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2024-06-06 05:01:40 UTC Now

2022-11-11 13:16:14 UTC MAIN commitmail json YAML

doc: Updated databases/ruby-sqlite3 to 1.5.3

(taca)

2022-11-11 13:15:39 UTC MAIN commitmail json YAML

databases/ruby-sqlite3: update to 1.5.3

1.5.3 (2022-10-11)

Fixed

* Fixed installation of the "ruby" platform gem when building from source on
  Fedora.  In v1.5.0..v1.5.2, installation failed on some systems due to the
  behavior of Fedora's pkg-config implementation.  [#355]

(taca)

2022-11-11 13:14:00 UTC MAIN commitmail json YAML

doc: Updated databases/ruby-sequel to 5.62.0

(taca)

2022-11-11 13:13:39 UTC MAIN commitmail json YAML

databases/ruby-sequel: update to 5.62.0

5.62.0 (2022-11-01)

* Add back the pg_auto_parameterize extension for automatically using bound
  variables when using postgres adapter with pg driver (jeremyevans)

* Add pg_extended_integer_support extension for customizing behavior when
  literalizing a Ruby integer outside PostgreSQL bigint range (jeremyevans)

* Raise Postgres::IntegerOutsideBigintRange if attempting to literalize a
  Ruby integer outside PostgreSQL bigint range (jeremyevans)

* Add primary_key_lookup_check_values plugin for typecasting and checking
  primary key values during lookup (jeremyevans)

* Setup validation of minimum and maximum values for integer columns in
  auto_validations (jeremyevans)

* Add validates_max_value and validates_min_value to validation_helpers
  (jeremyevans)

* Include :min_value and :max_value schema entries for integer columns on
  most databases (jeremyevans)

* Don't wrap multi-inserts in a transaction when it's not required
  (shannoncole, jeremyevans) (#1945)

* Update mock PostgreSQL adapter to default to PostgreSQL 15 instead of
  PostgreSQL 14 (jeremyevans)

* Support fractional seconds in the named_timezones extension (jeremyevans)
  (#1943)

* Cache reflection datasets in the postgres adapter to improve performance
  (jeremyevans)

* Handle BC dates and timestamps in bound variables when using the
  pg_extended_date_support extension (jeremyevans)

* Correctly format hstore[] types in bound variables on PostgreSQL
  (jeremyevans)

* Fix corner case in eager loading where window function eager limit
  strategy is used, but row number entry is not removed (jeremyevans)

* Support server/shard specific :after_connect and :connect_sqls Database
  options (jeremyevans) (#1935)

(taca)

2022-11-11 13:02:14 UTC MAIN commitmail json YAML

doc: Updated databases/ruby-pg to 1.4.4

(taca)

2022-11-11 13:01:50 UTC MAIN commitmail json YAML

databases/ruby-pg: update to 1.4.4

1.4.4 (2022-10-11)

* Revert to let libpq do the host iteration while connecting.  #485 Ensure
  that parameter `connect_timeout` is still respected.
* Handle multiple hosts in the connection string, where only one host has
  writable session. #476
* Add some useful information to PG::Connection#inspect. #487
* Support new pgresult_stream_any API in sequel_pg-1.17.0. #481
* Update Windows fat binary gem to PostgreSQL-14.5.

(taca)

2022-11-11 12:59:44 UTC MAIN commitmail json YAML

doc: Updated databases/ruby-moneta to 1.5.2

(taca)

2022-11-11 12:59:26 UTC MAIN commitmail json YAML

databases/ruby-moneta: update to 1.5.2

1.5.2 (2022-11-10)

* Proxy - handle returning config when the adapter does not use config
* Avoid calling supports?(:expires) when expiry isn't needed
* Adapters::Mongo - fix merge! behaviour when no values are inserted

(taca)

2022-11-11 11:28:29 UTC MAIN commitmail json YAML

Updated lang/py-libcst, devel/py-stevedore

(adam)

2022-11-11 11:27:50 UTC MAIN commitmail json YAML

py-stevedore: updated to 4.1.1

4.1.1
-----
* Order old importlib-metadata results by group

(adam)

2022-11-11 11:26:10 UTC MAIN commitmail json YAML

py-libcst: updated to 0.4.9

0.4.9
Bump setuptools-rust version

0.4.8
Fixed

Fix parse error message for number parsing
Fix problematic doc build, due to the new builder image provided by readthedocs doesn't has the graphviz-dev package pre-installed any more
Fix docstring of FullRepoManager
Fix bug when TypeOf is one of options in OneOf / AllOf
Tighten the metadata type of ExpressionContextProvider
Fix the bug that the use of formatter in codemods has undetermined target Python version, resulting in hard-to-reason-with behavior

Added

Python 3.11 rutime support
test using python 3.11 beta versions
Python 3.11 wheels
Raise informative exception when metadata is unresolved in a metadata-based match
Add AccessorProvider

(adam)

2022-11-11 10:48:08 UTC MAIN commitmail json YAML

doc: Updated x11/ocaml-lablgtk3 to 3.1.3

(jaapb)

2022-11-11 10:47:55 UTC MAIN commitmail json YAML

Updated x11/ocaml-lablgtk3 to newest version 3.1.3.

This adds compatibility with OCaml 5.0.

(jaapb)

2022-11-11 10:33:11 UTC MAIN commitmail json YAML

doc: Updated lang/camlp5 to 8.00.03

(jaapb)

2022-11-11 10:33:00 UTC MAIN commitmail json YAML

Updated textproc/camlp5 to the latest version, 8.00.03.

This includes several changes, including breaking ones; for full details,
see the changelog in the distribution.

This release adds support for the newest OCaml versions up to 4.14.0.

(jaapb)

2022-11-11 10:30:35 UTC MAIN commitmail json YAML

Added camlp-streams to Makefile SUBDIRs

(jaapb)

2022-11-11 10:29:29 UTC MAIN commitmail json YAML

doc: Added devel/camlp-streams version 5.0.1

(jaapb)

2022-11-11 10:29:11 UTC MAIN commitmail json YAML

Added new package camlp-streams, streaming parser libraries for OCaml.

It's needed as a dependency for the new versions of camlp5 and
ocaml-lablgtk.

(jaapb)

2022-11-11 07:52:15 UTC MAIN commitmail json YAML

devel/py-pip: fix build problem with CHECK_PERMS is yes

There might be better way for python package, it works for me.

(taca)

2022-11-10 23:26:12 UTC MAIN commitmail json YAML

doc: Added sysutils/geteltorito version 0.6

(nikita)

2022-11-10 23:25:49 UTC MAIN commitmail json YAML

Import geteltorito version 0.6 as sysutils/geteltorito.

geteltorito is a small Perl script which will extract
(and display information about) an El Torito boot image
from a real CD or a CD image. This helps you modify the boot
image when you want to burn a modified version of the CD in question.

(nikita)

2022-11-10 22:01:39 UTC MAIN commitmail json YAML

doc: Updated shells/nushell to 0.71.0

(pin)

2022-11-10 22:01:15 UTC MAIN commitmail json YAML

shells/nushell: update to 0.71.0

- New ++ operator (merelymyself)
  In this release, you can now use the ++ operator to append lists together.
  For example, you can combine two lists into a new lists made up of the both
  lists.
  Note: Currently, this operator cannot be used to join two tables. This
  functionality is still being worked on and will likely be present in the
  next version.
- Improved consistency across commands and types
  Nushell continues improve quality of the language and shell with a set of
  consistency improvements in this release. These include:
    - More iterating filter commands now support the $in variable consistently
      (webbedspace)
    - Lists now support upsert (fdncred)
    - merge can now also operate on records (webbedspace)
    - str substring can take ranges (rgwood)
    - from and to now show help info (rgwood)
- Right prompts can now be on the last line (nibon7)
  Previously the right prompt appeared only on the same line where the user
  input started. Now you can choose to place the right prompt part on the last
  line of user input. This feature is not enabled by default, you can enable
  it using the config nu command to modify the config.nu file, just set
  render_right_prompt_on_last_line to true.
- Configuring the default value viewer via display_output hook (perbothner)
  You're now able to configure a new hook, called display_output, which will
  become the default way that you view data.
  Using this, you can for example, use table --expand to always see fully
  expanded tables.
  If your terminal supports it, you can this to render a more full-featured
  output. For example, DomTerm could be used by setting the display_output
  hook to: to html --partial --no-color | domterm hcat, sending html to the
  terminal to be rendered when displaying values.
- Updated PR Review Process
  Recently, we have been fortunate to see a rise in submitted pull requests
  and we are super grateful for this growing desire to improve Nushell.
  Unfortunately, in some cases, a well-intended PR does not match the
  direction Nushell is going, forcing us to close it which leads to wasted
  time and effort. To help focus PRs in the future, we kindly ask potential
  contributors to first reach out to us before making a substantial change to
  Nushell, especially if the change will affect user experience. We updated
  our contributing guide as well as the PR template to reflect this policy.
- Completion actions now more familiar (dandavison)
  We've also recently improved how completions work in Nushell to feel closer
  to how other shells work. Specifically:
    - Completion goes "as far as possible". So, the entire word if there's a
      unique completion, or else up to the shared prefix of possible
      completions.
    - Removes the quick completion behavior whereby a word was completed
      automatically as soon as the input came to have a unique completion.
    - Tab now completes instead of selecting the next menu item (this can be
      configured)
- Breaking changes
    - New --force (-f) flag for the mv command. This change alters mv default
      behavior. By default overwriting existing files is now prevented (You can
      use alias mv = mv -f in you config to get the old defaults back). (#6904)
    - The column name for the command name in $nu.scope.commands has been
      changed from command to name. Thus, $nu.scope.commands | where name =~
      zip would give you specific command info. (#7007)
    - The str distance command now directly returns an Int instead of a record
      {"distance": <Int>} (#6963)
    - The argument order of format filesize was made consistent with other
      commands that accept a CellPath to specify fields that should be affected
      by it. Now the string specifying the format is the first positional
      argument and the cell path is specified in the following positional
      argument(s). (#6879)
    - The --perf flag for Nu was removed as part of an effort to simplify
      diagnostics logging #6834

(pin)

2022-11-10 22:00:09 UTC MAIN commitmail json YAML

doc: Updated net/ncgopher to 0.5.0

(pin)

2022-11-10 21:59:44 UTC MAIN commitmail json YAML

net/ncgopher: update to 0.5.0

New features:
  - New shortcut: 'G' to edit current URL
  - Gemini TLS client certificate support

(pin)

2022-11-10 21:58:36 UTC MAIN commitmail json YAML

doc: Updated www/monolith to 2.7.0

(pin)

2022-11-10 21:58:08 UTC MAIN commitmail json YAML

www/monolith: update to 2.7.0

- Add support for whitelisting and blacklisting domains
- Fix bug that prevented processing of XHTML target documents

(pin)

2022-11-10 21:33:06 UTC MAIN commitmail json YAML

2022-11-10 21:29:26 UTC MAIN commitmail json YAML

doc: Updated x11/libX11 to 1.8.2

(wiz)

2022-11-10 21:29:16 UTC MAIN commitmail json YAML

libX11: update to 1.8.2.

This is primarily a bug fix release, including further work on improving
the thread-safety-constructor and making it work with software which had
incorrectly called libX11 functions from inside X*IfEvent() calls.

Highlights:

* Allow X*IfEvent() to reenter libX11 to avoid deadlock from unsafe
  calls when thread-safety-constructor is enabled (!150).
* Remove Xlib's pthread function stubs - instead use system provided
  threads functions, including linking against any needed pthread
  libraries if thread-safety-constructor is enabled (!155, !156).
* Fix off-by-one error in XKeycodeToKeysym for indexes > 3 (!78).
* Allow XNSpotLocation with OnTheSpot (!127).
* Fix Win32 build when -fno-common is in effect (!140).
* Fix memory leak in XRegisterIMInstantiateCallback (!158).
* Add compose sequences for the double-struck capitals ℕ ℤ ℚ ℝ ℂ (!144),
  Samogitian E with dot above and macron (!147), Unicode minus sign (!163).
* Change <Compose> <^> <-> to mean superscript minus instead of macron (!162).
* Delete compose sequences that mix top-row digits with numpad digits (!139)
  or mix upper & lower case letters (!144).
* Delete some unuseful compose sequences meant for Bépo layout (!146).
* Delete compose sequences using leftcaret & rightcaret keysyms (!163).
* Remove KOI8-R character set from en_US.UTF-8/XLC_LOCALE (!148).
* Map sr locales to sr_RS compose files (!161).

Complete changelog:

Adam Jackson (1):
      Allow X*IfEvent() to reenter libX11

Adam Sampson (1):
      xkb: Fix off-by-one error in XKeycodeToKeysym

Alan Coopersmith (11):
      xkb: set num_keys when filling in keys in _XkbReadGetNamesReply()
      doc: Document possible return values for XkbGetKeyboard()
      gitlab CI: stop requiring Signed-off-by in commits
      If thread-safety-constructor is enabled, link against pthreads not stubs
      Use same pthread-stubs as libxcb
      COPYING: remove notice for the removed UIThrStubs.c
      Copyright & license cleanup
      man pages: document XCloseIM frees its argument
      Remove NEWS file which only covered 2006 & 2007 releases
      README.md: Add 1.8.2 changes
      libX11 1.8.2

Benno Schulenberg (13):
      nls: delete compose sequences that mix top-row digits with numpad digits
      docs: hard-wrap some items so that Table 2 fits within 80 characters
      docs: remove the unsightly dashes from the overviews of arguments
      docs: replace three placeholders with something that makes sense
      nls: delete some pointless and wrong compose sequences meant for Bépo
      nls: add compose sequences for the double-struck capitals ℕ ℤ ℚ ℝ ℂ
      nls: delete eight sequences that pointlessly mix upper and lower case
      nls: add four sequences for the Samogitian E with dot above and macron
      nls: delete two compose sequences with an anomalous post-fixed breve
      nls: change <Compose> <^> <-> to mean superscript minus instead of macron
      nls: let `<Multi_key> <minus> <underscore>` compose U+2212 (MINUS SIGN)
      nls: remove two compose sequences that use deprecated symbols
      nls: reshuffle a few compose sequences, to have similar ones together

David H. Gutteridge (1):
      configure.ac: report thread safety constructor build status

Jan Tojnar (1):
      nls: Map sr locales to sr_RS compose files

Jon Turney (1):
      Fix Win32 build with -fno-common

Kirill Chibisov (1):
      ximcp/imRm.c: allow XNSpotLocation with OnTheSpot

Matthieu Herrb (1):
      Mention that the predicate function is called with the display lock

Mike FABIAN (1):
      Remove KOI8-R character set from en_US.UTF-8/XLC_LOCALE

Po Lu (1):
      specs: document change in XIMPreeditCallbacks

Thomas E. Dickey (4):
      reduce compiler warnings for macros BufAlloc, Data and Data32 using casts
      use casts to reduce compiler warnings (no object change)
      reduce compiler warnings with casts (no object change)
      fix a memory leak in XRegisterIMInstantiateCallback

(wiz)

2022-11-10 21:12:54 UTC MAIN commitmail json YAML

gitea: use find(1) in a more portable way

Verified on NetBSD, Linux (Debian 10.13), and macOS (all amd64).

No changes to the package observed, so no revision bump.

(khorben)

2022-11-10 19:25:49 UTC MAIN commitmail json YAML

doc: Updated devel/nss to 3.85

(wiz)

2022-11-10 19:25:25 UTC MAIN commitmail json YAML

nss: update to 3.85.

Changes:
    - Bug 1792821 - Modification of the primes.c and dhe-params.c in order to have better looking tables.
    - Bug 1796815 - Update zlib in NSS to 1.2.13.
    - Bug 1796504 - Skip building modutil and shlibsign when building in Firefox.
    - Bug 1796504 - Use __STDC_VERSION__ rather than __STDC__ as a guard.
    - Bug 1796407 - Fix -Wunused-but-set-variable warning from clang 15.
    - Bug 1796308 - Fix -Wtautological-constant-out-of-range-compare and -Wtype-limits warnings.
    - Bug 1796281 - Followup: add missing stdint.h include.
    - Bug 1796281 - Fix -Wint-to-void-pointer-cast warnings.
    - Bug 1796280 - Fix -Wunused-{function,variable,but-set-variable} warnings on Windows.
    - Bug 1796079 - Fix -Wstring-conversion warnings.
    - Bug 1796075 - Fix -Wempty-body warnings.
    - Bug 1795242 - Fix unused-but-set-parameter warning.
    - Bug 1795241 - Fix unreachable-code warnings.
    - Bug 1795222 - Mark _nss_version_c unused on clang-cl.
    - Bug 1795668 - Remove redundant variable definitions in lowhashtest.
    - No bug - Add note about python executable to build instructions.

(wiz)

2022-11-10 17:36:54 UTC MAIN commitmail json YAML

Updated games/quakespasm to 0.95.1

(snj)

2022-11-10 17:35:54 UTC MAIN commitmail json YAML

quakespasm: update to 0.95.1

Changes in 0.95.1

  * Allow mixing lit and unlit textures in the same map.
  * Water texture mipmapping support - fixes glistening effect on distant
    water.
  * Fix screen flashes in some maps with AMD's new drivers.
  * Defend against zero-sized textures, e.g. __TB_empty in qbj_grue.bsp
  * Fix possible file pointer leak in game load code.
  * Minor code cleanups. Updated third party code, e.g. SDL, music codecs, etc.
  * Thanks to 'temx' for his patches.

Changes in 0.95.0

  * Add support for lit water (patch contributed by Josiah Jack, with fixes
    from Eric Wasylishen.)
  * Add model scale support -- requires protocol 999. (Original patch
    contributed by Josiah Jack with fixes from temx and Andrei Drexler. Thanks
    to Eric Wasylishen, MH and Spike for useful discussions.)
  * Add sv_cheats cvar for 2021 rerelease (patch from Andrei Drexler).
  * Clear the startdemo list on game change (patch by Andrei Drexler).
  * Try light trace from entity origin first (patch by Andrei Drexler).
  * Backport a few fixes to the bundled SDL2-2.0.22 version.

Changes in 0.94.7

  * Fix console history buffer wrapping.
  * Fix wrong external texture use after vid_restart.
  * Update lodepng from mainstream git.
  * Miscellaneous source code cleanups.

Changes in 0.94.6

  * Server protocol size check fixes for sounds and particles.
  * An invalid memory access fix in the jpg screenshot writer.
  * Basic dependency tracking in Makefiles.
  * Backported a few fixes to the bundled SDL2-2.0.22 version.
  * Minor build fix for C++ compilers.
  * Other small improvements elsewhere in the code.

Changes in 0.94.5

  * Compatibility with new SDL2 versioning scheme.
  * Revised min/max/clamp macros' usage.
  * Fixed a potential undefined behavior in R_DrawAliasModel.
  * Fixed parsing of the time argument of svc_fog server message. (it has been
    broken for more than 20 years and has never seem to have been used.)
  * Other small improvements elsewhere in the code.
  * Backported a few fixes to the bundled SDL2-2.0.22 version.

(snj)

2022-11-10 14:59:03 UTC MAIN commitmail json YAML

doc: Updated devel/php-igbinary to 3.2.12

(taca)

2022-11-10 14:58:38 UTC MAIN commitmail json YAML

devel/php-igbinary: update to 3.2.12

3.2.12 (2022-11-07)

* Fix symbol error seen in php 8.2.0 loading zend_class_unserialize_deny,
  due to failing to load a header defining a macro.

(taca)

2022-11-10 14:32:44 UTC MAIN commitmail json YAML

ham/hamlib: Use github as MASTER_SITES

Upstream just documented the github/sourceforge relationship.
(Same bits, so no change to package.)

(gdt)

2022-11-10 14:23:53 UTC MAIN commitmail json YAML

devel/hex: simplify, use lang/elixir/mix.mk.

(nikita)

2022-11-10 14:23:15 UTC MAIN commitmail json YAML

lang/elixir: Add code to simplify handling mix build system.
Inspired by FreeBSD ports' elixir.mk

(nikita)

2022-11-10 14:22:14 UTC MAIN commitmail json YAML

ham/hamlib: Add commented-out github fetch variables

(This is still on sourceforge.)

(gdt)

2022-11-10 13:43:06 UTC MAIN commitmail json YAML

ham/hamlib: Adjust comments about distfiles

(This is a comment-only change.)

(gdt)

2022-11-10 13:04:09 UTC MAIN commitmail json YAML

Note update of net/routinator to 0.12.0.

(he)

2022-11-10 13:03:30 UTC MAIN commitmail json YAML

Upgrade routinator to version 0.12.0.

Pkgsrc changes:
* Update cargo-depends.mk, update checksums.

Upstream changes:

## 0.12.0 "Brutalism and Gardening"

Released 2022-11-10.

Bug Fixes

* Remove a stray newline in summary output.

## 0.12.0-rc1

Released 2022-11-02.

Breaking Changes

* Restructured the TAL configuration in response to the dropped requirement
  to opt into the ARIN TAL.

  Routinator will now use the bundled RIR TALs directly unless told otherwise
  by the new `--no-rir-tals` command  line and config option. The additional
  bundled TALs can be added via the new `--tal` command line and config
  option. Additionally, the TAL directory can still be used via the
  `--extra-tals-dir` option. The `tal-dir` option has been removed but will
  still be accepted *and ignored* in the config file only.

  The `init` command has been removed. ([#796])
* Changed the default configuration option for `unsafe-vrps` to `accept`
  and removed all logging or mentioning of unsafe VRPs in this case.
  ([#761])
* Setting the `rsync-timeout` option to 0 now disables the rsync timeout.
  ([#798])
* Refactored error handling. Routinator now logs the reason why an object
  failed verification or was otherwise rejected. ([#755])
* Removed the deprecated `rrdp-disable-gzip` configuration option.
  ([#769])

New

* The new `limit-v4-len` and `limit-v6-len` command line and config file
  options allow limiting the length of IPv4 and IPv6 prefixes,
  respectively, to be included in the VRP data set. ([#810])
* The new `rrdp-fallback` command line and config file option
  allows specifying the circumstances under which a failed RRDP fetch
  should result in using rsync instead. Supported polices are `never` for
  never falling back to using rsync, `stale` for the current behavior of
  falling back when RRDP has failed for some time, and `new` to only fall
  back for repositories where RRDP has never worked before. ([#799])
* In the extended `jsonext` output format, the information for VRPs and
  router keys derived from RPKI data has gained a new member `"tal"` that
  shows the name of the TAL this object was published under. ([#765])
* The log output to files, stderr, and the `/log` HTTP endpoint now
  includes the log level of the message to make it more clear how
  important the message really is. ([#797])
* The RTR client metrics have been extended by three new values allowing
  to track the time since last cache reset and the number of reset and
  serial queries. Like all RTR client metrics, these new values are only
  available if enable explicitly via the `rtr-client-metrics` config option.
  ([#800])
* TCP keepalive is now enabled for RRDP connections. The keepalive
  duration can be configured via the new command line and config file option
  `rrdp-tcp-keepalive`. ([#801])

Bug Fixes

* Fixed an issue in error handling in the RRDP collector that causes
  Routinator to exit if it encountered malformed Base 64 in RRDP snapshot
  and delta files. (Found by Donika Mirdita and Haya Shulman. Assigned
  [CVE-2022-3029].) ([#784])
* Fixed an issue where RRDP snapshots and deltas with a status code other
  than 200 OK were accepted and processed. ([#802])
* Changed how Routinator deals with files in the store that cannot be
  parsed. These will now be ignored and the publication point stored in
  them considered not available. ([#803])
* When piping output from the `vrps` command into something else, a broken
  pipe will not lead to an error message any more. ([#807])
* Fixed various issues with the calculation of RTR metrics. ([#811])

Other Changes

* The minimal required Rust version has been increased to 1.60. ([#792])
* The default Docker image now listens on both port 8323 and 9556 for HTTP
  requests. ([#809])

[#755]: https://github.com/NLnetLabs/routinator/pull/755
[#761]: https://github.com/NLnetLabs/routinator/pull/761
[#765]: https://github.com/NLnetLabs/routinator/pull/765
[#769]: https://github.com/NLnetLabs/routinator/pull/769
[#783]: https://github.com/NLnetLabs/routinator/pull/784
[#792]: https://github.com/NLnetLabs/routinator/pull/792
[#796]: https://github.com/NLnetLabs/routinator/pull/796
[#797]: https://github.com/NLnetLabs/routinator/pull/797
[#798]: https://github.com/NLnetLabs/routinator/pull/798
[#799]: https://github.com/NLnetLabs/routinator/pull/799
[#800]: https://github.com/NLnetLabs/routinator/pull/800
[#801]: https://github.com/NLnetLabs/routinator/pull/801
[#802]: https://github.com/NLnetLabs/routinator/pull/802
[#803]: https://github.com/NLnetLabs/routinator/pull/803
[#807]: https://github.com/NLnetLabs/routinator/pull/807
[#809]: https://github.com/NLnetLabs/routinator/pull/809
[#810]: https://github.com/NLnetLabs/routinator/pull/810
[#811]: https://github.com/NLnetLabs/routinator/pull/811

(he)

2022-11-10 12:59:13 UTC MAIN commitmail json YAML

ham/hamlib: Recover from using a github distfile

The distfile from github is currently broken, or has been attacked,
and our distinfo scheme caught that.  Or perhaps it was always not ok.
Switch to sourceforge which serves a file that has a sensible diff
from 4.3.1 and matches the distinfo I generated earlier.

No change to binary package, but PKGREVISION++ because of MASTER_SITES change.

(gdt)

2022-11-10 12:24:38 UTC MAIN commitmail json YAML

doc: Added devel/hex version 2.0.0

(nikita)

2022-11-10 12:24:08 UTC MAIN commitmail json YAML

Import elixir-hex version 2.0.0 as devel/hex.

Hex is package manager for the Erlang VM.

This project currently provides tasks that
integrate with Mix, Elixir's build tool.

See https://hex.pm for more documentation.

(nikita)

2022-11-10 12:20:53 UTC MAIN commitmail json YAML

lang/gleam: commit forgotten distinfo change.

(nikita)

2022-11-10 09:34:21 UTC MAIN commitmail json YAML

doc: Updated devel/rebar3 to 3.20.0

(nikita)

2022-11-10 09:30:00 UTC MAIN commitmail json YAML

rebar3: update to version 3.20.0

Changelog (taken from https://github.com/erlang/rebar3/releases/tag/3.20.0):

This release took a while to build; OTP-25.1 had incompatibilities with EUnit
that interrupted the CI process, and which are corrected in later releases.

New features:
    Add --eval option to shell
    Add support for dialyzer --incremental when available
    Vendor structure

This new vendor structure should be of no impact to anyone using Rebar3 as a
built artifact, but should make the life of corporate users and
package managers much easier by having pre-bundled in all dependencies and
allowing effective offline builds. It also simplifies our bootstrap code and
reduces security issues by not having to download a certificate bundle
without certificates, at least until our oldest supported version can use
Erlang's new built-in on-host certificate lookup mechanisms.

If you do rely on Rebar3 source for your tooling or any other mechanisms,
then you will want to cd apps/rebar before running other commands.

Other fixes:
    Warn of EUnit issues on OTP-25.1
    Respect HEX_MIRROR environment variable
    Use shell:start_interactive to start shell if available
    Do not send empty If-None-Match in tarball request
    Respect rebar_packages_cdn set in rebar.config
    Dereference symbolic links when copying files from ct data folder
    Reduce warnings around bootstrap and DAG operations

(nikita)

2022-11-10 08:19:36 UTC MAIN commitmail json YAML

py-colorama: switch to MASTER_SITE_WHEEL for Python 2.7

(adam)

2022-11-10 01:41:38 UTC MAIN commitmail json YAML

doc: Updated graphics/screengrab to 2.5.0

(gutteridge)

2022-11-10 01:41:25 UTC MAIN commitmail json YAML

screengrab: update to 2.5.0

Change log:

2.5.0 / 2022-11-05
==================
* Fixed the screenshot of window and its decoration with multi-screen setups.
* Removed shared libraries.

(gutteridge)

2022-11-10 01:11:06 UTC MAIN commitmail json YAML

doc: Updated x11/qterminal to 1.2.0

(gutteridge)

2022-11-10 01:10:55 UTC MAIN commitmail json YAML

qterminal: update to 1.2.0

Change log:

qterminal-1.2.0 / 2022-11-05
=============================
* Add CI using GitHub Actions.
* Fixed command parsing with the `-e` option.
* Avoid segfault when using global menus.
* Improved documentation for the `--profile` option.

(gutteridge)

2022-11-10 01:08:01 UTC MAIN commitmail json YAML

doc: Updated x11/qtermwidget to 1.2.0

(gutteridge)

2022-11-10 01:07:39 UTC MAIN commitmail json YAML

qtermwidget: update to 1.2.0

Change log:

qtermwidget-1.2.0 / 2022-11-05
===============================
* Enabled Bidi rendering by default.
* Made text DND follow the settings for newline trimming and multiline prompt.
* Allow `QTermWidget` to be used as a Qt Plugin.

(gutteridge)

2022-11-10 01:03:49 UTC MAIN commitmail json YAML

doc: Updated x11/qtxdg-tools to 3.10.0

(gutteridge)

2022-11-10 01:03:34 UTC MAIN commitmail json YAML

qtxdg-tools: update to qtxdg-tools-3.10.0

Change log:

qtxdg-tools-3.10.0 / 2022-11-05
===============================
* Updated for libqtxdg-3.10.

(gutteridge)

2022-11-10 01:00:22 UTC MAIN commitmail json YAML

doc: Updated x11/libqtxdg to 3.10.0

(gutteridge)

2022-11-10 01:00:11 UTC MAIN commitmail json YAML

libqtxdg: update to libqtxdg-3.10.0

Change log:

libqtxdg-3.10.0 / 2022-11-05
============================
* Invalidate GTK icon cache as soon as icons are installed.
* Follow `freedesktop.org` in adding dirs under `DefaultDirectoryDirs`.

(gutteridge)

2022-11-10 00:53:30 UTC MAIN commitmail json YAML

doc: Updated devel/lxqt-build-tools to 0.12.0

(gutteridge)

2022-11-10 00:53:13 UTC MAIN commitmail json YAML

lxqt-build-tools: update to 0.12.0

lxqt-build-tools-0.12.0 / 2022-11-05
====================================
* Support absolute `CMAKE_INSTALL_{INCLUDE,LIB}DIR` in `LXQtCreatePkgConfigFile`.
* Use `gdesktopappinfo.h` to find gio-unix-2.0 in `FindGLIB.cmake`.
* Drop use of `-Bsymbolic` in `LXQtCompilerSettings`.

(gutteridge)

2022-11-09 23:26:36 UTC MAIN commitmail json YAML

doc: Updated www/gitea to 1.16.9

(khorben)

2022-11-09 23:26:15 UTC MAIN commitmail json YAML

gitea: update to 1.16.9

Changes since 1.16.8:

SECURITY

* Add write check for creating Commit status (#20332) (#20334)
* Check for permission when fetching user controlled issues (#20133) (#20196)

BUGFIXES

* Hide notify mail setting ui if not enabled (#20138) (#20337)
* Add write check for creating Commit status (#20332) (#20334)
* Only show Followers that current user can access (#20220) (#20253)
* Release page show all tags in compare dropdown (#20070) (#20071)
* Fix permission check for delete tag (#19985) (#20001)
* Only log non ErrNotExist errors in git.GetNote (#19884) (#19905)
* Use exact search instead of fuzzy search for branch filter dropdown (#19885) (#19893)
* Set Setpgid on child git processes (#19865) (#19881)
* Import git from alpine 3.16 repository as 2.30.4 is needed for safe.directory = '*' to work but alpine 3.13 has 2.30.3 (#19876)
* Ensure responses are context.ResponseWriters (#19843) (#19859)
* Fix incorrect usage of Count function (#19850)
* Fix raw endpoint PDF file headers (#19825) (#19826)
* Make WIP prefixes case insensitive, e.g. allow Draft as a WIP prefix (#19780) (#19811)
* Don’t return 500 on NotificationUnreadCount (#19802)
* Prevent NPE when cache service is disabled (#19703) (#19783)
* Detect truncated utf-8 characters at the end of content as still representing utf-8 (#19773) (#19774)
* Fix doctor pq: syntax error at or near “.” quote user table name (#19765) (#19770)
* Fix bug with assigneees (#19757)

(khorben)

2022-11-09 22:59:49 UTC MAIN commitmail json YAML

py-rstr: python 3.x only

(wiz)

2022-11-09 22:51:19 UTC MAIN commitmail json YAML

py-reprotest: for python 3.x only

Perhaps even 3.9+, but the bulk builds will tell

(wiz)

2022-11-09 22:46:49 UTC MAIN commitmail json YAML

py-colorama: add missing tool dependency on py-hatchling

(wiz)

2022-11-09 22:26:58 UTC MAIN commitmail json YAML

doc: Added sysutils/py-reprotest version 0.7.22

(khorben)

2022-11-09 22:26:45 UTC MAIN commitmail json YAML

sysutils: add py-reprotest

(khorben)

2022-11-09 22:26:26 UTC MAIN commitmail json YAML

py-reprotest: import version 0.7.22

reprotest builds the same source code twice in different environments, and then
checks the binaries produced by each build for differences. If any are found,
then diffoscope(1) (or if unavailable then diff(1)) is used to display them in
detail for later analysis.

(khorben)

2022-11-09 22:21:53 UTC MAIN commitmail json YAML

doc: Added devel/py-rstr version 3.2.0

(khorben)

2022-11-09 22:21:34 UTC MAIN commitmail json YAML

devel: add py-rstr

(khorben)

2022-11-09 22:20:47 UTC MAIN commitmail json YAML

py-rstr: import version 3.2.0

rstr is a helper module for easily generating random strings of various types.
It could be useful for fuzz testing, generating dummy data, or other
applications.

(khorben)

2022-11-09 22:10:32 UTC MAIN commitmail json YAML

doc: Updated sysutils/py-diffoscope to 226

(khorben)

2022-11-09 22:10:21 UTC MAIN commitmail json YAML

py-diffoscope: update to 226

Changes since 224:

[ Christopher Baines ]
* Add an lzip comparator with tests.

[ Chris Lamb ]
* Add support for comparing the "text" content of HTML files using html2text.
  (Closes: #1022209, reproducible-builds/diffoscope#318)
* Misc/test improvements:
  * Drop the ALLOWED_TEST_FILES test; it's mostly just annoying.
  * Drop other copyright notices from lzip.py and test_lzip.py.
  * Use assert_diff helper in test_lzip.py.
  * Pylint tests/test_source.py.

[ Mattia Rizzolo ]
* Add lzip to debian dependencies.

[ Chris Lamb ]
* Add support for detecting ordering-only differences in XML files.
  (Closes: #1022146)
* Fix an issue with detecting ordering differences. (Closes: #1022145)
* Add support for ttx(1) from fonttools.
  (Re: reproducible-builds/diffoscope#315)
* Test improvements:
  - Tidy up the JSON tests and use assert_diff over get_data and manual
    assert in XML tests.
  - Rename order1.diff to json_expected_ordering_diff for consistency.
  - Temporarily allow the stable-po pipeline to fail in the CI.
* Use consistently capitalised "Ordering" everywhere we use the word in
  diffoscope's output.

(khorben)

2022-11-09 22:07:58 UTC MAIN commitmail json YAML

doc: Updated sysutils/py-diffoscope to 224

(khorben)

2022-11-09 22:07:36 UTC MAIN commitmail json YAML

py-diffoscope: update to 224

Changes:

[ Mattia Rizzolo ]
* Fix rlib test failure with LLVM 15. Thanks to Gianfranco Costamagna
  (locutusofborg) for the patch.

[ Chris Lamb ]
* The cbfstools utility is now provided in Debian via the coreboot-utils
  Debian package, so we can enable that functionality within Debian.
  (Closes: #1020630)

[ Mattia Rizzolo ]
* Also include coreboot-utils in Build-Depends and Test-Depends so it is
  available for the tests.

[ Jelle van der Waa ]
* Add support for file 5.43.

[ Mattia Rizzolo ]
* Use pep517 and pip to load the requirements. (Closes: #1020091)
* Remove old Breaks/Replaces in debian/control that have been obsoleted since
  bullseye

* Don't crash if we can open a PDF file with PyPDF but cannot parse the
  annotations within. (Closes: reproducible-builds/diffoscope#311)
* Depend on the dedicated xxd package, not vim-common.
* Update external_tools.py to reflect xxd/vim-common change.

* Support Haskell 9.x series files and update the test files to match. Thanks
  to Scott Talbert for the relevant info about the new format.
  (Closes: reproducible-builds/diffoscope#309)
* Fix a regression introduced in diffoscope version 207 where diffoscope
  would crash if one directory contained a directory that wasn't in the
  other. Thanks to Alderico Gallo for the report and the testcase.
  (Closes: reproducible-builds/diffoscope#310)

More at https://diffoscope.org/

(khorben)

2022-11-09 17:29:47 UTC MAIN commitmail json YAML

doc: Updated lang/gleam to 0.24.0

(nikita)

2022-11-09 17:29:36 UTC MAIN commitmail json YAML

gleam: Update to version 0.24.0

Changelog (adapted from https://gleam.run/news/):

Gleam 0.24:
- In-project Elixir support
- <> operator which works on strings
In addition to those main features we窶况e fixed bugs and improved
error messages, the highlights being:
- Elixir dependency package support now works on Windows.
- If the programmer attempts to use the object-oriented method call
  syntax (value.method()) we now return a more detailed error that
  explains that Gleam is not object oriented, and suggests using the
  functional syntax. This will hopefully help people who are less
  familiar with functional programming languages.

Version 0.23:
- Ability to add Elixir packages to Gleam projects.
- package updating via 'gleam update'
- searchable documentation for packages
Those are the main features, but there窶冱 also an assortment of
other changes:
- Constant expressions can now contain and reference functions.
- Compiler performance has been improved by buffering outputs and
  lazily loading resources. In tests this quadrupled performance
  when compiling the standard library.
- The LSP will now provide rudimentary autocompletion for importable
  modules.
- The code formatter style has been improved.
- The gleam publish command will include the priv directory
  (for non-code package artefacts) and can be run non-interactively.

Version 0.22:
- generation of TypeScript declaration files
- Multi-variant accessors
- new 'gleam export' command to help deploy artefacts,
  'gleam export erlang-shipment' will produce a directory
  of Erlang bytecode and configuration.
- Automatable package publishing via hex with gleam publish.
- better debugging

(nikita)

2022-11-09 16:59:05 UTC MAIN commitmail json YAML

doc: Added lang/kona version 0.0.0.2021.12.25

(nikita)

2022-11-09 16:58:35 UTC MAIN commitmail json YAML

Import kona version 0.0.0.2021.12.25 as lang/kona.

Kona is the open-source implementation of the k3 programming language.
k is a synthesis of APL and LISP. Although many of the capabilities
come from APL, the fundamental data construct is quite different.
In APL the construct is a multi-dimensional matrix-like array, where
the dimension of the array can range from 0 to some maximum (often 9).
In k, like LISP, the fundamental data construct is a list. Also, like
LISP, the k language is ASCII-based, so you don't need a special keyboard.

For many people, k was the preferred APL dialect.
When it was available, it tended to be popular with investment bankers,
the performance obsessed, and analysts dealing with lots of data.
It is a demanding language.

(nikita)

2022-11-09 15:04:06 UTC MAIN commitmail json YAML

cfs: add comment for where to find a newer version of this

(wiz)

2022-11-09 14:54:40 UTC MAIN commitmail json YAML

doc: Updated cad/klayout to 0.27.12

(mef)

2022-11-09 14:54:26 UTC MAIN commitmail json YAML

(cad/klayout) Updated to 0.27.12

0.27.12          (2022-11-01):
* Bugfix: %GITHUB%/issues/1173 DXF SPLINE implementation not compatible with ezdxf
* Bugfix: %GITHUB%/issues/1167 delete_cells slow in some cases
* Bugfix: %GITHUB%/issues/1164 Deleting cells: 'basic_string: construction from null is not valid'
* Bugfix: %GITHUB%/issues/1145 Crash when clearing a Shapes container by script while a shape is selected
* Bugfix: %GITHUB%/issues/1144 Copy layer not choosing the right "new" target layer sometimes
* Bugfix: %GITHUB%/issues/1143 DBU not taken from technology by default
* Bugfix: %GITHUB%/issues/1097 Change oasis writer defaults to strict + cblocks, discourage the usage of oas.gz
* Bugfix: Incorrect behavior of some deep-mode DRC functions
  - deep edges "and" with Region: incorrect behavior if region is empty or non-deep
  - deep edges "inside_part" with Region: incorrect behavior if region is empty or non-deep
  - deep edges "outside_part" with Region: incorrect behavior if region is empty or non-deep
* Enhancement: Python include files are now provided for the Python package. This will add type information to the methods.

(mef)

2022-11-09 14:53:15 UTC MAIN commitmail json YAML

doc: Updated devel/php-xdebug to 3.1.6

(taca)

2022-11-09 14:52:48 UTC MAIN commitmail json YAML

devel/php-xdebug: update to 3.1.6

3.1.6 (2022-11-08)

Fixed bugs:

* Fixed issue #2100: "Fatal error: debuginfo() must return an array" when
  Exception is thrown from debugInfo in PHP 8.x
* Fixed issue #2101: When a temporary breakpoint is hit, breakpoint_list
  should show it as disabled
* Fixed issue #2129: Cannot read snapshot Gzip-compressed data is corrupt

(taca)

2022-11-09 14:47:43 UTC MAIN commitmail json YAML

doc/TODO: + gtexinfo-7.0, meson-0.64.

(wiz)

2022-11-09 14:45:35 UTC MAIN commitmail json YAML

Updated math/py-pythran, net/py-subunit

(adam)

2022-11-09 14:45:02 UTC MAIN commitmail json YAML

py-subunit: updated to 1.4.1

1.4.1

IMPROVEMENTS
* Add support for Python 3.9
* Add support for Python 3.10
* Drop support for Python 2.7, 3.4, and 3.5
* Convert python scripts to entry_points.
* Migrate CI from travis to GitHub actions.
* Add options to output filter to set timestamps.
* Remove dependency on unittest2.

BUGFIXES
* Fix tests with testtools >= 2.5.0.
* Mark rawstrings as such, fixing warnings.

(adam)

2022-11-09 14:41:16 UTC MAIN commitmail json YAML

py-pythran: updated to 0.12.0

0.12.0
Improve numpy expression computation speed
Decent ICC support (fixing an issue from 2018!)
Much faster C++ code generation
Complete rework of constant folder
Support C++-time evaluation of numpy.ndarray.ndim
Improved omp declare reduction support
Allow indexing of ndarray by integers of mixed types
A lot of small pesty bug fixes in the C++ headers

(adam)

2022-11-09 13:33:43 UTC MAIN commitmail json YAML

doc: Added www/cobalt version 0.18.3

(nikita)

2022-11-09 13:32:49 UTC MAIN commitmail json YAML

Import cobalt version 0.18.3 as www/cobalt.

Cobalt is a static website generator in a single binary with
everything built-in.

(nikita)

2022-11-09 13:14:32 UTC MAIN commitmail json YAML

2022-11-09 13:01:13 UTC MAIN commitmail json YAML

doc: Updated mail/evolution to 3.34.1nb17

(wiz)

2022-11-09 13:00:58 UTC MAIN commitmail json YAML

2022-11-09 11:40:23 UTC MAIN commitmail json YAML

Note update of security/opendnssec2 to 2.1.12.

(he)

2022-11-09 11:39:43 UTC MAIN commitmail json YAML

Update OpenDNSSEC2 to version 2.1.12.

Pkgsrc changes:
* Adapt patch, update checksums.

Upstream changes:

OpenDNSSEC 2.1.12 - 2022-11-08

* Ensure debug symbols on RPM-style builds.
* Bug fix that prevented restoring state from when salt length was zero.
* Bug fix for enforcer daemon crash after deleting key on some systems.

OpenDNSSEC 2.1.11 - 2022-09-17

* Improper re-use of already used keys when using <SharedKeys/> as
  a consequence of previous bug in 2.1.6
* Improved reporting upon segmentation faults or similar aborts.
* Fix for migration to resalt of length 0.
* Fix for upstream nameserver, implementing IXFR but without support
  for IXFR for that specific zone and responding without AXFR.
* Degraded log message key_update_failed because this action is retried.

(he)

2022-11-09 09:32:34 UTC MAIN commitmail json YAML

Updated devel/py-prompt_toolkit, www/py-httpcore

(adam)

2022-11-09 09:32:18 UTC MAIN commitmail json YAML

py-httpcore: updated to 0.16.0

0.16.0
- Support HTTP/1.1 informational responses.
- Fix async cancellation behaviour.
- Support `h11` 0.14.

(adam)

2022-11-09 09:25:26 UTC MAIN commitmail json YAML

py-prompt_toolkit: updated to 3.0.32

3.0.32: 2022-11-03
------------------
Bug fixes:
- Use `DummyInput` by default in `create_input()` if `sys.stdin` does not have
  a valid file descriptor. This fixes errors when `sys.stdin` is patched in
  certain situations.
- Fix control-c key binding for `ProgressBar` when the progress bar was not
  created from the main thread. The current code would try to kill the main
  thread when control-c was pressed.

New features:
- Accept a `cancel_callback` in `ProgressBar` to specify the cancellation
  behavior for when `control-c` is pressed.
- Small performance improvement in the renderer.

(adam)

2022-11-09 08:52:11 UTC MAIN commitmail json YAML

Updated security/py-certifi, devel/py-aiosignal

(adam)

2022-11-09 08:51:49 UTC MAIN commitmail json YAML

py-aiosignal: updated to 1.3.1

1.3.1 (2022-11-08)
==================

Bugfixes
--------
- Removed stray quote and comma from setup.cfg preventing PyPI from accepting a
  release.

1.3.0 (2022-11-08)
==================

Features
--------
- Switched to declarative package setup.
- Added support for Python 3.11.

Deprecations and Removals
-------------------------
- Dropped Python 3.6 support.

(adam)

2022-11-09 08:47:09 UTC MAIN commitmail json YAML

py-geventhttpclient: mark as not for Python 2.7 because of py-certifi

(adam)

2022-11-09 08:46:26 UTC MAIN commitmail json YAML

2022-11-09 08:38:31 UTC MAIN commitmail json YAML

Updated security/py-acme, security/py-certbot*

(adam)

2022-11-09 08:37:26 UTC MAIN commitmail json YAML

2022-11-09 08:25:17 UTC MAIN commitmail json YAML

net/Makefile: +tut

(sjmulder)

2022-11-09 08:22:43 UTC MAIN commitmail json YAML

net/tut: Import tut-1.0.17 from wip

Text-based interface for Mastodon with vim-inspired keybindings and
support for shellout for editing text or viewing media.

(sjmulder)

2022-11-09 07:58:46 UTC MAIN commitmail json YAML

Updated comms/py-colorama, devel/py-frozenlist

(adam)

2022-11-09 07:58:30 UTC MAIN commitmail json YAML

py-frozenlist: updated to 1.3.3

1.3.3 (2022-11-08)
==================
- Fixed CI runs when creating a new release, where new towncrier versions
  fail when the current version section is already present.

1.3.2 (2022-11-08)
==================

Misc
----
- Updated the CI runs to better check for test results and to avoid deprecated syntax.

(adam)

2022-11-09 07:56:56 UTC MAIN commitmail json YAML

py-colorama: revert DESCR

(adam)

2022-11-09 07:55:44 UTC MAIN commitmail json YAML

py-colorama: updated to 0.4.6

0.4.6 Current release
* https://github.com/tartley/colorama/pull/139 Add alternative to 'init()',
  called 'just_fix_windows_console'. This fixes many longstanding problems
  with 'init', such as working incorrectly on modern Windows terminals, and
  wonkiness when init gets called multiple times. The intention is that it
  just makes all Windows terminals treat ANSI the same way as other terminals
  do. Many thanks the njsmith for fixing our messes.
* https://github.com/tartley/colorama/pull/352 Support Windows 10's ANSI/VT
  console. This didn't exist when Colorama was created, and avoiding us
  causing havok there is long overdue. Thanks to segeviner for the initial
  approach, and to njsmith for getting it merged.
* https://github.com/tartley/colorama/pull/338 Internal overhaul of package
  metadata declaration, which abolishes our use of the now heavily
  discouraged setuptools (and hence setup.py, setup.cfg and MANIFEST.in), in
  favor of hatchling (and hence pyproject.toml), generously contributed by
  ofek (author of hatchling). This includes dropping support Python3.5 and
  3.6, which are EOL, and were already dropped from setuptools, so this
  should not affect our users.
* https://github.com/tartley/colorama/pull/353 Attention to detail award to
  LqdBcnAtWork for a spelling fix in demo06

(adam)

2022-11-09 07:54:20 UTC MAIN commitmail json YAML

py-build: use correct dependencies

(adam)

2022-11-09 04:28:37 UTC MAIN commitmail json YAML

2022-11-09 00:42:33 UTC MAIN commitmail json YAML

doc: Updated sysutils/intel-microcode-netbsd to 20221108.

(msaitoh)

2022-11-09 00:39:27 UTC MAIN commitmail json YAML

intel-microcode-netbsd: Update intel-microcode-netbsd to 20221108.

### Purpose

- Update for functional issues.
  Refer to Intel(R) Xeon(R) D-2700 Processor Family Specification Update
  Refer to 13th Generation Intel(R) Core(TM) Processor Specification Update
  Refer to 12th Generation Intel(R) Core(TM) Processor Specification Update
  Refer to 11th Generation Intel(R) Core(TM) Processor Specification Update
  Refer to 10th Generation Intel(R) Core(TM) Processor Specification Update
  Refer to 8th and 9th Generation Intel(R) Core(TM) Processor Family Specification Update
  Refer to 8th Generation Intel(R) Core(TM) Processor Specification Update

### New Platforms

| Processor      | Stepping | F-M-S/PI    | Old Ver  | New Ver  | Products
|:---------------|:---------|:------------|:---------|:---------|:---------
| ICL-D          | B0      | 06-6c-01/10 |          | 01000201 | Xeon D-17xx, D-27xx
| RPL-S          | S0      | 06-b7-01/32 |          | 0000010e | Core Gen13

### Updated Platforms

| Processor      | Stepping | F-M-S/PI    | Old Ver  | New Ver  | Products
|:---------------|:---------|:------------|:---------|:---------|:---------
| ICL-U/Y        | D1      | 06-7e-05/80 | 000000b2 | 000000b6 | Core Gen10 Mobile
| TGL            | B1      | 06-8c-01/80 | 000000a4 | 000000a6 | Core Gen11 Mobile
| TGL-H          | R0      | 06-8d-01/c2 | 00000040 | 00000042 | Core Gen11 Mobile
| AML-Y42        | V0      | 06-8e-0c/94 | 000000f0 | 000000f4 | Core Gen10 Mobile
| CML-Y42        | V0      | 06-8e-0c/94 | 000000f0 | 000000f4 | Core Gen10 Mobile
| WHL-U          | V0      | 06-8e-0c/94 | 000000f0 | 000000f4 | Core Gen8 Mobile
| EHL            | B1      | 06-96-01/01 | 00000016 | 00000017 | Pentium J6426/N6415, Celeron J6412/J6413/N6210/N6211, Atom x6000E
| ADL            | C0      | 06-97-02/07 | 00000022 | 00000026 | Core Gen12
| ADL            | C0      | 06-97-05/07 | 00000022 | 00000026 | Core Gen12
| ADL            | L0      | 06-9a-03/80 | 00000421 | 00000424 | Core Gen12
| ADL            | L0      | 06-9a-04/80 | 00000421 | 00000424 | Core Gen12
| CFL-H          | R0      | 06-9e-0d/22 | 000000f0 | 000000f4 | Core Gen9 Mobile
| CML-H          | R1      | 06-a5-02/20 | 000000f0 | 000000f4 | Core Gen10 Mobile
| CML-S62        | G1      | 06-a5-03/22 | 000000f0 | 000000f4 | Core Gen10
| CML-S102      | Q0      | 06-a5-05/22 | 000000f0 | 000000f4 | Core Gen10
| CML-U62 V1    | A0      | 06-a6-00/80 | 000000f0 | 000000f4 | Core Gen10 Mobile
| CML-U62 V2    | K1      | 06-a6-01/80 | 000000f0 | 000000f4 | Core Gen10 Mobile
| RKL-S          | B0      | 06-a7-01/02 | 00000054 | 00000056 | Core Gen11
| ADL            | C0      | 06-bf-02/07 | 00000022 | 00000026 | Core Gen12
| ADL            | C0      | 06-bf-05/07 | 00000022 | 00000026 | Core Gen12

### Removed Platforms

None

(msaitoh)

2022-11-08 16:59:14 UTC MAIN commitmail json YAML

doc: Updated net/sayaka to 3.5.4

(tsutsui)

2022-11-08 16:58:59 UTC MAIN commitmail json YAML

sayaka: update to 3.5.4.

Upstream changes:

* 3.5.4 (2022/11/08)
- implement --force-sixel option
- fix printf bug when --progress is specified

(tsutsui)

2022-11-08 16:40:50 UTC MAIN commitmail json YAML

Note bash 5.2.9 update

(kre)

2022-11-08 16:39:49 UTC MAIN commitmail json YAML

Updated to bash 5.2 patch 9 (5.2.9) (from 5.2.2)

The patches fix the following bugs:

Patch 3:
Command substitutions need to preserve newlines instead of replacing
them with semicolons
Patch 4:
Bash needs to keep better track of nested brace expansions to
avoid problems with quoting and POSIX semantics.
Patch 5:
Null pattern substitution replacement strings can cause a crash
Patch 6:
In interactive shells, interrupting the shell while entering a command
substitution can inhibit alias expansion.
Patch 7:
Several problems with alias expansion inside command
substitutions when in POSIX mode
Patch 8:
Array subscript expansion can inappropriately quote brackets
if the expression contains < or >.
Patch 9:
Bash arithmetic expansion should allow `@' and `*' to be used
as associative array keys in expressions.

(kre)

2022-11-08 15:30:47 UTC MAIN commitmail json YAML

net/icingaweb2: update HOMEPAGE

(taca)

2022-11-08 15:29:36 UTC MAIN commitmail json YAML

doc: Updated devel/php-igbinary to 3.2.11

(taca)

2022-11-08 15:29:12 UTC MAIN commitmail json YAML

devel/php-igbinary: update to 3.2.11

3.2.7 (2022-01-12)

* Update test expectations for php 8.2.0-dev.  Add
  `#[AllowDynamicProperties]` Attribute to some tests to avoid notices.

* In php 8.1+, make igbinary_unserialize check to see if an equivalent
  interned string already exists when unserializing object property names,
  array keys, and class names and use that instead of creating a brand new
  string.
  (This deliberately doesn't create a new interned string if one doesn't
  already exist.)
  (Before this change, igbinary would deduplicate strings when serializing,
  but would not check if strings were interned by PHP itself when
  unserializing)

* Avoid debug build assertion failure for `HT_ASSERT_RC1` the same way as
  PHP's unserialize - this is a case where ostensibly there are no other
  references to the array being unserialized.

3.2.8 (2022-10-17)

* Reduce excessive inlining to reduce shared library size.

* Miscellaneous optimizations.

* Update test expectations to handle changes to var_export output (fully
  qualified class names) in PHP 8.2.

* Throw an Error when igbinary_unserialize would add dynamic properties to
  class definitions that forbid them in PHP 8.0+
  (especially PHP 8.2 `readonly` classes)

* Emit a deprecation notice when igbinary_unserialize() adds dynamic
  properties to a class without `#[AllowDynamicProperties]` in PHP 8.2.
  Doing that would become an Error in PHP 9.0.

* Set up CI job to build dlls on https://github.com/igbinary/igbinary - at
  the moment, the infrastructure used by the Windows for php team has been
  broken for months.

3.2.9 (2022-10-17)

* Fix invalid release artifact name in job to build dlls for
  https://github.com/igbinary/igbinary

3.2.10 (2022-11-06)

* Add a macro that callers can use to check if igbinary will accept the
  header for data being unserialized.

* Fix bug preventing the unserialization of data containing representations
  of strings larger than 4GB.

3.2.11 (2022-11-06)

* Fix a bug that could prevent objects/arrays with reference cycles from
  being properly garbage collected.

* Fix bugs in unserializing PHP references to values found in php 7.4 typed
  properties (#363)

(taca)

2022-11-08 14:18:27 UTC MAIN commitmail json YAML

Rewrite versioned Python dependency handling to deal with more than just
py27 vs py3.

(joerg)

2022-11-08 13:50:21 UTC MAIN commitmail json YAML

Updated devel/py-coverage, devel/py-test-cov

(adam)

2022-11-08 13:50:05 UTC MAIN commitmail json YAML

py-test-cov: updated to 4.0.0

4.0.0 (2022-09-28)
------------------

**Note that this release drops support for multiprocessing.**

* `--cov-fail-under` no longer causes `pytest --collect-only` to fail
* Dropped support for multiprocessing (mostly because `issue 82408 <https://github.com/python/cpython/issues/82408>`_). This feature was
  mostly working but very broken in certain scenarios and made the test suite very flaky and slow.

  There is builtin multiprocessing support in coverage and you can migrate to that. All you need is this in your
  ``.coveragerc``::

    [run]
    concurrency = multiprocessing
    parallel = true
    sigterm = true
* Fixed deprecation in ``setup.py`` by trying to import setuptools before distutils.
* Removed undesirable new lines that were displayed while reporting was disabled.
* Documentation fixes.
* Added support for LCOV output format via `--cov-report=lcov`. Only works with coverage 6.3+.
* Modernized pytest hook implementation.

(adam)

2022-11-08 13:39:17 UTC MAIN commitmail json YAML

py-coverage: updated to 6.5.0

Version 6.5.0 — 2022-09-29
--------------------------

- The JSON report now includes details of which branches were taken, and which
  are missing for each file. Thanks, Christoph Blessing (`pull 1438`_). Closes
  `issue 1425`_.

- Starting with coverage.py 6.2, ``class`` statements were marked as a branch.
  This wasn't right, and has been reverted, fixing `issue 1449`_. Note this
  will very slightly reduce your coverage total if you are measuring branch
  coverage.

- Packaging is now compliant with `PEP 517`_, closing `issue 1395`_.

- A new debug option ``--debug=pathmap`` shows details of the remapping of
  paths that happens during combine due to the ``[paths]`` setting.

- Fix an internal problem with caching of invalid Python parsing. Found by
  OSS-Fuzz, fixing their `bug 50381`_.

.. _bug 50381: https://bugs.chromium.org/p/oss-fuzz/issues/detail?id=50381
.. _PEP 517: https://peps.python.org/pep-0517/
.. _issue 1395: https://github.com/nedbat/coveragepy/issues/1395
.. _issue 1425: https://github.com/nedbat/coveragepy/issues/1425
.. _pull 1438: https://github.com/nedbat/coveragepy/pull/1438
.. _issue 1449: https://github.com/nedbat/coveragepy/issues/1449

(adam)

2022-11-08 13:01:15 UTC MAIN commitmail json YAML

Updated textproc/pugixml

(adam)

2022-11-08 12:56:38 UTC MAIN commitmail json YAML

pugixml: updated to 1.13

v1.13 2022-11-01
Maintenance release. Changes:

Improvements:

xml_attribute::set_value, xml_node::set_value and xml_text::set now have overloads that accept pointer to non-null-terminated string and size
Improve performance of tree traversal when using compact mode (PUGIXML_COMPACT)

Bug fixes:

Fix error handling in xml_document::save_file that could result in the function succeeding while running out of disk space
Fix memory leak during error handling of some out-of-memory conditions during xml_document::load

Compatibility improvements:

Fix exported symbols in CMake DLL builds when using CMake
Fix exported symbols in CMake shared object builds when using -fvisibility=hidden

(adam)

2022-11-08 12:50:57 UTC MAIN commitmail json YAML

Updated databases/slony1, devel/py-setuptools

(adam)

2022-11-08 12:50:33 UTC MAIN commitmail json YAML

py-setuptools: updated to 65.5.1

v65.5.1

Misc
Drop a test dependency on the mock package, always use unittest.mock
Fixed REDoS vector in package_index.

(adam)

2022-11-08 12:47:01 UTC MAIN commitmail json YAML

clisp: fix module linking with X11_TYPE = native on NetBSD

X11 pkg-config files on NetBSD includes -Wl,-rpath,/usr/X11R7/lib
that can't be understood by the ld command, so use the compiler
that can understand this for linking instead.
Fixes build of x11/clisp-gtk2 with X11_TYPE = native and cwrappers.
Concerns PR pkg/57077 .

(nros)

2022-11-08 12:44:56 UTC MAIN commitmail json YAML

slony1: updated to 2.2.11

2.2.11
- Add support for PG 15
- Remove standard_conforming_strings autoconf check
- Fix typo in admin guide

(adam)

2022-11-08 12:10:18 UTC MAIN commitmail json YAML

2022-11-08 12:00:52 UTC MAIN commitmail json YAML

doc: Updated devel/orc to 0.4.33

(wiz)

2022-11-08 12:00:42 UTC MAIN commitmail json YAML

orc: update to 0.4.33.

0.4.33
======

  - Add support for aarch64 (64-bit ARM) architecture (not yet enabled on Windows though)
    (Marek Vasut, Dongju Chae, Gaetan Bahl)
  - aarch32: Implement loadupdb instruction used e.g. for video pixel
    format packing/unpacking/conversions (Marek Vasut, Gaetan Bahl)
  - neon: Fix unsigned only implementation of loadoffb, loadoffw and loadoffl
    (Daniel Knobe)
  - neon: Fix testsuite not passing on arm CPUs (Gaetan Bahl)
  - orccodemem: Fix use-after-free in error paths (Bastien Nocera)
  - orccpu-powerpc: Fix build with kernel < 4.11 (Fabrice Fontaine)
  - Add support for macOS Hardened Runtime (Doug Nazar)
  - Enable only SSE and MMX backends for Windows (Seungha Yang)
  - Fix ORC_RESTRICT definition for MSVC (Tim-Philipp M端ller)
  - pkgconfig: add -DORC_STATIC_COMPILATION flag to .pc file for static-only builds
    (Steve Lhomme)

(wiz)

2022-11-08 11:54:05 UTC MAIN commitmail json YAML

Updated biology/py-pydicom, devel/py-pip

(adam)

2022-11-08 11:53:49 UTC MAIN commitmail json YAML

py-pip: updated to 22.3.1

22.3.1 (2022-11-05)
===================

Bug Fixes
---------

- Fix entry point generation of ``pip.X``, ``pipX.Y``, and ``easy_install-X.Y``
  to correctly account for multi-digit Python version segments (e.g. the "11"
  part of 3.11).

(adam)

2022-11-08 11:51:41 UTC MAIN commitmail json YAML

py-pydicom: updated to 2.3.0

Version 2.3.0
=================================

Changes
-------
* :meth:`DataElement.description<pydicom.dataelem.DataElement.description>` is
  deprecated and will be removed in v3.0, use
  :attr:`DataElement.name<pydicom.dataelem.DataElement.name>` instead
* Updated the private dictionary
* :attr:`~pydicom.config.enforce_valid_values` is deprecated in favor of
  :attr:`~pydicom.config.settings.reading_validation_mode`
* Added `download` parameter to :func:`~pydicom.data.get_testdata_file`
  to allow skipping downloading the file if missed locally (:pr:`1617`)

Enhancements
------------
* Values are now validated for valid length, allowed character set and format
  on reading and writing. Depending on the value of
  :attr:`~pydicom.config.settings.reading_validation_mode`
  and :attr:`~pydicom.config.settings.writing_validation_mode`
  a warning is logged, an exception is raised, or the validation is skipped.
* Added :class:`~pydicom.valuerep.VR` enum (:pr:`1500`)
* UIDs for all Storage SOP Classes have been added to the ``uid`` module
  (:issue:`1498`)
* Use rle_handler as last resort handler for decoding RLE encoded data as it is
  the slowest handler (:issue:`1487`)
* Added, enhanced, or removed a number of Mitra private dictionary entries (:pr:`1588`)
* Added support for unpacking bit-packed data without using NumPy to
  :func:`~pydicom.pixel_data_handlers.utils.unpack_bits`(:pr:`1594`)
* Added :func:`~pydicom.pixel_data_handlers.util.expand_ybr422` for expanding
  uncompressed ``YBR_FULL_422`` data to ``YBR_FULL`` (:pr:`1593`)
* Replacement of ``UN`` VR with ``SQ`` VR for undefined length data elements
  (introduced in 2.2.2), can now be configured via
  :attr:`~pydicom.config.settings.infer_sq_for_un_vr`
* Updated dictionaries to DICOM 2022a

Fixes
-----
* Fixed odd-length **OB** values not being padded during write (:issue:`1511`)
* Fixed Hologic private dictionary entry (0019xx43)
* Fixed Mitra global patient ID private dictionary entry (:pr:`1588`)
* Fixed :meth:`~pydicom.dataset.Dataset.compress` not setting the correct
  encoding for the rest of the dataset (:issue:`1565`)
* Fixed `AttributeError` on deep copy of :class:`~pydicom.dataset.FileDataset`
  (:issue:`1571`)
* Fixed an exception during pixel decoding if using GDCM < 2.8.8 on Windows
  (:issue:`1581`)
* Fixed crashes on Windows and MacOS when using the GDCM plugin to compress
  into *RLE Lossless* (:issue:`1581`)
* Fixed ``dir(Dataset())`` not returning class attributes (:issue:`1599`)
* Fixed bad DICOMDIR offsets when using :meth:`FileSet.write()
  <pydicom.fileset.FileSet.write>` with a *Directory Record Sequence* using
  undefined length items (:issue:`1596`)
* Assigning a list of length one as tag value is now correctly handled as
  assigning the single value (:issue:`1606`)
* Fixed an exception with multiple deferred reads with file-like objects
  (:issue:`1609`)

(adam)

2022-11-08 11:44:16 UTC MAIN commitmail json YAML

Updated devel/py-xopen, databases/py-asyncpg

(adam)

2022-11-08 11:43:59 UTC MAIN commitmail json YAML

py-asyncpg: updated to 0.27.0

v0.27.0

Support Python 3.11 and PostgreSQL 15. This release also drops support
for Python 3.6.

Changes

Add arm64 mac and linux wheels
Add Python 3.11 to the test matrix
Exclude .venv from flake8
Upgrade to flake8 5.0.4 (from 3.9.2)
Show an example of a custom Record class
Use the exact type name in Record.repr
Drop Python 3.6 support
Test on Python 3.11 and PostgreSQL 15, fix workflow deprecations

(adam)

2022-11-08 11:36:20 UTC MAIN commitmail json YAML

py-xopen: updated to 1.7.0

1.7.0:
Unknown changes

(adam)

2022-11-08 09:30:08 UTC MAIN commitmail json YAML

Removed devel/py-typed-ast; comms/py-enrich

(adam)

2022-11-08 09:29:50 UTC MAIN commitmail json YAML

2022-11-08 09:27:08 UTC MAIN commitmail json YAML

2022-11-08 09:07:10 UTC MAIN commitmail json YAML

py-astroid: no need to depend on py-typed-ast anymore

(adam)

2022-11-08 09:05:49 UTC MAIN commitmail json YAML

py-black: no need to depend on py-typed-ast anymore

(adam)

2022-11-08 09:04:48 UTC MAIN commitmail json YAML

Updated sysutils/py-psutil, devel/py-immutabledict, lang/py-mypy, devel/py-faker

(adam)

2022-11-08 09:04:22 UTC MAIN commitmail json YAML

py-faker: updated to 15.3.1

v15.3.1

* Update the `word_list` for `pl_PL`.

v15.3.0

* Add color provider for `id_ID`.

v15.2.0

* Add banks for `en_IN` locale.

v15.1.5

* Fix type variable inside the `ElementsType`.

v15.1.4

* Remove test dependency on `random2`.

v15.1.3

*  Fix pyfloat causing ValueError.

v15.1.2

* Fix missing return in `en_US` `state_abbr`.

v15.1.1

* Fix ImportError on python <3.7.2.

v15.1.0

* Add enum provider.

v15.0.0

* Add support for Python 3.10.
* Drop support for Python 3.6.

v14.2.1

* Fix misspelled first name in `da_DK` locale.

(adam)

2022-11-08 08:57:44 UTC MAIN commitmail json YAML

py-mypy: updated to 0.990

v0.990
Remove +dev from version

(adam)

2022-11-08 08:52:48 UTC MAIN commitmail json YAML

py-immutabledict: updated to 2.2.3

Version 2.2.3

Fix TypeError message when using |=.
Update docstring for ImmutableOrderedDict to indicate that is not needed anymore for Python >= 3.7 but kept for compatibility purposes
Use postponed evaluation of annotations (PEP 563) for the typing

Version 2.2.2

Update classifiers, Github Actions... for Python 3.11 (no code changes)

(adam)

2022-11-08 08:50:20 UTC MAIN commitmail json YAML

py-psutil: updated to 5.9.4

5.9.4
=====

2022-11-07

**Enhancements**

- 2102_: use Limited API when building wheels with CPython 3.6+ on Linux,
  macOS and Windows. This allows to use pre-built wheels in all future versions
  of cPython 3.  (patch by Matthieu Darbois)

**Bug fixes**

- 2077_, [Windows]: Use system-level values for `virtual_memory()`_. (patch by
  Daniel Widdis)
- 2156_, [Linux]: compilation may fail on very old gcc compilers due to missing
  ``SPEED_UNKNOWN`` definition.  (patch by Amir Rossert)
- 2010_, [macOS]: on MacOS, arm64 ``IFM_1000_TX`` and ``IFM_1000_T`` are the
  same value, causing a build failure.  (patch by Lawrence D'Anna)

(adam)

2022-11-08 01:08:13 UTC MAIN commitmail json YAML

doc: Updated net/unison to 2.53.0

(gdt)

2022-11-08 01:07:09 UTC MAIN commitmail json YAML

net/unison: Update to 2.53.0

Change to lablgkt3.
Drop MAKE_JOBS_SAFE because the issue was fixed upstream.

## Changes in 2.53.0

Released 2022-11-07

  * OCaml >= 4.08 is required to build unison.
  * unison can be built with (unreleased) OCaml 5.
  * Change GUI to use GTK3 (via lablgtk3) instead of GTK2 (via lablgtk2)
  * Add support for syncing extended attributes.
  * Add support for syncing ACLs.
  * On Windows, add the ability to build unison as a hybrid
    application (GUI application attached to a text console) by
    defining UI_WINOS=hybrid (see src/Makefile).  Add this to CI.
    (Doing this for non-Windows is unnecessary as all applications,
    both GUI and non-GUI, are always executed with a connection to
    stdout/stderr. GUI-only applications (ie, no stdout/stderr) is a
    Windows-only concept.)
  * Notable bugfixes
    - Merge results are stored in archive more accurately.
    - Windows `\\?\` paths now work correctly (including `\\?\Volume{GUID}\` paths).
  * CI changes
    - The macOS binaries are properly signed.
    - Add workaround for bugs in the github CI Windows builds, one of
      which resulted in the 2.52.1 GUI version failing, in the Windows
      CI build artifacts.  (This does not affect platforms other than
      Windows, and may not affect other Windows builds.)
  * Changes that should not affect behavior
    - Clean up a variety of unmaintained and unused bits, mainly
      build-related.
    - OCaml's Unix library is now extensively used also on
      Windows. This allowed removal of large amount of
      Windows-specific OCaml and mainly C code.

(gdt)

2022-11-08 00:36:57 UTC MAIN commitmail json YAML

seamonkey: update Python 3 tool dependency

(gutteridge)

2022-11-08 00:35:14 UTC MAIN commitmail json YAML

thunderbird68: update Python 3 tool dependency

(gutteridge)

2022-11-07 22:38:17 UTC MAIN commitmail json YAML

doc: Updated devel/patchelf to 0.17.0

(fcambus)

2022-11-07 22:38:02 UTC MAIN commitmail json YAML

patchelf: update to 0.17.0.

- fix pagesize on ia64
- write out replace sections in original order
- patchelf: correct page size for sparc64/sparc32
- update vendored elf file
- add workaround for readelf from binutils 2.30
- make objdump/objcopy/readelf configurable and respect cross-compiling

(fcambus)

2022-11-07 17:37:06 UTC pkgsrc-2022Q3 commitmail json YAML

Pullup ticket #6701 - requested by taca
lang/php74: security fix

Revisions pulled up:
- lang/php/phpversion.mk                                        1.380
- lang/php56/Makefile                                          1.30
- lang/php74/Makefile                                          1.17
- lang/php74/distinfo                                          1.39
- lang/php80/Makefile                                          1.10
- lang/php81/Makefile                                          1.8

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Sun Oct 30 10:50:01 UTC 2022

  Modified Files:
  pkgsrc/lang/php56: Makefile
  pkgsrc/lang/php74: Makefile
  pkgsrc/lang/php80: Makefile
  pkgsrc/lang/php81: Makefile

  Log Message:
  lang/php: post-install clean up

  Do not manually install executable files and manual.
  These are already done by php's Makefile from some time ago.

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Fri Nov  4 00:40:58 UTC 2022

  Modified Files:
  pkgsrc/lang/php: phpversion.mk
  pkgsrc/lang/php74: distinfo

  Log Message:
  lang/php74: update to 7.4.33

  7.4.33 (2022-11-03)

  - GD:
    . Fixed bug #81739: OOB read due to insufficient input validation in
      imageloadfont(). (CVE-2022-31630) (cmb)

  - Hash:
    . Fixed bug #81738: buffer overflow in hash_update() on long parameter.
      (CVE-2022-37454) (nicky at mouha dot be)

(bsiegert)

2022-11-07 14:27:15 UTC MAIN commitmail json YAML

doc: Updated security/sudo to 1.9.12p1

(taca)

2022-11-07 14:26:57 UTC MAIN commitmail json YAML

security/sudo: update to 1.9.12p1

1.9.12p1 (2022-11-07)

What's new in Sudo 1.9.12p1

* Sudo's configure script now does a better job of detecting when
  the -fstack-clash-protection compiler option does not work.
  GitHub issue #191.

* Fixed CVE-2022-43995, a potential out-of-bounds write for passwords
  smaller than 8 characters when passwd authentication is enabled.
  This does not affect configurations that use other authentication
  methods such as PAM, AIX authentication or BSD authentication.

* Fixed a build error with some configurations compiling host_port.c.

(taca)

2022-11-07 10:44:09 UTC MAIN commitmail json YAML

Updated textproc/utf8-cpp, devel/py-jaraco.collections

(adam)

2022-11-07 10:43:53 UTC MAIN commitmail json YAML

py-jaraco.collections: updated to 3.8.0

v3.8.0
======
Made ``DictStack`` mutable.

(adam)

2022-11-07 10:19:27 UTC MAIN commitmail json YAML

utf8-cpp: updated to 3.2.2

v3.2.2
Minor changes that eliminate some conversion warnings in some cases.

(adam)

2022-11-07 01:02:09 UTC MAIN commitmail json YAML

firefox52: adjust outdated comments

(gutteridge)

2022-11-07 00:55:15 UTC MAIN commitmail json YAML

thunderbird: remove 37 from PYTHON_VERSIONS_ACCEPTED

(gutteridge)

2022-11-06 23:26:58 UTC MAIN commitmail json YAML

devel/backports.cached-property-1.0.1: Drop 37

as this depends on things that no longer exist.
It should be removed, but this should fix the bulk scan failure.

(gdt)

2022-11-06 23:10:07 UTC MAIN commitmail json YAML

devel/Makefile: comment out py-backports.cached-property

python 3.7 only and the packages it depends upon by default
do not build 3.7 versions any longer

(wiz)

2022-11-06 23:01:44 UTC MAIN commitmail json YAML

biology/Makefile: Add gffread

(bacon)

2022-11-06 23:01:27 UTC MAIN commitmail json YAML

doc: Added biology/gffread version 0.12.7

(bacon)

2022-11-06 23:01:18 UTC MAIN commitmail json YAML

biology/gffread: GFF/GTF format conversions, filtering, etc

GFF/GTF utility providing format conversions, filtering, FASTA sequence
extraction and more.  The program gffread can be used to validate,
filter, convert and perform various other operations on GFF files.
Because the program shares the same GFF parser code with Cufflinks,
Stringtie, and gffcompare, it could be used to verify that a GFF file
from a certain annotation source is correctly "understood" by these
programs.

(bacon)

2022-11-06 22:50:02 UTC MAIN commitmail json YAML

biology/Makefile: Add fastq-trim

(bacon)

2022-11-06 22:49:47 UTC MAIN commitmail json YAML

doc: Added biology/fastq-trim version 0.1.1.16

(bacon)

2022-11-06 22:49:37 UTC MAIN commitmail json YAML

biology/fastq-trim: Lightening fast sequence read trimmer

Fastq-trim is a lightening fast read trimming tool for QA of DNA and RNA reads
prior to analyses such as RNA-Seq.  it runs in a fraction of the time required
by popular trimmers and uses only a few megabytes of RAM, so it will run
almost entirely in cache.  The design supports adding any number of alignment
functions, so it can be easily adapted to any trimming needs.

(bacon)

2022-11-06 21:32:24 UTC MAIN commitmail json YAML

doc: Updated emulators/dosbox-x to 0.84.3

(triaxx)

2022-11-06 21:31:57 UTC MAIN commitmail json YAML

2022-11-06 20:58:19 UTC MAIN commitmail json YAML

doc: Updated shells/zsh to 5.9nb2

(wiz)

2022-11-06 20:58:00 UTC MAIN commitmail json YAML

zsh: add candidate upstream patch for bg/fg issue with shell functions

Bump PKGREVISION.

(wiz)

2022-11-06 18:46:14 UTC MAIN commitmail json YAML

Updated devel/py-jaraco.itertools, www/py-websockets

(adam)

2022-11-06 18:45:53 UTC MAIN commitmail json YAML

py-websockets: updated to 10.4

10.4

New features

Validated compatibility with Python 3.11.
Added the latency property to protocols.
Changed ping to return the latency of the connection.
Supported overriding or removing the User-Agent header in clients and the Server header in servers.
Added deployment guides for more Platform as a Service providers.

Improvements

Improved FAQ.

(adam)

2022-11-06 18:43:30 UTC MAIN commitmail json YAML

py-jaraco.itertools: updated to 6.2.1

v6.2.1
======
Fixed broken test in ``ensure_unique``.

v6.2.0
======
Added ``accumulate`` function.

v6.1.1
======
Fixed typo in ``ensure_unique`` doctest.

v6.1.0
======
Add ``ensure_unique`` function.

v6.0.3
======
Fixed doc build errors.

v6.0.2
======
Minor fixes.

v6.0.1
======
Switch to PEP 420 for namespace package.

v6.0.0
======
Remove ``Counter.GetCount``.
Remove ``flatten`` and ``iflatten``.

(adam)

2022-11-06 18:36:01 UTC MAIN commitmail json YAML

Added devel/py-jaraco.collections; Updated time/py-tempora, net/py-portend, www/py-cheroot, www/py-cherrypy, www/py-webpy

(adam)

2022-11-06 18:34:58 UTC MAIN commitmail json YAML

py-webpy: updated to 0.62

0.62

* Fixed: application.load() assumes ctx.path will be a latin1 string
* Fixed: can not reset session data to same value as initialized.
* Fixed: can not set session expire time.
* Fixed: not export session store `MemoryStore`.

0.61

* setup.py: Add python_requires='>=3.5'

0.60

* Python-2 support has been completely dropped. Welcome to Python 3.
* Fixed: session store `DiskStore` doesn't return correctly if session
  directory doesn't exist.
* Fixed: incorrect str/bytes type of session data.
* Fixed: `db.query("insert... returning")` fails to commit.

(adam)

2022-11-06 18:29:10 UTC MAIN commitmail json YAML

py-cherrypy: updated to 18.8.0

v18.8.0
-------

* :issue:`1974`: Dangerous characters received in a host header
  encoded using RFC 2047 are now elided by default. Currently,
  dangerous characters are defined as CR and LF. The original
  value is still available as ``cherrypy.request.headers['Host'].raw``
  if needed.

v18.7.0
-------

* :pr:`1923`: Drop support for Python 3.5.
* :pr:`1945`: Fixed compatibility on Python 3.11.

v18.6.1
-------

* :issue:`1849` via :pr:`1879`: Fixed XLF flag in gzip header
  emitted by gzip compression tool per
  :rfc:`1952#section-2.3.1` -- by :user:`webknjaz`.

* :issue:`1874`: Restricted depending on pywin32 only under
  CPython so that it won't get pulled-in under PyPy
  -- by :user:`webknjaz`.

* :issue:`1920`: Bumped minimum version of PyWin32 to 227.
  Block pywin32 install on Python 3.10 and later.

v18.6.0
-------

* :issue:`1776` via :pr:`1851`: Add support for UTF-8 encoded attachment
  file names in ``Content-Disposition`` header via :rfc:`6266#appendix-D`.

v18.5.0
-------

* :issue:`1827`: Fixed issue where bytes values in a ``HeaderMap``
  would be converted to strings.

* :pr:`1826`: Rely on
  `jaraco.collections <https://pypi.org/project/jaraco.collections>`_
  for its case-insensitive dictionary support.

v18.4.0
-------

* :pr:`1715`: Fixed issue in cpstats where the ``data/`` endpoint
  would fail with encoding errors on Python 3.

* :pr:`1821`: Simplify the passthrough of parameters to
  ``CPWebCase.getPage`` to cheroot. CherryPy now requires
  cheroot 8.2.1 or later.

(adam)

2022-11-06 18:24:45 UTC MAIN commitmail json YAML

2022-11-06 18:21:11 UTC MAIN commitmail json YAML

py-cheroot: updated to 8.6.0

v8.6.0

Significant improvements:

- :issue:`384` via :pr:`385`, :pr:`406`: Exposed type stubs with
  annotations for public API -- by :user:`kasium`.

- :pr:`401` (related to the :pr:`352` effort): Started reusing the
  the ``expriration_interval`` setting in the low-level
  :py:func:`~select.select` invocation, effectively reducing the system
  load under the Windows OS when idle, that is noticeable on low-end
  hardware systems -- by :user:`MichaIng`.

Internal changes:

- Implemented a manual-trigger-based release workflow.
- Integrated publishing GitHub Releases into the workflow.
- Migrated the docs theme to `Furo <https://pradyunsg.me/furo>`__
  (created by :user:`pradyunsg`).
- Attempted to improve the stability of testing.
- Configured the CI to test the same distribution as will be shipped.
- Improved the linting setup and contributor checklists.
- Stopped running tests under Ubuntu 16.04.
- Tweaked the distribution packages metadata to satisfy strict checks.
- Implemented distribution build reproducibility using a pip constraints
  lock-file.
- Added per-environment lock-files into the tox test environments.

v8.5.2

- :issue:`358` via :pr:`359`: Fixed a regression from
  :pr:`199` that made the worker threads exit on invalid
  connection attempts and could make the whole server
  unresponsive once there was no workers left.
  -- by :user:`cameronbrunner`.

v8.5.1

- :cp-issue:`1873` via :pr:`340`: Resurrected an
  unintentionally removed feature of interrupting a server
  main thread by externally assigning an exception to the
  :py:meth:`HTTPServer.interrupt <cheroot.server.\
  HTTPServer.interrupt>` property -- by :user:`liamstask`.

- :pr:`350`: Fixed the incarnation of an earlier regression
  of not resetting the serving state
  on :py:data:`SIGINT` originally fixed by :pr:`322` and
  :pr:`331` but reintroduced by the changes in :pr:`311`
  -- by :user:`liamstask`.

v8.5.0

- :issue:`305` via :pr:`311`: In
  :py:class:`~cheroot.connections.ConnectionManager`,
  process connections as they become active rather than
  waiting for a ``tick`` event, addressing performance
  degradation introduced in v8.1.0 -- by :user:`liamstask`.

- :issue:`341` via :pr:`342`: Suppress legitimate OS errors
  expected on shutdown -- by :user:`webknjaz`.

v8.4.8

- :issue:`317` via :pr:`337`: Fixed a regression in
  8.4.5 where the connections dictionary would change
  size during iteration, leading to a :py:exc:`RuntimeError`
  raised in the logs -- by :user:`liamstask`.

v8.4.7

- :pr:`334`: Started filtering out TLS/SSL errors when
  the version requested by the client is unsupported
  -- by :user:`sanderjo` and :user:`Safihre`.

v8.4.6

- :issue:`328` via :pr:`322` and :pr:`331`: Fixed a
  regression introduced in the earlier refactoring in v8.4.4
  via :pr:`309` that caused the :py:meth:`~cheroot.server.\
  HTTPServer.serve` method to skip setting
  ``serving=False`` on :py:data:``SIGINT`` and
  :py:data:``SIGTERM`` -- by :user:`marc1n` and
  :user:`cristicbz`.

v8.4.5

- :issue:`312` via :pr:`313`: Fixed a regression introduced
  in the earlier refactoring in v8.4.4 via :pr:`309` that
  caused the connection manager to modify the selector map
  while looping over it -- by :user:`liamstask`.

- :issue:`312` via :pr:`316`: Added a regression test for
  the error handling in :py:meth:`~cheroot.connections.\
  ConnectionManager.get_conn` to ensure more stability
  -- by :user:`cyraxjoe`.

v8.4.4

- :issue:`304` via :pr:`309`: Refactored :py:class:`~\
  cheroot.connections.ConnectionManager` to use :py:meth:`~\
  selectors.BaseSelector.get_map` and reorganized the
  readable connection tracking -- by :user:`liamstask`.

- :issue:`304` via :pr:`309`: Fixed the server shutdown
  sequence to avoid race condition resulting in accepting
  new connections while it is being terminated
  -- by :user:`liamstask`.

v8.4.3

- :pr:`282`: Fixed a race condition happening when an HTTP
  client attempts to reuse a persistent HTTP connection after
  it's been discarded on the server in :py:class:`~cheroot.\
  server.HTTPRequest` but no TCP FIN packet has been received
  yet over the wire -- by :user:`meaksh`.

  This change populates the ``Keep-Alive`` header exposing
  the timeout value for persistent HTTP/1.1 connections which
  helps mitigate such race conditions by letting the client
  know not to reuse the connection after that time interval.

v8.4.2

- Fixed a significant performance regression introduced in
  v8.1.0 (:issue:`305` via :pr:`308`) - by :user:`mar10`.

  The issue turned out to add 0.1s delay on new incoming
  connection processing. We've lowered that delay to mitigate
  the problem short-term, better fix is yet to come.

v8.4.1

- Prevent :py:exc:`ConnectionAbortedError` traceback from being
  printed out to the terminal output during the app start-up on
  Windows when built-in TLS adapter is used (:issue:`302` via
  :pr:`306`) - by :user:`mxii-ca`.

v8.4.0

- Converted management from low-level :py:func:`~select.select` to
  high-level :py:mod:`selectors` (:issue:`249` via :pr:`301`)
  - by :user:`tommilligan`.

  This change also introduces a conditional dependency on
  ``selectors2`` as a fall-back for legacy Python interpreters.

v8.3.1

- Fixed TLS socket related unclosed resource warnings
  (:pr:`291` and :pr:`298`).
- Made terminating keep-alive connections more graceful
  (:issue:`263` via :pr:`277`).

v8.3.0

- :cp-issue:`910` via :pr:`243`: Provide TLS-related
  details via WSGI environment interface.
- :pr:`248`: Fix parsing of the ``--bind`` CLI option
  for abstract UNIX sockets.

(adam)

2022-11-06 18:19:52 UTC MAIN commitmail json YAML

py-portend: updated to 3.1.0

v3.1.0
======
Require Python 3.7 or later.

v3.0.0
======
Removed legacy aliases ``wait_for_occupied_port``
and ``wait_for_free_port``.

v2.7.2
======
Packaging refresh.

v2.7.1
======
Fix host/port order.

v2.7.0
======
Refresh package. Require Python 3.6 or later.

(adam)

2022-11-06 18:18:38 UTC MAIN commitmail json YAML

py-tempora: updated to 5.0.2

v5.0.2
======
- Refreshed project.
- Enrolled with Tidelift.

v5.0.1
======
- Refreshed project.

v5.0.0
======
- Removed deprecated ``divide_*`` functions and ``Parser``
  class.
- Require Python 3.7 or later.
- Fixed error reporting in parse_timedelta.

v4.1.2
======
- Docs now build without warnings.

v4.1.1
======
- Fixed issue where digits were picked up in the unit when
  adjacent to the last unit.

v4.1.0
======
- Added support for more formats in ``parse_timedelta``.
- ``parse_timedelta`` now supports formats emitted by
  ``timeit``, including honoring nanoseconds at the
  microsecond resolution.

v4.0.2
======
- Refreshed package metadata.

v4.0.1
======
- Refreshed package metadata.

v4.0.0
======
- Removed ``strptime`` function in favor of
  `datetime.datetime.strptime <https://docs.python.org/3/library/datetime.html#datetime.datetime.strptime>`_. If passing
  a ``tzinfo`` parameter, instead invoke `.replace(tzinfo=...)`
  on the result.
- Deprecated ``divide_timedelta`` and ``divide_timedelta_float``
  now that Python supports this functionality natively.
- Deprecated ``Parser`` class. The
  `dateutil.parser <https://dateutil.readthedocs.io/en/stable/parser.html>`_
  provides more sophistication.

(adam)

2022-11-06 18:17:12 UTC MAIN commitmail json YAML

Updated lang/py-inflect, devel/py-jaraco.functools; Added devel/py-jaraco.context, textproc/py-jaraco.text

(adam)

2022-11-06 18:16:40 UTC MAIN commitmail json YAML

py-jaraco.functools: updated to 3.5.2

v3.5.2
======
Refreshed packaging.

v3.5.1
======
Packaging refresh.
Enrolled with Tidelift.

v3.5.0
======
* Add type annotations to ``method_cache``.
* Require Python 3.7.

v3.4.0
======
``apply`` now uses ``functools.wraps`` to ensure docstring
passthrough.

v3.3.0
======
In method_cache, support cache_clear before cache
is initialized.

v3.2.1
======
Refreshed package metadata.

v3.2.0
======
Switched to PEP 420 for ``jaraco`` namespace.

v3.1.0
======
Added ``except_`` decorator.

v3.0.1
======
Removed unnecessary compatibility libraries in testing.

v3.0.0
======
Require Python 3.6 or later.

(adam)

2022-11-06 18:14:38 UTC MAIN commitmail json YAML

py-jaraco.text: added version 3.10.0

This package provides handy routines for dealing with text, such as wrapping,
substitution, trimming, stripping, prefix and suffix removal, line
continuation, indentation, comment processing, identifier processing, values
parsing, case insensitive comparison, and more.

(adam)

2022-11-06 18:13:00 UTC MAIN commitmail json YAML

2022-11-06 18:08:15 UTC MAIN commitmail json YAML

py-inflect: updated to 6.0.2

v6.0.2
======
* Require pydantic 1.9.1 to avoid ``ValueError``.

v6.0.1
======
* Minor tweaks and packaging refresh.

v6.0.0
======
* ``compare`` methods now validate their inputs
  and will raise a more meaningful exception if an
  empty string or None is passed. This expectation is now
  documented.

* Many public methods now perform validation on arguments.
  An empty string is no longer allowed for words or text.
  Callers are expected to pass non-empty text or trap
  the validation errors that are raised. The exceptions
  raised are ``pydantic.error_wrappers.ValidationError``,
  which are currently a subclass of ``ValueError``, but since
  that
  `may change <https://pydantic-docs.helpmanual.io/usage/validation_decorator/#validation-exception>`_,
  tests check for a generic ``Exception``.

(adam)

2022-11-06 17:21:41 UTC MAIN commitmail json YAML

libslirp: Fix the patch which fixed building on FreeBSD

(triaxx)

2022-11-06 17:20:33 UTC MAIN commitmail json YAML

doc: Updated net/libslirp to 4.7.0nb1

(triaxx)

2022-11-06 17:16:07 UTC MAIN commitmail json YAML

libslirp: Fix building on FreeBSD

pkgsrc changes:
---------------
  * Add patch to include sys/socket.h on FreeBSD.
  * Fix alignment in buildlink3.mk (thanks to pkglint).
  * Bump revision.

(triaxx)

2022-11-06 17:03:26 UTC MAIN commitmail json YAML

Updated devel/hdf5, devel/hdf5-c++, math/octave

(adam)

2022-11-06 17:02:55 UTC MAIN commitmail json YAML

octave: updated to 7.3.0

GNU Octave 7.3.0

This version is a bug fixing release:

Improvements and fixes

scanf: Don窶冲 set error when reaching end of stream
Fix duplicate names displayed with mixed @class/classdef classes
canonicalize_file_name: Handle symlinks to UNC network shares
canonicalize_file_name: Generalize check for mapped network drive
fortran_vec: Fix instances of method chaining that may cause dangling pointer.
Fix wrong color in PDF printout of some LaTeX strings
unpack.m: Escape backslashes in paths on Windows
canonicalize_file_name: Check root of potential mapped network drive
nextpow2.m: Fix for input between 0.5 and 1
quad2d: Fix unintended complex conjugate return
Make sure we don窶冲 pass short 8.3 path to latex on Windows
canonicalize_file_name: Trim trailing file separators from root of mapped network drive
imformats.m: Fix isa function in return value
pie3: Fix 窶弋oo many input窶� args error.
Accept negative inputs to -2^63 for dec2bin and dec2hex
Fix incorrect lambda outputs for lsqnonneg and pqpnonneg
addtodate.m: Fix wrong month returned when subtracting a month from some end-of-month dates
var.m: Fix some Inf and NaN inputs returning 0 instead of NaN
var.m: Fix automatic broadcasting error for sparse and diagonal matrix inputs with vector weighting
legend.m: Fix error with contour plot containing clabels
dec2bin.m: Fix input validation
glpk.m: Avoid using isfinite on potentially sparse input.
var.m: Use bsxfun rather than broadcasting with vector weighting
Fix out of bound indexing in in-place broadcasting operations

GUI

Respect confirmation when deleting files in file browser widget

Build system / Tests

io.tst: Add test case for scanf
nextpow2.m: Add bug number tag to regression tests
quad2d.m: Add BIST to cset b0e90ca8e679
Add test for number of methods with classdef in @folder
Use Autoconf macro to find egrep executable.

Documentation

uitable.m: Fix example code
Clarify number of processors returned by nproc with hyperthreading.
Minor wording change to hashing documentation.
lsqnonneg and pqpnonneg: Document undocumented outputs.
pqpnonneg.m: Improve docstring readability.
lsode: Make TeX and non-TeX docstrings agree.
curl: Fix error in TeX docstring.
Update text on function argument checking.
schur: Update documentation.

(adam)

2022-11-06 17:00:57 UTC MAIN commitmail json YAML

hdf5 hdf5-c++: updated to 1.10.9

HDF5 version 1.10.9

New Features
============

    Configuration:
    -------------
    - Added new option to the h5cc scripts produced by CMake.

      Add -showconfig option to h5cc scripts to cat the
      libhdf5-settings to the standard output.

      (ADB - 2022/03/11)

    - HDF5 memory allocation sanity checking is now off by default for
      Autotools debug builds

      HDF5 can be configured to perform sanity checking on internal memory
      allocations by adding heap canaries to these allocations. However,
      enabling this option can cause issues with external filter plugins
      when working with (reallocating/freeing/allocating and passing back)
      buffers.

      Previously, this option was off by default for all CMake build types,
      but only off by default for non-debug Autotools builds. Since debug
      is the default build mode for HDF5 when built from source with
      Autotools, this can result in surprising segfaults that don't occur
      when an application is built against a release version of HDF5.
      Therefore, this option is now off by default for all build types
      across both CMake and Autotools.

      (JTH - 2022/03/01)

    - Refactored the utils folder.

      Added subfolder test and moved the 'swmr_check_compat_vfd.c file'
      from test into utils/test. Deleted the duplicate swmr_check_compat_vfd.c
      file in hl/tools/h5watch folder. Also fixed vfd check options.

      (ADB - 2021/10/18)

    - Changed autotools and CMake configurations to derive both
      compilation warnings-as-errors and warnings-only-warn configurations
      from the same files, 'config/*/*error*'.  Removed redundant files
      'config/*/*noerror*'.

      (DCY - 2021/09/29)

    Library:
    --------
    - Several improvements to parallel compression feature, including:

      * Improved support for collective I/O (for both writes and reads)

      * Significant reduction of memory usage for the feature as a whole

      * Reduction of copying of application data buffers passed to H5Dwrite

      * Addition of support for incremental file space allocation for filtered
        datasets created in parallel. Incremental file space allocation is the
        default for these types of datasets (early file space allocation is
        also still supported), while early file space allocation is still the
        default (and only supported allocation time) for unfiltered datasets
        created in parallel. Incremental file space allocation should help with
        parallel HDF5 applications that wish to use fill values on filtered
        datasets, but would typically avoid doing so since dataset creation in
        parallel would often take an excessive amount of time. Since these
        datasets previously used early file space allocation, HDF5 would
        allocate space for and write fill values to every chunk in the dataset
        at creation time, leading to noticeable overhead. Instead, with
        incremental file space allocation, allocation of file space for chunks
        and writing of fill values to those chunks will be delayed until each
        individual chunk is initially written to.

      * Addition of support for HDF5's "don't filter partial edge chunks" flag
        (https://portal.hdfgroup.org/display/HDF5/H5P_SET_CHUNK_OPTS)

      * Addition of proper support for HDF5 fill values with the feature

      * Addition of 'H5_HAVE_PARALLEL_FILTERED_WRITES' macro to H5pubconf.h
        so HDF5 applications can determine at compile-time whether the feature
        is available

      * Addition of simple examples (ph5_filtered_writes.c and
        ph5_filtered_writes_no_sel.c) under examples directory to demonstrate
        usage of the feature

      * Improved coverage of regression testing for the feature

      (JTH - 2022/2/23)

    Fortran Library:
    ----------------
    - None

    C++ Library:
    ------------
    - None

    Java Library:
    -------------
    - None

    Tools:
    ------
    - h5repack added an optional verbose value for reporting R/W timing.

      In addition to adding timing capture around the read/write calls in
      h5repack, added help text to indicate how to show timing for read/write;
          -v N, --verbose=N      Verbose mode, print object information.
              N - is an integer greater than 1, 2 displays read/write timing
      (ADB - 2022/04/01)

    High-Level APIs:
    ----------------
    - None

    C Packet Table API:
    -------------------
    - None

    Internal header file:
    ---------------------
    - None

    Documentation:
    --------------
    - None

New platforms, languages and compilers tested
==================================================
    - macOS Apple M1 11.6 Darwin 20.6.0 arm64 with Apple clang version 12.0.5

    - Fedora35 Linux 5.16.14-200.fc35 with GCC 11.2.1 and clang version 13.0.0

Bug Fixes since HDF5-1.10.8 release
===================================
    Library
    -------
    - Fixed a metadata cache bug when resizing a pinned/protected cache entry

      When resizing a pinned/protected cache entry, the metadata
      cache code previously would wait until after resizing the
      entry to attempt to log the newly-dirtied entry. This would
      cause H5C_resize_entry to mark the entry as dirty and make
      H5AC_resize_entry think that it doesn't need to add the
      newly-dirtied entry to the dirty entries skiplist.

      Thus, a subsequent H5AC__log_moved_entry would think it
      needs to allocate a new entry for insertion into the dirty
      entry skip list, since the entry doesn't exist on that list.
      This causes an assertion failure, as the code to allocate a
      new entry assumes that the entry is not dirty.

      (JRM - 2022/02/28)

    - Issue 1436 identified a problem with the H5_VERS_RELEASE check in the
      H5check_version function.

      Investigating the original fix, 812, we discovered some inconsistencies
      with a new block added to check H5_VERS_RELEASE for incompatibilities.
      This new block was not using the new warning text dealing with the
      H5_VERS_RELEASE check and would cause the warning to be duplicated.

      By removing the H5_VERS_RELEASE argument in the first check for
      H5_VERS_MAJOR and H5_VERS_MINOR, the second check would only check
      the H5_VERS_RELEASE for incompatible release versions. This adheres
      to the statement that except for the develop branch, all release versions
      in a major.minor maintenance branch should be compatible. The prerequisite
      is that an application will not use any APIs not present in all release versions.

    - Unified handling of collective metadata reads to correctly fix old bugs

      Due to MPI-related issues occurring in HDF5 from mismanagement of the
      status of collective metadata reads, they were forced to be disabled
      during chunked dataset raw data I/O in the HDF5 1.10.5 release. This
      wouldn't generally have affected application performance because HDF5
      already disables collective metadata reads during chunk lookup, since
      it is generally unlikely that the same chunks will be read by all MPI
      ranks in the I/O operation. However, this was only a partial solution
      that wasn't granular enough.

      This change now unifies the handling of the file-global flag and the
      API context-level flag for collective metadata reads in order to
      simplify querying of the true status of collective metadata reads. Thus,
      collective metadata reads are once again enabled for chunked dataset
      raw data I/O, but manually controlled at places where some processing
      occurs on MPI rank 0 only and would cause issues when collective
      metadata reads are enabled.

      (JTH - 2021/11/16, HDFFV-10501/HDFFV-10562)

    - Fixed several potential MPI deadlocks in library failure conditions

      In the parallel library, there were several places where MPI rank 0
      could end up skipping past collective MPI operations when some failure
      occurs in rank 0-specific processing. This would lead to deadlocks
      where rank 0 completes an operation while other ranks wait in the
      collective operation. These places have been rewritten to have rank 0
      push an error and try to cleanup after the failure, then continue to
      participate in the collective operation to the best of its ability.

      (JTH - 2021/11/09)

    - Fixed an issue with collective metadata reads being permanently disabled
      after a dataset chunk lookup operation. This would usually cause a
      mismatched MPI_Bcast and MPI_ERR_TRUNCATE issue in the library for
      simple cases of H5Dcreate() -> H5Dwrite() -> H5Dcreate().

      (JTH - 2021/11/08, HDFFV-11090)

    Java Library
    ------------
    - None

    Configuration
    -------------
    - Reworked corrected path searched by CMake find_package command

      The install path for cmake find_package files had been changed to use
        "share/cmake"
      for all platforms. However setting the HDF5_ROOT variable failed to locate
      the configuration files. The build variable HDF5_INSTALL_CMAKE_DIR is now
      set to the <INSTALL_DIR>/cmake folder. The location of the configuration
      files can still be specified by the "HDF5_DIR" variable.

(adam)