes only for Delete and Backspace
      tweaks: condense a comment, add two small ones, and reshuffle a line
      tweaks: delete a flag that is no longer used
      tweaks: determine in another way whether a shortcut is okay in view mode
      tweaks: discard a bracketed paste in the browser more efficiently
      tweaks: don't use a pointer when the value itself is all that is needed
      tweaks: drop an unneeded check for permissibility of prompt shortcuts
      tweaks: drop a parameter that is no longer used
      tweaks: drop shunting of flags by calling the needed function directly
      tweaks: elide a function that does not need to be a separate function
      tweaks: elide an assignment by iterating with the target variable
      tweaks: elide an intermediary variable that is no longer needed
      tweaks: elide an unused parameter
      tweaks: elide an unused return value
      tweaks: elide a parameter by moving the general case one level up
      tweaks: elide a variable, rename another, and reshuffle an assignment
      tweaks: fold two cases together, because they basically do the same
      tweaks: group the special keycodes for implanted strings together
      tweaks: improve two comments, and exclude two unneeded prototypes
      tweaks: make the crawl use the whole screen also in the tiny version
      tweaks: make two error messages more succinct and easier to translate
      tweaks: move the arrays of menu names and symbols to where they are used
      tweaks: move the --magic option up, so that --zero comes last
      tweaks: move to a given line number more efficiently
      tweaks: move two checks plus corresponding calls to a better place
      tweaks: normalize the indentation after the previous change
      tweaks: reduce four variations of a message to a single common form
      tweaks: rename a macro for clarity, and normalize some indentation
      tweaks: rename a variable, away from an abbreviation
      tweaks: rename two record elements and three parameters, for clarity
      tweaks: replace sizeof(char) with 1, as that is assumed anyway
      tweaks: reshuffle a declaration, and correct the wording of a comment
      tweaks: reshuffle a line, to group things better
      tweaks: reshuffle some code and drop some comments, for conciseness
      tweaks: reshuffle some code, to not determine a shortcut twice
      tweaks: reshuffle some lines, to be more readable instead of compact
      tweaks: reshuffle two lines, for conciseness and in preparation
      tweaks: reword and/or condense four comments
      tweaks: rewrap line, improve wording, and correct typo in old news item
      tweaks: rewrap some lines, drop a redundant call, and reshuffle a line
      tweaks: simplify a function now that a Unicode code can be typed quicker
      tweaks: simplify a pasting routine, modelling it after the injection one
      tweaks: use an auxiliary variable to avoid dereferences of 'shortcut'
      undo: make sure the current line is defined before it is referenced
      verbatim: allow the user to finish Unicode input with <Enter> or <Space>
      verbatim: do not overwrite the status bar when the code is invalid
      verbatim: don't show dots during Unicode input, as they give wrong idea

(schwarz)

doc: Updated pkgtools/rc.d-boot to 20221202

(triaxx)

rc.d-boot: Fix for unprivileged users on Darwin

pkgsrc changes:
---------------
  * Replace hardcoded /etc with ${PKG_SYSCONFDIR} to find rc.d scripts installed
    by unprivileged users.
  * For unprivileged bootstrap, the INSTALL script copies
    org.pkgsrc.rc.d-boot.plist to $HOME directory of the user who installs the
    package. This avoids making assumptions on the unprivileged user during the
    build process.

(triaxx)

rust: Stop xz being buildlinked.

The recent xz update broke the API and rust happened to be using it via other
buildlink3 dependencies, even though we try to use the bundled version.  Set
BUILDLINK_FILES_CMD.xz to ${TRUE} to avoid any xz files from being linked, and
ensuring we use the bundled copy.

(jperkin)

unit: fix patch format (NFC)

(gutteridge)

doc: Updated ham/chirp to 20221217

(gdt)

ham/chirp: Update to 20221217

upstream changes are bugfixes

(gdt)

doc: Updated devel/R-devtools to 2.4.5

(mef)

(devel/R-devtools) Updated 2.4.3 to 2.4.5

# devtools 2.4.5

* `check(cleanup =)` was deprecated in devtools v1.11.0 (2016-04-12) and was
  made defunct in v2.4.4 (2022-07-20). The documentation is more clear now about
  recommended alternatives.

* `check(check_dir = NULL)` is the new default, to align with the default
  behaviour of the underlying `rcmdcheck::rcmdcheck()`.

* `check(cran = TRUE)` sets the env var
  `_R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_` to `FALSE`, in order to
  surface the `"Namespace in Imports field not imported from"` NOTE. This only
  applies to R >= 4.2, due to favorable changes in the behaviour of
  `R CMD check --as-cran` (#2459).

* `test_active_file()` passes the package onto to testthat so it can correctly
  set the `TESTTHAT_PKG` envvar (#2470).

* `test()` and `test_active_file()` once again work with testthat itself.

# devtools 2.4.4

* `install(reload = TRUE)` now calls `pkgload::unregister()` instead
  of `pkload::unload()` (#2349). This allows the package to keep
  functioning if it is still in use in the R session (e.g. through
  event handlers).

* `test()` no longer calls `load_all()` twice. `test_active_file()`
  now calls `load_all()` via testthat.

* `aspell_env_var()` does a better job of matching `R CMD check` behaviour,
  which is only to use `aspell`, not `hunspell` or `ispell` (#2376).

* Installing devtools now installs pkgdown, profvis, bench, miniUI,
  and urlchecker, ensuring that you have everything needed for package
  development (#2388).

* `dev_sitrep()` has been updated for the calendar-based version number scheme
  adopted by the RStudio IDE in September 2021 (#2397, #2410).

(mef)

doc: Updated devel/R-pkgload to 1.3.2

(mef)

(devel/R-pkgload) Updated 1.2.4 to 1.3.2

# pkgload 1.3.2

* Fixes for CRAN checks.

# pkgload 1.3.1

* `dev_topic_find()` is now exported (#215).

* `dev_help()` will remind you to run `pkgload::load_all()` if no
  in-development packages are found (#221).

* Shimmed `?` now works even if you've renamed the documentation topic (#220).

* `dev_help()` now works with an RStudio daily to deliver a rendered
  development documentation that includes working images and links (#228).

# pkgload 1.3.0

* `load_all()` now calls `rlang::check_installed()` to prompt whether
  to install missing packages.

  Outdated and missing dependencies are installed using pak if
  installed. If not, the remotes package is used if installed.
  Otherwise `install.packages()` is used as a last resort but this
  method does not support Remotes fields.

* `load_all()` gains an `attach` argument set to `TRUE` by default (#209).
  If set to `FALSE`, `load_all()` creates a new namespace but doesn't
  create a package environment on the search path. In this case, it is
  more similar to `loadNamespace()` than to `library()`.

* Improved the way help pages are displayed in RStudio. This makes the
  behaviour within and outside RStudio consistent and fixes issues
  with Rd macros (#120).

* `unregister()` is now exported. This is a gentler version of
  `unload()` which removes the package from the search path,
  unregisters methods, and unregisters the namespace. However it
  doesn't try to unload the namespace or its DLL so that dangling
  references keep working.

* User `onLoad` hooks are now run after exports have been
  populated. This allows the hook to use exported functions.

* The loaded namespace is now locked just before user `onLoad` hooks
  are run. This better reproduced the namespace sealing behaviour of
  regular loading.

  The package environment environment is now locked as well before
  both the user and package `onAttach` hooks are run.

* Added support for loading a .so or .dll file from the `inst`
  folder via a new `library.dynam()` shim (@ethanplunkett, #48).

* The `system.file()` shim now fails if you supply a path that starts
  with `inst` to better reproduce the behaviour with installed
  packages (#104).

* `load_all()` now imports its dependencies lazily to avoid parallel
  installation issues (#89).

* Unknown Rd macros no longer trigger a warning when building the
  package topic index (#119).

* `load_all(compile = TRUE)` now forces a full recompilation (#93).

* The advice about running `rm()` to remove conflicts with objects in
  the global environment is now clickable in RStudio (#199).

* New `is_loading()` predicate to detect whether `load_all()` is
  currently running (#134).

* `.dynLibs()` is no longer emptied when package with no DLL is
  unloaded (#176).

* The `?` shim no longer interprets `?"/"` as a path (#198).

* rstudioapi is no longer a hard dependency of pkgload (#187).

* Errors thrown in user hooks are now demoted to a warning
  condition. Previously they were demoted using `try()`, making it
  harder to debug them.

* `load_all()` correctly re-loads modified translations, avoiding
  the usual gettext behaviour.

(mef)

doc: Updated devel/R-memoise to 2.0.1

(mef)

(devel/R-memoise) Updated 2.0.0 to 2.0.1

# memoise 2.0.1

# Version 2.0.0.9000

* Winston Chang is now the maintainer.

* The default value for the `hash` argument of `memoise()` is now
  taken with an indirection in case `memoise()` is called at the
  top-level of a namespace (r-lib/rlang#1177).

* Fixed a bug in `has_cache()` that caused it to get the value unnecessarily. (#123)

(mef)

doc: Updated devel/R-usethis to 2.1.6

(mef)

(devel/R-usethis) Updated 2.1.5 to 2.1.6

# usethis 2.1.6

### GitHub-related

`use_github_action()` and friends gain a `ref` argument, which
defaults to the tag of the latest release in
<https://github.com/r-lib/actions> (#1541).

`use_github_actions_badge()` now uses the same URLs as GitHub does via
the "Create status badge" helper in the browser (#1525). This changes
the significance of the `name` argument; now it really must be the
name of the workflow configuration file.

All functions error more clearly when the requested operation is not
supported for the "theirs" remote configuration (#1588).

### Other changes

`use_roxygen_md()` gains an `overwrite` argument (#1599).

`use_rscloud_badge()` is a new function that creates a README badge
indicating the repository can be launched in an [RStudio
Cloud](https://rstudio.cloud) project (@gvelasq, #1584).

`use_data()` gains an `ascii` argument, which is passed along to
`save()` (@JosiahParry, #1625).

`use_code_of_conduct()` has been updated to version 2.1 of the
Contributor Covenant (@batpigandme, #1591).

(mef)

(www/R-urlchecker) Added version 1.0.1

(mef)

www/R-urlchecker: import R-urlchecker-1.0.1

Provide the URL checking tools available in R 4.1+ as a package for
earlier versions of R. Also uses concurrent requests so can be much
faster than the serial versions.

(mef)

(www/R-pkgdown) Added R-pkgdown version 2.0.7

(mef)

www/R-pkgdown: import R-pkgdown-2.0.7

Generate an attractive and useful website from a source package.
'pkgdown' converts your documentation, vignettes, 'README', and more
to 'HTML' making it easy to share information about your package
online.

(mef)

(graphics/R-ragg) version 1.2.4 added

(mef)

graphics/R-ragg: import R-ragg-1.2.4

Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D
drawing library. The 'ragg' package provides a set of graphic devices
based on AGG to use as alternative to the raster devices provided
through the 'grDevices' package.

(mef)

(fonts/R-textshaping) Add new file buildlink3.mk

(mef)

(fonts/R-textshaping) Added

(mef)

fonts/R-textshaping: import R-textshaping-0.3.6

Provides access to the text shaping functionality in the 'HarfBuzz'
library and the bidirectional algorithm in the 'Fribidi' library.
'textshaping' is a low-level utility package mainly for graphic
devices that expands upon the font tool-set provided by the
'systemfonts' package.

(mef)

(fonts/R-systemfonts) New file, buildlink3.mk added

(mef)

doc: Updated mail/spamassassin to 4.0.0

(gdt)

mail/spamassassin: Update to 4.0.0

Tested on NetBSD 9 amd64 with postfix and spamass-milter.  NB the rule
renaming below and the modified init.pre, which will not be merged by
updating if init.pre is locally modifed.

Upstream Release Notes:

Introduction
------------

Apache SpamAssassin 4.0.0 contains numerous tweaks and bug fixes over
the past releases. In particular, it includes major changes that
significantly improve the handling of text in international language.

As with any major release, there are countless functional patches and
improvements to upgrade to 4.0.0. Apache SpamAssassin 4.0.0 includes
several years of fixes that significantly improve classification and
performance. It has been thoroughly tested in production systems. We
strongly recommend upgrading as soon as possible.

Notable features:
=================

New plugins
-----------

There are three new plugins added with this release:

#1 Mail::SpamAssassin::Plugin::ExtractText

This plugin uses external tools to extract text from message parts,
and then sets the text as the rendered part. All SpamAssassin rules
that apply to the rendered part will run on the extracted text as
well.

#2 Mail::SpamAssassin::Plugin::DMARC

This plugin checks if emails match DMARC policy after parsing DKIM and
SPF results.

#3 Mail::SpamAssassin::Plugin::DecodeShortURLs

This plugin looks for URLs shortened by a list of URL shortening
services. Upon finding a matching URL, plugin will send a HTTP request
to the shortening service and retrieve the Location-header which
points to the actual shortened URL. It then adds this URL to the list
of URIs extracted by SpamAssassin which can then be accessed by uri
rules and plugins such as URIDNSBL.

Removed plugin
--------------

HashCash module, formerly deprecated, has now been removed completely

Notable changes
---------------

This release includes fixes for the following:

  - Support for international text such as UTF-8 rules has been
    completed and significantly improved to include native UTF-8
    processing

  - Bayes plugin has been improved to skip common words aka noise
    words written in languages other than English

  - OLEVBMacro plugin has been improved in order to detect more
    Microsoft Office macros and dangerous content. It has also been
    improved to extract URIs from Office documents for automatic
    inclusion in rules such as RBL lookups.

  - You can now use Captured Tags to use tags ���captured��� in one rule
    inside other rules

  - sa-update(1) tool has been improved with three new options:

    #1 forcemirror: forces sa-update to use a specific mirror server,

    #2 score-multiplier: adjust all scores from update channel by a
      given multiplier to quickly level set scores to match your
      preferred threshold

    #3 score-limit adjusts all scores from update channel over a
      specified limit to a new limit

* SSL client certificate support has been improved and made easier to
  implement with spamc/spamd

* DKIM plugin can now detect ARC signatures

* More work on improving the configuration and internal coding to use
  more inclusive and less divisive language

* spamc(1) speed has been improved when both SSL and compression are
  used

* The normalize_charset option is now enabled by default. NOTE: Rules
  should not expect specific non-UTF-8 or UTF-8 encoding in the body.
  Matching is done against the raw body, which may vary depending on
  normalize_charset setting and whether UTF-8 decoding was successful.

* Mail::SPF is now the only supported module used by the SPF plugin.

* Mail::SPF::Query use is deprecated, along with settings
  do_not_use_mail_spf, do_not_use_mail_spf_query.

* SPF lookups are not done asynchronously and you may consider using
  an SPF filter at the MTA level (pypolicyd-spf / spf-engine / etc)
  which generates a Received-SPF header that can be parsed by
  SpamAssassin.

* The default sa-update ruleset doesn't make ASN lookups or header
  additions anymore.  Configure desired methods (asn_use_geodb /
  asn_use_dns) and add_header clauses manually, as described in
  documentation for the Mail::SpamAssassin::Plugin::ASN.

New configuration options
-------------------------

All rules, functions, command line options and modules that contain
"whitelist" or "blacklist" have been renamed to "welcomelist" and
"blocklist" terms

Old options will continue to work for backwards compatibility until at
least the Apache SpamAssassin version 4.1.0 release

New tflag "nolog" added to hide info coming from rules in SpamAssassin
reports

New dns_options "nov4" and "nov6" added.
IMPORTANT:; You must set nov6 if your DNS resolver is filtering IPv6
AAAA replies.

Razor2 razor_fork option added. It will fork separate Razor2 process
and read in the results later asynchronously, increasing
throughput. When this is used, rule priorities are automatically
adjusted to -100.

Pyzor pyzor_fork option added. It will fork separate Pyzor process and
read in the results later asynchronously, increasing throughput. When
this is used, rule priorities are automatically adjusted to -100

urirhsbl and urirhssub rules now support "notrim" tflag, which forces
querying the full hostname, instead of trimmed domain

report_charset now defaults to UTF-8 which may change the rendering of
SpamAssassin reports

Notable Internal changes
------------------------

Meta rules no longer use priority values, they are evaluated
dynamically when the rules they depend on are finished

DNS and other asynchronous lookups like DCC or Razor2 plugins are now
launched when priority -100 is reached. This allows short circuiting
at lower priority without sending unneeded DNS queries

New internal Mail::SpamAssassin::GeoDB module supporting RelayCountry
and URILocalBL plugins provides a unified interface to Geographic IP
modules. These include:
    MaxMind::DB::Reader (GeoIP2)
    Geo::IP
    IP::Country::DB_File
    IP::Country::Fast.

Bayes and TxRep Message-ID tracking now uses a different hashing
method

Optimizations
-------------

Apache SpamAssassin 4.0.0 represents years of work by the project with
numerous improvements, new rule types, and internal native handling of
messages in international languages. These three key optimizations
will improve the efficiency of SpamAssassin:

    DNS queries are now done asynchronously for overall speed
    improvements

    DCC checks can now use dccifd asynchronously for improved throughput

    Pyzor and Razor fork use separate processes done asynchronously
    for increased throughput

(gdt)

net/nng: add use of mk/atomic64.mk, since it's needed.

Fixes build issue on NetBSD/macppc.

(he)

(fonts/R-systemfonts) +pkg-config, + (c c++), +lang/R-cpp11

(mef)

(fonts/R-systemfonts) Correction Updated -> Added

(mef)

+R-systemfonts (Should this be devel category ?)

(mef)

fonts/R-systemfonts: import R-systemfonts-1.0.4

Provides system native access to the font catalogue. As font handling
varies between systems it is difficult to correctly locate installed
fonts across different operating systems. The 'systemfonts' package
provides bindings to the native libraries on Windows, macOS and Linux
for finding font files that can then be used further by e.g. graphic
devices. The main use is intended to be from compiled code but
'systemfonts' also provides access from R.

(mef)

doc: Updated sysutils/felix to 2.2.1

(pin)

sysutils/felix: update to 2.2.1

v2.2.1
What's Changed
- NetBSD fix by @0323pin in #159

v2.2.0
Changed
- IMPORTANT: Trash and log directory path changed.
    - from v2.2.0, felix will use dirs::data_local_dir() to store the deleted
      items and log files, instead of dirs::config_dir().
    - Due to this change, the path for linux will be
      $XDG_DATA_HOME/felix/{Trash, log}, in most case
      /home/user/.local/share/felix/{Trash, log}.
      For Windows {FOLDERID_LocalAppData}\felix\{Trash, log}, typically
      C:\Users\user\AppData\Local\felix\{Trash, log}. No change for macOS users.
    - Note that config file path is unchanged for any OS!
    - Please don't forget deleting old trash diretory and log files if you
      don't want them anymore.
- Refactoring overall.

Added
- :trash to go to the trash directory.

Fixed
- Support NetBSD to open file in a new window by @0323pin in #154
- Properly remove broken symlink in Windows as well. Also, when
  deleting/puttiing a directory, broken symlink(s) in it won't cause any
  error and will be removed from the file system after deleting/putting.

(pin)

doc: Updated sysutils/dua-cli to 2.19.0

(pin)

sysutils/dua-cli: update to 2.19.0

2.19.0 (2022-12-13)
New Features
- Remove the handbrake on MacOS which can now deliver the expected performance.
  Previously it would limit itself to only using 4 threads as it would use a
  lot of time in user space. This has changed now, and the traversal itself is
  much more efficient (even though it could definitely be more efficient when
  comparing to pdu).
  In any case, counting performance should now greatly improve on M1 MacOS
  machines.

Bug Fixes
- resolve stalling issue of previous version. This way, this release is the
  working version of v2.8.1 .

(pin)

doc: Updated sysutils/broot to 1.17.1

(pin)

sysutils/broot: update to 1.17.1

v1.17.1 - 2022-12-15
- Windows specific implementation of :cpp

(pin)

doc: Updated graphics/oculante to 0.6.32

(pin)

graphics/oculante: update to 0.6.32

0.6.32 (2022-12-13)
Features
- Mipmap generation (smoother images when zoomed out) and correct gamme when
  zooming (SRgba8 format) (b83b1c65)

0.6.31 (2022-12-13)
0.6.30 (2022-12-12)
Features
- Correct gamma scaling and SIMD speedup (21d7159b)

Chore
- update dependencies (1c73246b)

0.6.29 (2022-12-12)
Bug Fixes
- Support lossless ops on jpeg and jpg (757b29fc)

(pin)

doc: Updated time/rusti-cal to 1.0.1

(pin)

time/rusti-cal: update to 1.0.1

v1.0.1
What's Changed
- Revert "feat(:nail-care:): dracula-theme" by @arthurhenrique in #51
- revert for color blind by @arthurhenrique in #52

v1.0.0
What's Changed
- Add NetBSD by @0323pin in #39
- chore: add performance checker by @arthurhenrique in #42
- Refactor count_leap_years() and add test cases by @elliotwutingfeng in #40
- Refactor count_leap_years() and add test cases (#40) by @arthurhenrique in #43
- Configure Renovate by @renovate in #44
- feat: show today by @arthurhenrique in #46
- chore: update by @arthurhenrique in #47
- feat(:nail-care:): dracula-theme by @arthurhenrique in #48
- chore: release �泅� by @arthurhenrique in #49

(pin)

doc: Updated editors/tp-note to 1.19.8

(pin)

editors/tp-note: update to 1.19.8

- Improve syntax highlighting,
- remove GPL3.0 licensed dependency.

(pin)

Updated databases/redis, www/py-curl

(adam)

py-curl: updated to 7.45.2

Version 7.45.2

* Python 3.9 compatibility for Py_TRASHCAN_SAFE_BEGIN
  (patch by Scott Talbert).
* Add support for CURL_HTTP_VERSION_3 (patch by Scott Talbert).
* Add CURLOPT_TLS13_CIPHERS and CURLOPT_PROXY_TLS13_CIPHERS options
  (patch by Scott Talbert).
* Added HTTP09_ALLOWED option (patch by Scott Talbert).
* Removed use of distutils (patch by Scott Talbert).

(adam)

redis: updated to 7.0.7

Redis 7.0.7
===========

Upgrade urgency: MODERATE, Contains fix for a regression in Geo commands.

Bug Fixes
* Fix regression from Redis 7.0.6 in distance replies of Geo commands

(adam)

Updated devel/libunit to 1.29.0
Updated www/unit to 1.29.0
Updated www/unit-perl to 1.29.0
Updated www/unit-php to 1.29.0
Updated www/unit-python to 1.29.0
Updated www/unit-ruby to 1.29.0

(osa)

*/*unit*: update NGINX Unit from 1.28.0 to 1.29.0

Remove python 3.11 patch.
Adopt Solaris/Illumos/SmartOS patch.

<ChangeLog>

*) Change: removed $uri auto-append for "share" when loading
  configuration.

*) Change: prefer system crypto policy instead of hardcoding a default.

*) Feature: njs support with the basic syntax of JS template literals.

*) Feature: support per-application cgroups on Linux.

*) Feature: the $request_time variable contains the request processing
  time.

*) Feature: "prefix" option in Python applications to set WSGI
  "SCRIPT_NAME" and ASGI root-path variables.

*) Feature: compatibility with Python 3.11.

*) Feature: compatibility with OpenSSL 3.

*) Feature: compatibility with PHP 8.2.

*) Feature: compatibility with Node.js 19.0.

*) Feature: Ruby Rack v3 support.

*) Bugfix: fix error in connection statistics when using proxy.

*) Bugfix: fix HTTP cookie parsing when the value contains an equals
  sign.

*) Bugfix: PHP directory URLs without a trailing '/' would give a 503
  error (fixed with a 301 re-direct).

*) Bugfix: missing error checks in the C API.

*) Bugfix: report the regex status in configure summary.

</ChangeLog>

(osa)

doc: Updated devel/R-testthat to 3.1.5

(mef)

(devel/R-testthat) Updated 3.1.4 to 3.1.5

# testthat 3.1.5

* Deprecation warnings are no longer captured by `expect_warning(code, NA)`,
  `expect_no_warning(code)`, or `expect_silent(code)`. This ensures that they
  bubble up to the top level so that you can address them (#1680). If you want
  to assert that code does not throw a deprecation warning, use
  `expect_no_condition(code(), class = "lifecycle_warning_deprecation")`.

* New experimental `expect_no_error()`, `expect_no_warning()`,
  `expect_no_message()`, and `expect_no_condition()` for asserting
  the code runs without an error, warning, message, or condition (#1679).

* Fixed a warning in R >=4.2.0 on Windows that occurred when using the C++
  testing infrastructure that testthat provides (#1672).

* Fixed an issue that could prevent compilation of Catch unit tests with
  LLVM 15. In the interim, packages needing a local workaround can set
  `PKG_CPPFLAGS = -DCATCH_CONFIG_CPP11_NO_SHUFFLE` in their `src/Makevars`.
  (@kevinushey, #1687)

* Improve way `capture_output()` handles encoding thanks to suggestion from
  Kurt Hornik (#1693). This means that snapshots using UTF-8 encoded text on
  windows work once again.

* `local_reproducible_output()` will no longer attempt to set the local language
  when `LANG='C'` is set or an R version is used that was not compiled with
  natural language support (NLS), which would previously emit non-test-related
  warnings during testing (@dgkf, #1662; @heavywatal, #1689).

* `test_check()` now suppresses hyperlinks since they'll take you to the wrong
  places (#1648).

* New `set_max_fails()` helper to make it easier to set the maximum number of
  failures before stopping the test suite. And the advice to set to Inf is
  now clickable (#1628).

* You can now configure the behaviour of the implicit
  `devtools::load_all()` call performed by `devtools::test()` in your
  package DESCRIPTION file (#1636). To disable exports of internal
  functions and of testthat helpers, use:

  ```
  Config/testthat/load-all: list(export_all = FALSE, helpers = FALSE)
  ```

  Helpers are now attached on the search path by default after calling
  `devtools::test()`.

(mef)

doc: Updated textproc/py-cmudict to 1.0.12

(gutteridge)

py-cmudict: update to 1.0.12

(Change log entries absent for some releases. Mostly commits and
subsequent reversions it seems. Also some dictionary updates.)

v1.0.12

Bug Fixes

    restored returning a file-like object by _stream() (fa145ec)
    use backported importlib_resources for python 3.9 (1adee16)

Continuous Integration

    removed dependabot-batcher (a517ca4)
    dependabot: updated dependabot prefixes to use conventional commits (570b36c)

Tests

    test_cmudict: added test case for dict_stream() (08f2a08)
    ignore deprecation warning for is_binary (839cd75)

v1.0.3

Maintenance:

    dependency updates
    migrated to poetry
    added bump, publish, release pipeline

(gutteridge)

doc: Updated devel/py-importlib-resources to 5.10.1

(gutteridge)

py-importlib-resources: update to 5.10.1

v5.10.1

    #274: Fixed ResourceWarning in _common.

(gutteridge)

doc: Updated devel/R-cli to 3.4.1

(mef)

(devel/R-cli) Updated 3.3.0 to 3.4.1

# cli 3.4.1

* cli has better error messages now.

* New `format_inline()` argument: `collapse`, to collapse multi-line output,
  potentially because of `\f` characters.

# cli 3.4.0

* New experimental styles to create ANSI hyperlinks in RStudio and
  terminals that support them. See `?cli::links` for details (#513).

* Expressions that start and end with a `{}` substitution are now styled
  correctly. E.g. `{.code {var1} + {var2}}` (#517).

* New `{.obj_type_friendly}` inline style to format the type of an R object
  in a user friendly way (#463).

* Improved vector collapsing behavior. cli now shows both the beginning
  and end of the collapsed vector, by default (#419).

* Nested `cli()` calls work now (#497).

* Return values now work as they should within `cli()` calls (#496).

* Style attributes with underscores have new names with dashes instead:
  `vec_sep`, `vec_last`, `vec_trunc`, `string-quote`. The old names still
  work, but the new ones take precedence (#483).

* cli now does not crash at the end of the R session on Arm Windows
  (#494; @kevinushey)

* Vectors are truncated at 20 elements now by default, instead of 100 (#430).

* 20 new spinners from the awesome
  [cli-spinners](https://github.com/sindresorhus/cli-spinners) package,
  and from @HenrikBengtsson in #469.
  Run this to demo them, some need UTF-8 and emoji support:

  ```r
  new <- c("dots13", "dots8Bit", "sand", "material", "weather", "christmas",
    "grenade", "point", "layer", "betaWave", "fingerDance", "fistBump",
    "soccerHeader", "mindblown", "speaker", "orangePulse", "bluePulse",
    "orangeBluePulse", "timeTravel", "aesthetic", "growVeriticalDotsLR",
    "growVeriticalDotsRL", "growVeriticalDotsLL", "growVeriticalDotsRR")
  demo_spinners(new)
  ```

* cli exit handlers are now compatible again with the withr package (#437).

* cli functions now keep trailing `\f` characters as newlines.
  They also keep multiple consecutive `\f` as multiple newlinees (#491).

* `{}` substitutions within inline styles are now formatted correctly.
  E.g. `{.code download({url})}` will not add backticks to `url`, and
  `{.val pre-{x}-post}` will format the whole value instead of `x`.
  (#422, #474).

* cli now replaces newline characters within `{.class ... }` inline styles
  with spaces. If the `cli.warn_inline_newlines` option is set to TRUE, then
  it also throws a warning. (#417).

* `code_highlight` now falls back to the default theme (instead of no theme)
  for unknown RStudio themes (#482, @rossellhayes).

* `cli_abort()` now supplies `.frame` to `abort()`. This fixes an
  issue with the `.internal = TRUE` argument (r-lib/rlang#1386).

* cli now does a better job at detecting the RStudio build pane, job pane
  and render pane, and their capabilities w.r.t. ANSI colors and hyperlinks.
  Note that this requires a daily build of RStudio (#465).

* New functions for ANSI strings: `ansi_grep()`, `ansi_grepl()`,
  `ansi_nzchar()`. They work like the corresponding base R functions, but
  handle ANSI markup.

* `style_hyperlink()` (really) no longer breaks if the env variable `VTE_VERSION`
  is of the form `\d{4}`, i.e., 4 consecutive numbers (#441, @michaelchirico)

* `cli_dl()` and its corresponding `cli_li()` can now style the labels.

* The behavior cli's inline styling expressions is now more predictable.
  cli does not try to evaluate a styled string as an R expression any more.
  E.g. the meaning of `"{.emph +1}"` is now always the "+1", with style
  `.emph`, even if an `.emph` variable is available and the `.emph + 1`
  expression can be evaluated.

* Functions that apply bright background colors (e.g. `bg_br_yellow()`) now
  close themselves. They no longer format text after the end of the function
  (#484, @rossellhayes).

(mef)

doc: Updated devel/R-rlang to 1.0.6

(mef)

(devel/R-rlang) Updated 1.0.2 to 1.0.6

# rlang 1.0.6

* `as_closure(seq.int)` now works (#1468).

* rlang no longer stores errors and backtraces in a `org:r-lib`
  environment on the search path.

* The low-level function `error_call()` is now exported (#1474).

* Fixed an issue that caused a failure about a missing `is_character`
  function when rlang is installed alongside an old version of vctrs (#1482).

* Fixed an issue that caused multiline calls in backtraces.

* The C API function `r_lgl_which()` now propagates the names of the input
  (#1471).

* The `pkg_version_info()` function now allows `==` for package
  version comparison (#1469, @kryekuzhinieri).

# rlang 1.0.5

* Fixed backtrace display with calls containing long lists of
  arguments (#1456).

* New `r_obj_type_friendly()` function in the C library (#1463). It
  interfaces with `obj_type_friendly()` from `compat-obj-type.R` via a
  C callable.

# rlang 1.0.4

* `is_installed()` no longer throws an error with irregular package
  names.

* `is_installed()` and `check_installed()` now properly detect that
  the base package is installed on older versions of R (#1434).

# rlang 1.0.3

* Child errors may now have empty messages to enable this pattern:

  ```
  Error in `my_function()`:
  Caused by error in `their_function()`:
  ! Message.
  ```

* The `rlib_bytes` class now uses prettyunits to format bytes. The
  bytes are now represented with decimal prefixes instead of binary
  prefixes.

* Supplying a frame environment to the `call` argument of `abort()`
  now causes the corresponding function call in the backtrace to be
  highlighted.

  In addition, if you store the argument name of a failing input in
  the `arg` error field, the argument is also highlighted in the
  backtrace.

  Instead of:

  ```
  cli::cli_abort("{.arg {arg}} must be a foobar.", call = call)
  ```

  You can now write this to benefit from arg highlighting:

  ```
  cli::cli_abort("{.arg {arg}} must be a foobar.", arg = arg, call = call)
  ```

* `abort(message = )` can now be a function. In this case, it is
  stored in the `header` field and acts as a `cnd_header()` method
  invoked when the message is displayed.

* New `obj_type_oo()` function in `compat-obj-type.R` (#1426).

* `friendly_type_of()` from `compat-obj-type.R` (formerly
  `compat-friendly-type.R`) is now `obj_type_friendly()`.

* `options(backtrace_on_error = "collapse")` and `print(trace,
  simplify = "collapse")` are deprecated. They fall back to `"none"`
  with a warning.

* `call_match()` now better handles `...` when `dots_expand = FALSE`.

* `list2(!!!x)` is now faster when `x` is a list. It is now returned
  as is instead of being duplicated into a new list.

* `abort()` gains a `.trace_bottom` argument to disambiguate from
  other `.frame`. This allows `cli::cli_abort()` to wrap `abort()` in
  such a way that `.internal` mentions the correct package to report
  the error in (#1386).

* The `transpose()` compat is now more consistent with purrr when
  inner names are not congruent (#1346).

* New `reset_warning_verbosity()` and `reset_message_verbosity()`
  functions. These reset the verbosity of messages signalled with
  `warn()` and `inform()` with the `.frequency` argument. This is
  useful for testing verbosity in your package (#1414).

* `check_dots_empty()` now allows trailing missing arguments (#1390).

* Calls to local functions that are not accessible through `::` or
  `:::` are now marked with `(local)` in backtraces (#1399).

* Error messages now mention indexed calls like `foo$bar()`.

* New `env_coalesce()` function to copy bindings from one environment
  to another. Unlike approaches based on looping with `[[<-`,
  `env_coalesce()` preserves active and lazy bindings.

* Chaining errors at top-level (directly in the console instead of in
  a function) no longer fails (#1405).

* Warning style is propagated across parent errors in chained error
  messages (#1387).

* `check_installed()` now works within catch-all `tryCatch(error = )`
  expressions (#1402, tidyverse/ggplot2#4845).

* `arg_match()` and `arg_match0()` now mention the correct call in
  case of type error (#1388).

* `abort()` and `inform()` now print messages to `stdout` in RStudio
  panes (#1393).

* `is_installed()` now detects unsealed namespaces (#1378). This fixes
  inconsistent behaviour when run within user onLoad hooks.

* Source references in backtraces and `last_error()`/`last_trace()` instructions
  are now clickable in IDEs that support links (#1396).

* `compat-cli.R` now supports `style_hyperlink()`.

* `abort(.homonyms = "error")` now throws the expected error (#1394).

* `env_binding_are_active()` no longer accidentally triggers active bindings
  (#1376).

* Fixed bug in `quo_squash()` with nested quosures containing the
  missing argument.

(mef)

doc: Updated x11/xfce4-notifyd to 0.6.5

(gutteridge)

xfce4-notifyd: update to 0.6.5

Change log:

0.6.5 (2022-12-16)
=====
- Fix segfault crash.
- Translation Updates:
  Czech, Greek, Hebrew, Kazakh, Occitan (post 1500), Portuguese
  (Brazil)

(gutteridge)

doc: Updated sysutils/xfce4-taskmanager to 1.5.5

(gutteridge)

xfce4-taskmanager: update to 1.5.5

Change log:

1.5.5 (2022-12-16)
=====
- Stick process view at the top in the absence of user action
- Get rid of GtkHeaderBar
- Translation Updates:
  Albanian, Basque, Belarusian, Bulgarian, Catalan, Chinese (China),
  Chinese (Taiwan), Czech, Danish, Dutch, Estonian, French, Galician,
  German, Greek, Hebrew, Indonesian, Italian, Japanese, Kazakh, Korean,
  Lithuanian, Norwegian Bokm鐃緒申l, Occitan (post 1500), Persian (Iran),
  Polish, Portuguese, Portuguese (Brazil), Russian, Serbian, Slovak,
  Spanish, Swedish, Telugu, Thai, Turkish, Ukrainian

(gutteridge)

doc: Updated graphics/ristretto to 0.12.4

(gutteridge)

ristretto: update to 0.12.4

Change log:

0.12.4 (2022-12-16)
======
- Dependency Changes:
  - GLib >= 2.56.0

- Appearance Changes:
  - thumbnailer: Increase thumbnail sizes (#81)

- Code Refactoring:
  - build: Let xdt-depends.m4 macros set GLib macros
  - flatpak: Update D-Bus permissions after changing file manager method
  - flatpak: Updates from Flathub
  - Remove duplicated RsttoMainWindow:device-scale property

- Bug Fixes:
  - use-thunar-properties: Add & improve comments (!37)
  - thumbnailer: Add a warning if D-Bus proxy creation failed
  - Allow Xfconf initialization to fail (#19)
  - thumbnailer: Add missing sanity checks
  - Use a better-known bus name and object path for D-Bus proxy (#95, !36)
  - Properly update iterator when browsing a list containing invalid files (#94)
  - thumbnailer: Remove invalid files after processing thumbnail queue (#94)

- Translation Updates:
  Kazakh, Korean, Occitan (post 1500), Polish, Portuguese

(gutteridge)

Updated multimedia/gstreamer1

(adam)

gstreamer1: updated to 1.20.4

Highlighted bugfixes in 1.20.4

avaudiodec: fix playback issue with WMA files, would throw an error at EOS with FFmpeg 5.x
Fix deadlock when loading gst-editing-services plugin
Fix input buffering capacity in live mode for aggregator, video/audio aggregator subclasses, muxers
glimagesink: fix crash on Android
subtitle handling and subtitle overlay fixes
matroska-mux: allow width + height changes for avc3|hev1|vp8|vp9
rtspsrc: fix control url handling for spec compliant servers and add fallback for incompliant servers
WebRTC fixes
RTP retransmission fixes
video: fixes for formats with 4x subsampling and horizontal co-sited chroma (Y41B, YUV9, YVU9 and IYU9)
macOS build and packaging fixes, in particular fix finding of gio modules on macOS for https/TLS support
Fix consuming of the macOS package as a framework in XCode
Performance improvements
Miscellaneous bug fixes, memory leak fixes, and other stability and reliability improvements

(adam)

doc: Added www/py-sigal version 2.3

(wiz)

www/Makefile: + py-sigal

(wiz)

www/py-sigal: import py-sigal-2.3

Sigal is yet another simple static gallery generator. It's written
in Python and it allows to build a static gallery of images with
the following features:

* Process directories recursively.
* Generate HTML pages using Jinja2 templates.
* Relative links for a portable output.
* Support themes, videos, EXIF tags, zip download.
* Parallel processing.
* MIT licensed.

The idea behind Sigal is to ease the use of the javascript libraries
like galleria. These libraries do a great job to display the images,
Sigal does what is missing: resize images, create thumbnails,
generate HTML pages.

(wiz)

doc: Added graphics/py-pilkit version 2.0

(wiz)

graphics/Makefile: + py-pilkit

(wiz)

graphics/py-pilkit: import py-pilkit-2.0

PILKit is a collection of utilities for working with PIL (the Python
Imaging Library).

One of its main features is a set of processors which expose a
simple interface for performing manipulations on PIL images.

(wiz)

doc: Updated textproc/split-thai to 2.24

(scole)

Update to 2.24
all changes for pthai.el
- use expand-file-name in a few places
- fix pthai-audio-display-definition plumbing
- use call-process* for pthai-mp3-play and pthai-split-command
- rename pthai-splitter-swath-word-length to pthai-splitter-max-swath-word-length
- restore pthai-thai-break-words splitter

(scole)

doc: Added audio/puddletag version 2.0.1

(wiz)

audio/Makefile: + puddletag

(wiz)