Updated lang/clang to 3.4.2

(adam)

Changes 3.4.2:
libLLVM-3.4.so soname fix.
PowerPC: Fix for 128-bit shifts.
R600: Shader calling convention fix.

(adam)

Fix build under SCO OpenServer 5.0.7/3.2.

(ryoon)

Pullup ticket #4459.

(tron)

Pullup ticket #4459 - requested by obache
sysutils/libpciaccess: build fix for dependent packages under NetBSD 5.*

Revisions pulled up:
- sysutils/libpciaccess/builtin.mk                              1.2

---
  Module Name: pkgsrc
  Committed By: obache
  Date: Sun Jul 13 13:00:33 UTC 2014

  Modified Files:
  pkgsrc/sysutils/libpciaccess: builtin.mk

  Log Message:
  libpciacess on NetBSD-5 is missing linkage with libz whereas using it.

(tron)

Updated www/moodle to 2.7.1

(wen)

Update to 2.7.1

Upstream changes:
2.7.1
Highlights
MDL-41383 - File picker works when zooming in and out of browser
MDL-45580 - PDF Annotations working with multiple attempts
Functional changes
MDL-43274 - Course logs can no longer be deleted when course is reset
API changes
MDL-44871 - Behat tests written for Atto functionalities
MDL-43669 - Configuration option added so that mail can be sent from noreply address exclusively
UI changes
MDL-45599 - The term 'add-on' is changed to 'plugin'
Security issues
A number of security related issues were resolved. Details of these issues will be released after a period of approximately one week to allow system administrators to safely update to the latest version.

Fixes and improvements
MDL-44124 - iCal import recurrence rules working consistently
MDL-45579 - Duplicate group enrolment keys for the same course are no longer allowed
MDL-45682 - Can now insert images using Chrome

(wen)

Updated devel/readline to 6.3nb1

(ryoon)

Bump PKGREVISION

If S_ISSOCK is not defined, do not use it.
Fix mysql55-client build under SCO OpenServer 5.0.7/3.2.

(ryoon)

Updated devel/rudiments to 0.47

(fhajny)

Update rudiments to 0.47.

Changes:
- fixed possible null-dereference in xmldomnode::safeAppend
- added charstring::inSetIgnoringCase
- xmldomnode::setAttributeValue does nothing when the null node is
  referenced now
- fixed a codetree bug that could cause indentation to attempt to go
  negative when using an unsigned number
- added a configure test to see if -Wno-format is needed
- configure tests for mlockall/munlockall attempt link now
- added sys/types.h before sys/un.h in sys/un.h test for older freebsd
- implemented stubs for pure virtual methods of client and server classes so
  instances of them could be created to attach already-open file descriptors
- unified usage of select/poll and prefer poll
- pushed all select/poll-related code into listener class
- removed problematic and unused useListener-related methods in
  filedescriptor class
- epoll is used in place of select/poll for systems that support it
- kqueue is used in place of select/poll for systems that support it
- consolidated getpagesize() calls to use sys::getPageSize()
- added detection and support for __vsnprintf for platforms that have
  that instead of vsnprintf
- added cancel and raiseSignal methods to the thread class
- fixed datetime memory leak
- added xmldomnode::clone method to clone a node
- renamed variablebuffer to bytebuffer
- renamed rawbuffer to bytestring
- refactored linkedlist
- added singlylinkedlist class
- added sort, detach, move and insert methods to linkedlist classes
- fixed file::open using O_CREAT without O_EXCL on windows

(fhajny)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Turn off visibility for GCC 4.2.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

SCO OpenServer 5.0.7/3.2 has strtoimax() declaration in inttypes.h,
but libc.so has no implementation. And gnulib in GNU tar 1.27 has broken
strtoimax() support. We have to use BSDL implementation instead.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Updated databases/mongo-c-driver to 0.98.0

(fhajny)

Update mongo-c-driver to 0.98.0.

Changes in 0.98.0:
- This release is primarily a bugfix release and stabilization effort as we
  approach 1.0 of the MongoDB C driver.
- This release requires 0.98.0 of Libbson for improvements to the memory
  management system. You can now setup custom memory allocators at the
  start of the process.

Changes in 0.96.4:
- build/mci.sh script for automatically building Debian packages, RPMs,
  and Solaris packaging based on the host operating system.
- Various libbson improvements, now depending on 0.8.4.
- Alignment fixes for Solaris Studio C compiler via libbson.
- Addition of mongoc_gridfs_remove_by_filename() for removing a file from
  gridfs by filename.
- client command functions can now take a fully qualified namespace.
- collections can now support names that indicate a command namespace.
- Commands will no longer fail if they do not contain an "ok" field.
- OP_QUERY will now set the slaveOk bit in the wire protocol if
  readPreferences are set to non-PRIMARY.
- Various documentation and build fixes.

(fhajny)

Updated wm/ctwm to 3.8.2

(obache)

Update ctwm to 3.8.2.
Based on maintainer update request per PR pkg/48820.

>From CHANGES:
    Changes from version 3.8.1 to 3.8.2
    2014-??-??
    -----------------------------------

    1 - Various code cleanups.
Cleanup re: raising and warping to windows (previous location of
pointer in windows), SaveWorkspaceFocus. A few extra NULL
pointer checks.
Logical hasfocusvisible cleanup.
Rename TwmWindow.list to iconmanagerlist, and various smaller
cleanups.
Eliminated TwmWindow TwmRoot from struct ScreenInfo. Mostly a
mechanical change.
I found some cases where the dummy TwmWindow was apparently
mistakenly included in a loop. Replaced .next with TwmWindow
*FirstWindow and .cmaps witn Colormaps RootColormaps. Other
members were not used.

    2 - Fix a bug where insufficient validation of the size hints
        resulted in a division by zero when considering aspect ratio.

    3 - Lots of minor compiler warnings and build fixes, a few of which
        were real current or latent bugs.  Leave warnings enabled by
        default.  A few of the build system adjustments may break very
        old systems (e.g., those with original AT&T yacc).

    4 - Fix incorrect inclusion of $DESTDIR in some paths.

    5 - Update for new website and mailing list at ctwm.org.

    6 - Look at _MOTIF_WM_HINTS for titlebar-less or border-less
windows.

(obache)

Fix SCO OpenServer 5.0.7 build.
Functionality is not tested.

(ryoon)

Fix build under SCO OpenServer 5.0.7/3.2.

(ryoon)

For SCO OpenServer 5.0.7/3.2, sco-os5 target should be used.
And libsocket is needed.

(ryoon)

SCO OpenServer 5.0.7/3.2 does not support SSSE3.

(ryoon)

Updated devel/libbson to 0.98.0

(fhajny)

Update libbson to 0.98.

Changes in 0.98:
- This release includes a new memory callback vtable to help in embedding
  situations that have their own custom allocator such as various language
  runtimes.
- A few compilation fixes for various C++ compilers have also been included.

Changes in 0.8.4:
- Alignment fixes for Solaris Studio C compiler.
- RPM and Debian packaging helpers.
- bson_gettimeofday() has dropped the deprecated timezone field used when
  calling posix gettimeofday(). This eases portability concerns. It is
  technically an ABI break, but since the field was never set, in reality
  it shouldn't be an issue.
- Multi-byte optimizations for bson_oid_to_string() have been disabled on
  non-x86 based platforms. This should aid in architecture portability.
- The JSON parser can now support $numberLong.
- bson_ascii_strtoll() has been added, which is a portable strtoll()
  implementation. This is primarily useful for Windows users and is used
  by the JSON parser.
- A bug was fixed in bson_iter_find_descendant() where the wrong field
  could be matched if it's prefix matched the query.
- bson_array_as_json() has been added to convert a bson_t as a top-level
  array.

(fhajny)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Fix SCO OpenSrver 5.0.7/3.2 build.
Add configuration for SCOOSR5.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build really.
Treat SCO_SV as SysV.

(ryoon)

Updated databases/redis to 2.8.13

(fhajny)

Update redis to 2.8.13.

--[ Redis 2.8.13 ] Release date: 14 Jul 2014

# UPGRADE URGENCY: LOW for Redis and Sentinel, this is a features enhancement
                  release mostly. Since this release introduces the latency
                  monitoring feature, Redis 2.8 users experiencing latency
                  issues are strongly encouraged to upgrade.

* [FIX] CLIENT KILL minor backward compatibility fixes. (Salvatore Sanfilippo)
* [FIX] Enable HAVE_ATOMIC for PowerPC. (Matt Stancliff)
* [FIX] More robust PSYNC and AOF rewrites tests. (Salvatore Sanfilippo)
* [FIX] Solaris build fixed. (Matt Stancliff, Salvatore Sanfilippo)

* [NEW] The new latency monitoring feature, as documented at
        http://redis.io/topics/latency-monitor (Salvatore Sanfilippo)
* [NEW] The COMMAND command, exposing the Redis command table
        as an API. (Matt Stancliff)
* [NEW] Update used memory with C11 __atomic. (Matt Stancliff)

--[ Redis 2.8.12 ] Release date: 23 Jun 2014

# UPGRADE URGENCY: HIGH for Redis, CRITICAL for Sentinel.

# WARNING: This release contains a non backward compatible semantical change
          to Lua script that should affect an almost zero number of users.

* [FIX / BREAKS BACKWARD COMPATIBILITY] Using SELECT inside Lua scripts no
      longer makes the selected DB to be set in the calling client.
      So Lua can still use SELECT, but the client calling the script will
      remain set to the original DB. Thix fixes an issue with Redis
      replication of Lua scripts that called SELECT without reverting the
      selected DB to the original one. (Salvatore Sanfilippo)
* [FIX] Sentinel failover was instalbe if the master was detected as available
        during the failover (especially during manual failovers) because
        of an implementation error (lack of checking of
        SRI_PROMOTED flag). (Salvatore Sanfilippo)
* [FIX] Cancel SHUTDOWN if initial AOF is being written. (Matt Stancliff)
* [FIX] Sentinel: bind source address for outcoming connections. (Matt
        Stancliff).
* [FIX] Less timing sensitive Sentinel tests. (Salvatore Sanfilippo).

* [NEW] redis-cli --intrinsic-latency stopped with SIGINT still reports
        stats (Matt Stancliff)
* [NEW] Sentinels broadcast an HELLO message ASAP after a failover in order to
        reach a consistent state faster (before it relied for periodic HELLO
        messages). (Salvatore Sanfilippo).
* [NEW] Jemalloc updated to 3.6.0. (Salvatore Sanfilippo)
* [NEW] CLIENT LIST speedup. (Salvatore Sanfilippo)
* [NEW] CLIENT LIST new unique incremental ID to every client. (Salvatore
        Sanfilippo)
* [NEW] ROLE command added. (Salvatore Sanfilippo)
* [NEW] CLIENT KILL new form to kill by client type and ID (see doc at
        redis.io for more info). (Salvatore Sanfilippo)
* [NEW] Sentinel now disconnects clients when instances are reconfigured
        (see http://redis.io/topics/sentinel-clients). (Salvatore Sanfilippo)
* [NEW] Hiredis update to latest version. (Matt Stancliff)

--[ Redis 2.8.11 ] Release date: 11 Jun 2014

# UPGRADE URGENCY: HIGH if you use Lua scripting, LOW otherwise.

* [FIX] A previous fix for Lua -> Redis numerical precision enhancement
        introduced a new problem. In Redis 2.8.10 commands called from Lua
        passing a string that "looks like" a very large number, may actually
        use as argument the string converted as a float. This bug is now
        fixed.
* [FIX] Now commands other than *PUSH* adding elements to a list will be able
        to awake clients blocked in a blocking POP operation.
* [FIX] Cygwin compilation fixes.

--[ Redis 2.8.10 ] Release date: 5 Jun 2014

# UPGRADE URGENCY: HIGH if you use min-slaves-to-write option.

* [FIX] IMPORTANT! A min-slaves-to-write option active in a slave totally
        prevented the slave from acception the master stream of commands.
        This release includes testes for min-slaves-to-write, and a fix
        for this issue.
* [FIX] Sometimes DEL returned 1 for already expired keys. Fixed.
* [FIX] Fix test false positive because new osx 'leaks' output.
* [FIX] PFCOUNT HLL cache invalidation fixed: no wrong value was reported
        but the cache was not used at all, leading to lower performances.
* [FIX] Accept(2) multiple clients per readable-event invocation, and better
        processing of I/O while loading or busy running a timedout script.
        Basically now the LOADING / BUSY errors are reported at a decent
        speed.
* [FIX] A softwaer watchdog crash fixed.
* [FIX] Fixed a Lua -> Redis numerical precision loss.

* [NEW] Lua scripting engine speed improved.
* [NEW] Sentinel generates one new event for humans to understand better
        what is happening during a failover: +config-update-from.
        Also the time at which a failover will be re-attempted is logged.

(fhajny)

Fix build under SCO OpenServer 5.0.7/3.2.

(ryoon)

Updated textproc/sphinxsearch to 2.1.9

(fhajny)

Update sphinxsearch 2.1.9.

Changes:
- fixed #1994, parsing of empty JSON arrays
- fixed #1987, handling of index_exact_words with AOT morphology
  and infixes
- fixed #1984, teaching HTML parser to handle hex numbers
- fixed #1983, master and agents networking issue
- fixed #1977, escaping of characters doesn't work with exceptions
- fixed #1968, parsing of WEIGHT() function (queries to distributed
  indexes affected)

(fhajny)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Updated devel/gettext-tools to 0.18.3.2nb1

(jperkin)

xz is a runtime dependency, used by autopoint.

Bump PKGREVISION.

(jperkin)

+ p5-Text-Soundex

(obache)

Added textproc/p5-Text-Soundex version 3.04

(obache)

Import p5-Text-Soundex-3.04 as textproc/p5-Text-Soundex.
Based on PR pkg/48930 by David H. Gutteridge.

Text::Soundex provides an implementation of an algorithm for indexing
names by sound, as pronounced in English.

(obache)

Fixes for old native modular X, as NetBSD-5.
* go to buildlink with fixesproto4 if using monolithic X.
* bump API_DEPENDS, older will be handled by fixesproto4.
* set xextprot requirement if using fixesproto from pkgsrc (XXX >=5.0).
* simplify builtin.mk, older will be handled by fixesproto4.

(obache)

remove a file in the build directory that causes conflict on case insensitive file system.
fixes a regression of PR pkg/41607

(dbj)

Updated ham/trustedQSL to 2.0.3

(mef)

Upgrade tqsl from 2.0.2RC4 to 2.0.3
----------------------------
tqsl-2.0.2 to 2.0.3 change:
----------------------------
(tqslilb: 2.4)
Fix defect that doesn't allow adding station locations if only a single
callsign certificate is installed.

(following diff is manually editted, tabs are deleted)
diff -urp tqsl-2.0.2/src/location.cpp tqsl-2.0.3/src/location.cpp
--- tqsl-2.0.2/src/location.cpp 2014-07-13 05:18:13.000000000 +0900
+++ tqsl-2.0.3/src/location.cpp 2014-07-17 10:22:16.000000000 +0900
@@ -1152,6 +1152,9 @@ update_page(int page, TQSL_LOCATION *loc
                        field.idx = static_cast<int>(field.items.size());
                field.items.push_back(item);
        }
+      if (field.idx == -1 && field.items.size() == 1) {
+              field.idx = 0;
+      }
        if (field.idx >= 0) {
                field.cdata = field.items[field.idx].text;
        }
----------------------------
tqsl-2.0.2RC5 to 2.0.2 change: (Authors note):
----------------------------
As I've had no comments on the 2.0.2-rc5 beta, I've decided that it's time to release it.

The kits on sourceforge have been updated to the final v2.0.2 release.

https://sourceforge.net/projects/trustedqsl/files/TrustedQSL/v2.0.2/

The README there is the preliminary release notes.
Thanks to everyone for the help with testing and reporting issues.
----------------------------
tqsl-2.0.2RC4 to 2.0.2RC5 change:
----------------------------
This release fixes a pair of related defects that have been there
since TQSL 1.x

When you create a station location, you associate it with a callsign
certificate. When you sign a log, you select a location for signing,
which then uses the callsign to select the right callsign certificate.

The problems happen when you do unexpected things with those
certificates.

If you create a station location for K1MU, then delete all of the
certificates for K1MU, then signing a log would cause an "Invalid
Argument" error. TQSL has been corrected to now display an error that
there are no valid callsign certificates.

Similarly, if you create a station location and then let the
associated callsign certificate to expire, trying to sign using that
location would also give an unhelpful "Invalid Argument" message.

When there were no matching certificates, displaying the properties of
a station location would display an incorrect callsign.

These defects have been corrected in RC5 so that useful error messages
are displayed for these cases.

(mef)

Updated devel/p5-Devel-Cover to 1.15

(wen)

Update to 1.15

Release 1.15 - 1 June 2014
- Allow -coverage default,-pod option to cover (David Cantrell) (github 89).
- Get cpancover coverage in docker containers.
- Add CGI.pm as a prerequisite.
- Test against 5.20.0 and 5.21.0.
- Add longer delay in tests to try to appease *BSD.

Release 1.14 - 2 May 2014
- Fix test failures on OpenBSD, NetBSD and Windows.

Release 1.13 - 28 April 2014
- Test against 5.19.11.
- Fix "use 5.xyz;" on pre 5.10 perls (github 87).
- Round percentages down in summary and reports (also fixes Windows tests).

(wen)

Added devel/p5-Inline-C version 0.61

(wen)

Add p5-Inline-C

(wen)

Import Inline-C-0.61 as devel/p5-Inline-C.

Inline::C is a module that allows you to write Perl subroutines in C.
Since version 0.30 the Inline module supports multiple programming
languages and each language has its own support module.

(wen)

Updated devel/p5-Inline to 0.63

(wen)

Update to 0.63

Upstream changes:
0.63 Thu Jul 17 07:51:46 PDT 2014
- Add mailing list info to Meta and Contributing

(wen)

Updated devel/p5-boolean to 0.38

(wen)

Update to 0.38

Upstream changes:
0.38 Wed Jun 25 21:08:05 PDT 2014
- Revert json.t. Failed on cpantesters.

0.37 Wed Jun 25 16:47:29 PDT 2014
- Add JSON to recommends

0.36 Wed Jun 25 16:46:39 PDT 2014
- Fix homepage in metadata

0.35 Tue Jun 17 10:59:25 PDT 2014
- Remove ABSTRACT and use manual $VERSION

0.34 Sat Jun 14 13:16:30 PDT 2014
- Release 0.33 got botched.

0.33 Sat Jun 14 12:59:00 PDT 2014
- Package with Zilla::Dist
- Add badges

(wen)

Force re-build.

(tron)

Pullup ticket #4458 - requested by obache
textproc/json-c: bug fix patch

Revisions pulled up:
- textproc/json-c/Makefile                                      1.10
- textproc/json-c/hacks.mk                                      1.1

---
  Module Name: pkgsrc
  Committed By: obache
  Date: Thu Jul 17 09:18:27 UTC 2014

  Modified Files:
  pkgsrc/textproc/json-c: Makefile
  Added Files:
  pkgsrc/textproc/json-c: hacks.mk

  Log Message:
  Add hack for using gcc builtin atomic function, missing for i386.
  PR pkg/48990.

  Bump PKGREVISION.

(tron)

Pullup tickets #4453, #4454, #4456, #4457, #4457 and #4458.

(tron)

Pullup ticket #4457 - requested by taca
www/drupal6: security update

Revisions pulled up:
- www/drupal6/Makefile                                          1.48
- www/drupal6/distinfo                                          1.31

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Thu Jul 17 03:57:57 UTC 2014

  Modified Files:
  pkgsrc/www/drupal6: Makefile distinfo

  Log Message:
  Update drupal6 to 6.32, security fix release.

  Drupal 6.32, 2014-07-16
  ----------------------
  - Fixed security issues (multiple vulnerabilities). See SA-CORE-2014-003.

(tron)

Pullup ticket #4456 - requested by taca
www/drupal7: security update

Revisions pulled up:
- www/drupal7/Makefile                                          1.27
- www/drupal7/distinfo                                          1.20

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Thu Jul 17 03:57:10 UTC 2014

  Modified Files:
  pkgsrc/www/drupal7: Makefile distinfo

  Log Message:
  Update drupal7 to 7.29, security fix release.

  Drupal 7.29, 2014-07-16
  ----------------------
  - Fixed security issues (multiple vulnerabilities). See SA-CORE-2014-003.

(tron)

Pullup ticket #4455 - requested by taca
mail/p5-Email-Address: security update

Revisions pulled up:
- mail/p5-Email-Address/Makefile                                1.17
- mail/p5-Email-Address/distinfo                                1.8

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Wed Jul 16 15:51:57 UTC 2014

  Modified Files:
  pkgsrc/mail/p5-Email-Address: Makefile distinfo

  Log Message:
  Update p5-Email-Address to 1.905.

  1.905    2014-06-17 22:55:00-04:00 America/New_York
          - additional change to avoid slowdown; this addresses CVE-2014-0477
            change provided by Bastian Blank <waldi@debian.org>

  1.904    2014-06-14 00:21:21-04:00 America/New_York (TRIAL RELEASE)
          - avoid being fooled by an addr-like string in the phrase
          - avoid a slowdown by avoiding backtracking into the phrase

  1.903    2014-04-17 21:02:14-04:00 America/New_York
          - correctly parenthesize false comment "0" (sigh)

  1.902    2014-04-17 10:45:11-04:00 America/New_York
          - when formatting an address where phrase is empty but comment is not,
            do not include "" for the phrase; just omit it
          - when formatting and address where comment lacks enclosing parens, add
            them

(tron)

Pullup ticket #4454 - requested by taca
lang/php54: security patch

Revisions pulled up:
- lang/php54/Makefile                                          1.24
- lang/php54/distinfo                                          1.44
- lang/php54/patches/patch-ext_spl_spl__array.c                1.1
- lang/php54/patches/patch-ext_spl_spl__dllist.c                1.1

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Sun Jul 13 15:25:03 UTC 2014

  Modified Files:
  pkgsrc/lang/php54: Makefile distinfo
  Added Files:
  pkgsrc/lang/php54/patches: patch-ext_spl_spl__array.c
      patch-ext_spl_spl__dllist.c

  Log Message:
  Add fix for CVE-2014-4698 and CVE-2014-4670.

  Bump PKGREVISION.

(tron)

Pullup ticket #4453 - requested by taca
lang/php55: security patch

Revisions pulled up:
- lang/php55/Makefile                                          1.15
- lang/php55/distinfo                                          1.26
- lang/php55/patches/patch-ext_spl_spl__array.c                1.1
- lang/php55/patches/patch-ext_spl_spl__dllist.c                1.1

---
  Module Name: pkgsrc
  Committed By: taca
  Date: Sun Jul 13 15:23:42 UTC 2014

  Modified Files:
  pkgsrc/lang/php55: Makefile distinfo
  Added Files:
  pkgsrc/lang/php55/patches: patch-ext_spl_spl__array.c
      patch-ext_spl_spl__dllist.c

  Log Message:
  Add fix for CVE-2014-4698 and CVE-2014-4670.

  Bump PKGREVISION.

(tron)

Fix build under SCO OpenServer 5.0.7/3.2.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Add sourcehansans-fonts

(ryoon)

Added fonts/sourcehansans-fonts version 1.000

(ryoon)

Import sourcehansans-fonts-1.000 as fonts/sourcehansans-fonts.

Source Han Sans fonts are open source Pan-CJK fonts from Adobe.

(ryoon)

Updated fonts/roboto-fonts to 20140716

(ryoon)

Update to 20140716

* Update MASTER_SITES and HOMEPAGE
* Use Google's zip archive file

Changelog:
* Design improvements.
* More fonts
See http://googledevelopers.blogspot.com/2014/07/the-new-roboto.html

(ryoon)

Add SCO OpenServer 5.0.7/3.2 support. Fix build.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Updated security/p5-Digest-Perl-MD5 to 1.9

(wen)

Update to 1.9

No upstream changelog.

(wen)

snprintf is required. Fix build under SCO OpenServer 5.0.7/3.2.

(ryoon)

SCO OpenServer 5.0.7/3.2 has no snprintf and vsnprintf.

(ryoon)

Updated security/p5-Digest-SHA to 5.92

(wen)

Update to 5.92

Upstream changes:
5.92  Sun Jun  1 00:15:44 MST 2014
- fixed reserved-word clash when compiling with C++
-- use 'classname' instead of 'class'
-- ref. SHA.xs (rt.cpan.org #96090)
- silenced MSC compiler warning about signed/unsigned comparison
-- ref. SHA.xs (rt.cpan.org #95830)

5.91  Fri May 16 10:21:44 MST 2014
- restored original 'addfile' for use on opened file handles
-- allows callbacks in place of actual files
-- ref. IO::Callback (rt.cpan.org #95643)
- re-established inheritance from Digest::base
-- to pick up future Digest enhancements automatically
- cleaned up documentation

5.90  Wed May  7 07:57:08 MST 2014
- consolidated all dynamic memory allocation into XSUBs
-- streamlines referencing of SHA objects
-- simplifies DESTROYing of objects
- enhanced Makefile.PL to allow 'use warnings'
-- automatically reverts to $^W for early Perls
- scrubbed C and Perl code to remove all compiler warnings

(wen)

Updated security/p5-Digest-SHA3 to 0.22

(wen)

Update to 0.22

Upstream changes:
0.22  Sun Jun  1 00:15:46 MST 2014
- fixed reserved-word clash when compiling with C++
-- use 'classname' instead of 'class'
-- ref. SHA3.xs (rt.cpan.org #96090)

0.21  Fri May 16 10:21:46 MST 2014
- restored original 'addfile' for use on opened file handles
-- allows callbacks in place of actual files
-- ref. IO::Callback (rt.cpan.org #95643)
- re-established inheritance from Digest::base
-- to pick up future Digest enhancements automatically
- cleaned up documentation

0.20  Wed May  7 07:57:10 MST 2014
- consolidated all dynamic memory allocation into XSUBs
-- streamlines referencing of SHA3 objects
-- simplifies DESTROYing of objects
- enhanced Makefile.PL to allow 'use warnings'
-- automatically reverts to $^W for early Perls
- scrubbed C and Perl code to remove all compiler warnings

(wen)

Update comment for PR pkg/48075.

(ryoon)

Fix SCO OpenServer 5.0.7/3.2 build.
libsocket is needed.

(ryoon)

Updated devel/p5-strictures to 1.005004

(wen)

Update to 1.005004

Upstream changes:
1.005004 - 2014-03-06
  - make sure meta files list extra modules as recommendations, not requirements

1.005003 - 2014-02-12
  - added support for PUREPERL_ONLY (rt#91407)
  - fixed using strictures->VERSION to query the version (rt#92965)

1.005002 - 2013-12-10
  - extra prereqs will be listed as hard prerequisites if a compiler is
    available

(wen)

Fix SCO OpenServer 5.0.7/3.2 build.
It has no S_ISSOCK.

(ryoon)

Updated devel/p5-Perl-Tidy to 20140711

(wen)

Update to 20140711

Upstream changes:
2014 07 11
      - Fixed RT #94902: abbreviation parsing in .perltidyrc files was not
        working for multi-line abbreviations.  Thanks to Eric Fung for
        supplying a patch.

      - Fixed RT #95708, misparsing of a hash when the first key was a perl
        keyword, causing a semicolon to be incorrectly added.

      - Fixed RT #94338 for-loop in a parenthesized block-map.  A code block within
        parentheses of a map, sort, or grep function was being mistokenized.  In
        rare cases this could produce in an incorrect error message.  The fix will
        produce some minor formatting changes.  Thanks to Daniel Trizen
        discovering and documenting this.

      - Fixed RT #94354, excess indentation for stacked tokens.  Thanks to
        Colin Williams for supplying a patch.

      - Added support for experimental postfix dereferencing notation introduced in
        perl 5.20. RT #96021.

      - Updated documentation to clarify the behavior of the -io flag
        in response to RT #95709.  You can add -noll or -l=0 to prevent
        long comments from being outdented when -io is used.

      - Added a check to prevent a problem reported in RT #81866, where large
        scripts which had been compressed to a single line could not be formatted
        because of a check for VERSION for MakeMaker. The workaround was to
        use -nvpl, but this shouldn't be necessary now.

      - Fixed RT #96101; Closing brace of anonymous sub in a list was being
        indented.  For example, the closing brace of the anonymous sub below
        will now be lined up with the word 'callback'.  This problem
        occured if there was no comma after the closing brace of the anonymous sub.
        This update may cause minor changes to formatting of code with lists
        of anonymous subs, especially TK code.

(wen)

Fix SCO OpenServer 5.0.7/3.2 build.

(ryoon)

Updated devel/p5-Log-Agent to 1.000

(wen)

Update to 1.000
Add LICENSE

Upstream changes:
Version 1.000 (2013-08-13)
Switched to standard X.YYYZZZ versioning.

Replaced ChangeLog with changes.pod.

Updated 'clean' arguments in Makefile.PL.

Updated Agent.pm and replaced old README.

Version 0.308 (2013-08-10)
Changed license to the Artistic License 2.0.

Replaced META.yml with META.json.

Fixed tests for Carp behavior and file permissions.

(wen)

Updated biology/bioperl to 1.6.924

(wen)

Update to 1.6.924

Upstream changes:
1.6.924

    [Significant changes]

    * Bug/feature issue tracking has moved to GitHub Issues:
          https://github.com/bioperl/bioperl-live/issues
    * DB_File has been demoted from "required" to "recommended",
      which should make easier for Windows users to install BioPerl
      if they don't need that module.

    [New features]

    * Bio::Search::HSP::GenericHSP
        - Bug #3370, added a "posterior_string" method to retrieve the
          posterior probability lines (PP) from HMMER3 reports [fjossandon]
        - Added a "consensus_string" method to retrieve the consensus
          structure lines (CS|RF) from HMMER2 and HMMER3 reports when available [fjossandon]
    * Bio::SearchIO::hmmer2
        - The number of identical and conserved residues are now calculated
          directly from the homology line [fjossandon]
        - Now the Query Length and Hit Length are reported when the alignment
          runs until the end of the sequence/model ('.]' or '[]') [fjossandon]
        - Implemented the capture of the consensus structure lines [fjossandon]
    * Bio::SearchIO::hmmer3
        - The number of identical and conserved residues are now calculated
          directly from the homology line [fjossandon]
        - Now the Hit Length is reported when the alignment runs until the end
          of the sequence/model ('.]' or '[]') [fjossandon]
        - Implemented the capture of the consensus structure lines [fjossandon]
        - Implemented the capture of the posterior probability lines [fjossandon]
        - Completed the development of NHMMER parsing, including alignments [fjossandon]
    * Bio::SearchIO::SearchResultEventBuilder & Bio::SearchIO::IteratedSearchResultEventBuilder
        - Feature #2615, moved "_init_parse_params", "max_significance, "signif",
          "min_score", "min_bits, and "hit_filter" methods from
          'IteratedSearchResultEventBuilder' to parent 'SearchResultEventBuilder'.
          This means that the Bio::SearchIO->new() parameters '-signif', '-score',
          '-bits' and '-hit_filter' will now work with other Bio::SearchIO formats
          besides Blast, instead of being ignored. Added tests for all moved methods
          using HMMER outputs and run the full test suite and everything pass [fjossandon]
    * Bio::SeqIO::MultiFile
        - Autodetection of file format [fangly]
    * Bio::Tools::GuessSeqFormat:
        - Format detection from non-seekable filehandles such as STDIN [fangly]

    [Bug fixes]

    * Fix problems when using Storable as backend for cloning [v1.6.x branch, tsibley]
    * Fix potential problems with Storable in Bio::DB::SeqFeature::Store [tsibley]
    * SeqFeature::Lite: Fixed wrong strand when using "+", "-", or "." [nathanweeks]
    * Abstract: Fixed ActivePerl incapability of removing temporary files
      because of problems closing tied filehandles [fjossandon]
    * IndexedBase: For Windows' ActivePerl, several LocalDB tests were failing
      because ActivePerl were producing a ".index.pag" and ".index.dir"
      files instead of a single ".index" file (like Strawberry Perl).
      Now those temporary files are correctly considered and deleted. [fjossandon]
    * Test files: Added missing module requirements (DB_File and Data::Stag)
      to several tests files that were failing because those modules were
      not present. Now those test files are correctly skipped instead. [fjossandon]
    * Blast: Added support to changes in bl2seq from BLAST+ output, which
      now uses "Subject=" instead of ">" to start hit lines [yschensandiego]
    * Phylip: Return undef in "next_aln" at file end to avoid
      an infinite loop [yschensandiego]
    * HMMER3: When a hit description is too long, it is truncated in
      the Scores table. In those cases, the more complete description from
      the Annotation line (>>) will be used [fjossandon]
    * GenericHSP: Added '.' to gap symbols in "_pre_gaps" (except for ERPIN),
      since it is now used by HMMER3 format in alignments [fjossandon]
    * GenericHit: Changed "frac_aligned_query" and "frac_aligned_hit"
      to return undef if the query/hit length is unknown (like in some
      HMMER outputs), to avoid division by 0 crashes. Also "query_length"
      now is set to 0 if its undefined, to be consistent with hit "length" [fjossandon]
    * HMMER: fixed many bugs in the parsing of Hmmer2 and Hmmer3 outputs,
      added support to multi-query reports, reduced code redundancy,
      and eliminated the automatic removal of hits below "inclusion threshold" [fjossandon]
    * [3369] - Fixed reported bugs in parse from HMMSEARCH3 reports [fjossandon]
    * [3446] - Fixed wrong marker position in Bio::Map::Physical [fjossandon]
    * [3455] - Fixed wrong print of DBLink in Genbank file [bosborne]
    * Fixed some Bio::Root::Utilities subroutines [fjossandon]
    * Double-quotes on paths are needed in some places [fjossandon]
    * [3453] - Allow multiple homologies and products in Entrezgene [fjossandon]
    * Use "NUL" instead of"/dev/null" when running in Windows [fjossandon]
    * Updated all files from Bio-Root, Bio-Coordinate and Bio-SearchIO-blastxml
      with the latest changes made in their own repositories [fjossandon]
    * General synching of files with the master branch [fjossandon]
    * Fixed tests failing in Windows because of using Linux commands [fjossandon]
    * Closed many open filehandles that prevented temporary files deletion [fjossandon]
    * Fixed broken MeSH parser [fjossandon]
    * Fixed missing detection of format in SeqIO when given a -string [fangly]

(wen)

+ py{33,34}-html-docs

(obache)

Added lang/py34-html-docs version 3.4.1

(obache)

Import py34-html-docs-3.4.1 as lang/py34-html-docs.
PR pkg/48967

HTML Documentation for Python 3.4

(obache)

Added lang/py33-html-docs version 3.3.5

(obache)

Import py33-html-docs-3.3.5 as lang/py33-html-docs.
PR pkg/48929.

HTML Documentation for Python 3.3

(obache)

Updated lang/py27-html-docs to 2.7.8nb1

(obache)

Some packaging improvements.
* prevent to use derecated doc/html hier.
* install whole contents, especially css and js are useful parts.
* use static PLIST.

Bump PKGREVISION.

(obache)

Updated lang/py26-html-docs to 2.6.9nb1

(obache)

Some packaging improvements.
* prevent to use deprecated doc/html hier.
* install whole contents, especially css and js are useful parts.
* use static PLIST.

Bump PKGREVISION.

(obache)