--- - branch: MAIN date: Thu Jan 24 01:40:58 UTC 2013 files: - new: '1.2' old: 1.1.1.1 path: pkgsrc/math/R-spacetime/Makefile pathrev: pkgsrc/math/R-spacetime/Makefile@1.2 type: modified - new: '1.2' old: 1.1.1.1 path: pkgsrc/math/R-spacetime/distinfo pathrev: pkgsrc/math/R-spacetime/distinfo@1.2 type: modified id: 20130124T014058Z.4939547da11321a557bdc3523e408123200d315b log: | Update to 1.0.3 Upstream changes: 2012-12-14 13:39 EdzerPebesma * inst/doc/jss816.Rnw, inst/doc/sto.Rnw, inst/doc/stpg.Rnw: updates 2012-11-27 16:57 EdzerPebesma * inst/doc/52n_logocl.pdf, inst/doc/jss816.Rnw, inst/doc/logo52n.pdf: logo name change 2012-11-27 16:33 EdzerPebesma * R/STFDF-methods.R, R/coerce.R, inst/doc/52n_logocl.pdf, inst/doc/jss816.Rnw, man/STFDF-class.Rd, man/na.Rd, tests/Examples/spacetime-Ex.Rout.save, tests/basic.R, tests/basic.Rout.save: as(stfdf, "xts") now exports more than one variable; added na.* docs added 52N logo to vignette 2012-11-24 19:03 EdzerPebesma * DESCRIPTION, NAMESPACE, R/Class-xts.R, R/aggregate.R, R/na.R, R/stplot.R, demo/gvis.R, inst/doc/sto.Rnw, man/stplot.Rd, man/timematch.Rd, tests/Examples/spacetime-Ex.Rout.save: added na.locf, na.approx and na.spline functions (na.R, na.Rd); added require(zoo) to aggregate method that needs aggregate.zoo, so that NAMESPACE is now clean; added zoo to Suggests: corrected key.space argument in stplot (mode = 'ts'); 2012-11-17 15:54 EdzerPebesma * DESCRIPTION, NAMESPACE, R/ST-methods.R, R/aggregate.R, R/interval.R, R/over.R, R/stplot.R, R/timematch.R, inst/doc/sto.Rnw, man/timematch.Rd, tests/Examples/spacetime-Ex.Rout.save, tests/over.R, tests/over.Rout.save: timeMatch now is an S4 generic; NAMESPACE imports only what is needed, and some repairs for zoo; sto.Rnw restored; over now always uses interval:interval_overlaps for overlapping intervals; updated test outputs; DESCRIPTION now mentions package intervals 2012-11-13 11:20 EdzerPebesma * NAMESPACE: import MATCH.default, to accomodate zoo at CRAN 2012-11-12 18:34 EdzerPebesma * NAMESPACE, R/aggregate.R: updates; 2012-11-12 18:18 EdzerPebesma * NAMESPACE, R/aggregate.R, R/timematch.R, inst/doc/sto.Rnw, man/timematch.Rd, tests/Examples, tests/Examples/spacetime-Ex.Rout.save, tests/basic.Rout.save, tests/stconstruct.Rout.save: found the MATCH error: zoo needs to have S3method("MATCH", "default") in its NAMESPACE, along with MATCH import and export in spacetime NAMESPACE; else (e.g. with zoo 1.7-9 on CRAN) sto.Rnw (aggregate using aggregate.zoo) will not work without attaching zoo first; so, we now depend on zoo's development version... 2012-11-12 08:27 EdzerPebesma * NAMESPACE, R/ST-methods.R, R/aggregate.R, R/timematch.R, inst/doc/sto.Rnw, tests/basic.Rout.save, tests/over.R, tests/over.Rout.save, tests/stconstruct.Rout.save, tests/wind.R, tests/wind.Rout.save: further NAMESPACE import limitation; but aggregate still needs zoo to be attached. 2012-11-11 15:03 EdzerPebesma * DESCRIPTION, NAMESPACE, R/aggregate.R, data/air.rda, inst/doc/jss816.Rnw, inst/doc/sto.Rnw, man/STSDF-class.Rd, man/unstack.Rd, tests/basic.R, tests/basic.Rout.save, tests/over.R, tests/over.Rout.save, tests/raster.R, tests/raster.Rout.save, tests/stconstruct.R, tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R, tests/wind.Rout.save: reorganized zoo and xts to be in Imports: rather than Depends: (one issue still hangs with zoo needing to be attached before sto.Rnw can run aggregate.zoo) doc files: removed xts() calls when only time steps were passed. 2012-11-10 22:57 EdzerPebesma * DESCRIPTION, R/Class-ST.R, R/ST-methods.R, R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R, R/coerce.R, R/stconstruct.R, R/timematch.R: syncronized tzone of endTime with that of time; version bump. 2012-11-10 16:12 EdzerPebesma * DESCRIPTION, R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R, data/air.rda, inst/doc/jss816.Rnw, man/STLDF-class.Rd, tests/raster.Rout.save, tests/wind.Rout.save: added time zone to rural air data; time zones in various ST methods (as.xts, selection) got lost, now retained; updated tests outputs; version bump 2012-11-05 13:22 EdzerPebesma * man/eof.Rd: limited time steps for example, to reduce run time 2012-11-05 11:43 EdzerPebesma * DESCRIPTION, demo/00Index, demo/trip.R, inst/CITATION, inst/doc/jss816.Rnw, inst/doc/jss816.bib, man/ST-class.Rd, man/STFDF-class.Rd, man/STIDF-class.Rd, man/STLDF-class.Rd, man/STSDF-class.Rd, man/STTDF-class.Rd, man/delta.Rd, man/over.Rd, man/stconstruct.Rd, man/stplot.Rd, man/timematch.Rd, tests/traj.R, tests/traj.Rout.save: update references to JSS paper; its publication corresponds to releasing 1.0-0; removed trip from Suggests:. 2012-10-29 13:13 BenediktGraeler * DESCRIPTION: 2012-10-28 20:10 EdzerPebesma * inst/doc/sto.Rnw: updated information on endTime and intervals. 2012-10-28 18:42 EdzerPebesma * R/raster.R, R/timematch.R: reverted back setClass(); alternative way to keep tzone in augment.with.one() 2012-10-27 20:22 EdzerPebesma * R/STFDF-methods.R, R/STSDF-methods.R, R/raster.R, R/timematch.R, tests/basic.Rout.save, tests/traj.Rout.save: raster: restore setClass for RasterStackBrick, if not loaded before; ST?DF-methods: missing , in as.data.frame method timematch.R: augment.with.one dropped tzone; tests: updated for tzone; coerce STFDF->STSDF->STIDF->STSDF->STFDF no longer identical, as endTime doesn't get set back (further check needed?) 2012-10-26 18:46 EdzerPebesma * R/STFDF-methods.R, R/STSDF-methods.R, R/timematch.R: two bugs caught by Ben Graeler; cosmetic changes to timematch. 2012-10-25 19:41 EdzerPebesma * demo/00Index: added gvis to index 2012-10-24 06:50 EdzerPebesma * demo/gvis.R: added googleVis demos 2012-10-23 05:59 EdzerPebesma * R/raster.R: removed setClass. 2012-10-21 20:33 EdzerPebesma * inst/doc/sto.Rnw: updated references 2012-10-21 09:24 EdzerPebesma * R/ST-methods.R, R/STIDF-methods.R, R/STSDF-methods.R, R/aggregate.R, R/eof.R, R/plot.R, R/stconstruct.R, R/stplot.R: EOF: use prcomp.formula so that na.action gets passed; default xts slot gets named index column; 2012-10-18 13:15 EdzerPebesma * R/stplot.R, man/stplot.Rd: argument mismatch (scales = list(draw=FALSE)) 2012-10-14 10:53 EdzerPebesma * NAMESPACE, R/ST-methods.R, R/coerce.R: dim methods for STT, STx cercion. 2012-10-03 14:56 EdzerPebesma * R/endtime.R, R/stplot.R, inst/doc/jss816.Rnw: added endTime; update to vignette; scales handling in stplot. 2012-09-28 20:48 EdzerPebesma * DESCRIPTION, R/stplot.R, man/stplot.Rd: stplot: correct scales argument if unprojected; DESCRIPTION: dropped removed file. 2012-09-25 21:34 EdzerPebesma * DESCRIPTION, R/Class-STLDF.R, R/STLDF-methods.R, inst/doc/jss816.Rnw, tests/basic.R, tests/over.R, tests/over.Rout.save, tests/traj.R, tests/traj.Rout.save: removed STLDF sources; version bump; tried to make tests clean wrt TZ differences 2012-09-25 08:20 EdzerPebesma * R/STTDF-methods.R: needed for CRAN submission 2012-09-24 19:42 EdzerPebesma * R/tgrass.R: dealt with endTime in writing tgrass files 2012-09-23 18:48 EdzerPebesma * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/Class-STLDF.R, R/ST-methods.R, R/STFDF-methods.R, R/STIDF-methods.R, R/STLDF-methods.R, R/STSDF-methods.R, R/STTDF-methods.R, R/coerce.R, R/eof.R, R/interval.R, R/over.R, R/plot.R, R/raster.R, R/stconstruct.R, R/timematch.R, data/air.rda, inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/jss816.Rnw, inst/doc/move.fig, inst/doc/move.pdf, man/ST-class.Rd, man/STFDF-class.Rd, man/STIDF-class.Rd, man/STLDF-class.Rd, man/STSDF-class.Rd, man/delta.Rd, man/interval.Rd, man/stconstruct.Rd, man/timematch.Rd, tests/basic.Rout.save, tests/over.R, tests/over.Rout.save, tests/raster.Rout.save, tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R, tests/wind.Rout.save: removed STL and STLDF class, added endTime as slot to ST, and tried to deal with all the consequences of having an endTime for each observation. Started integrating the more efficient intervals matching from package "intervals". Updated vignette and docs. 2012-09-12 18:23 EdzerPebesma * DESCRIPTION, R/raster.R, R/tgrass.R: moved tgrass stuff to new file 2012-09-12 15:25 EdzerPebesma * R/ST-methods.R, R/raster.R, man/tgrass.Rd: minor mods to pass check again. 2012-09-12 15:01 EdzerPebesma * man/tgrass.Rd: {read,write}.tgrass doc 2012-09-12 14:28 EdzerPebesma * R/raster.R: removed the "x" before .tif 2012-09-12 14:12 EdzerPebesma * NAMESPACE, R/raster.R: updated {read,write}.tgrass functions 2012-09-11 17:07 EdzerPebesma * R/raster.R: typo 2012-09-07 09:22 EdzerPebesma * DESCRIPTION, R/Class-ST.R, R/Class-STFDF.R, R/Class-STIDF.R, R/Class-STLDF.R, R/Class-STSDF.R, R/Class-STTDF.R, R/ST-methods.R, R/STLDF-methods.R, R/raster.R, tests/basic.R, tests/basic.Rout.save: class validity now checks that attribute names in attributes, space or time are not duplicated. 2012-08-29 06:26 EdzerPebesma * R/stconstruct.R: patch from Ben Graeler, dealing with univariate time-wide data 2012-08-27 07:10 EdzerPebesma * DESCRIPTION, R/aggregate.R, R/over.R, R/timematch.R, man/interval.Rd, man/over.Rd, man/timematch.Rd, tests/traj.Rout.save: split over.R; added links to manual pages; updated Suggests: packages. 2012-08-26 21:07 EdzerPebesma * R/over.R, man/interval.Rd, man/timematch.Rd, tests/over.R, tests/over.Rout.save: added timeMatch for STL objects - irregular time intervals 2012-08-13 15:53 EdzerPebesma * R/over.R: simplified (hopefully) the time over function 2012-08-10 11:41 EdzerPebesma * DESCRIPTION, R/raster.R, man/stplot.Rd, tests/raster.R, tests/raster.Rout.save, tests/traj.Rout.save: added raster conversion functions 2012-07-25 13:40 EdzerPebesma * inst/doc/jss816.Rnw, inst/doc/jss816.bib, inst/doc/spacetime.Rnw, inst/doc/spacetime.bib: name change of vignette. 2012-07-04 16:37 EdzerPebesma * inst/doc/spacetime.Rnw, tests/traj.R, tests/traj.Rout.save, tests/wind.Rout.save: submission of 0.7-1 to CRAN 2012-07-02 07:58 EdzerPebesma * NAMESPACE, R/plot.R, R/stplot.R, inst/doc/move.fig, inst/doc/move.pdf, inst/doc/spacetime.Rnw: new submission to JSS 2012-07-01 22:40 EdzerPebesma * man/STLDF-class.Rd: man page for STLDF 2012-07-01 22:40 EdzerPebesma * inst/doc/move.fig, inst/doc/move.pdf, inst/doc/spacetime.Rnw, inst/doc/spacetime.bib, man/STFDF-class.Rd, man/STIDF-class.Rd, man/STSDF-class.Rd, man/STTDF-class.Rd, man/stplot.Rd: class work; comments from second JSS review 2012-06-19 07:49 EdzerPebesma * R/Class-STLDF.R, R/STLDF-methods.R, R/plot.R, inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/spacetime.Rnw, man/STIDF-class.Rd: more edits to class diagram 2012-06-19 07:08 EdzerPebesma * DESCRIPTION, NAMESPACE, R/Class-STLDF.R, R/ST-methods.R, R/STLDF-methods.R, R/STTDF-methods.R, R/plot.R, R/stplot.R, inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/spacetime.Rnw, inst/doc/spacetime.bib, man/stplot.Rd, tests/traj.R: added STL/STLDF class, and methods; added plot methods 2012-05-31 13:33 EdzerPebesma * man/stplot.Rd, tests/traj.Rout.save: dependent package versions in test; do.repeat argument in docs 2012-05-31 12:56 EdzerPebesma * R/over.R, R/stplot.R: added do.repeat argument to stplot.R 2012-05-29 12:28 EdzerPebesma * DESCRIPTION: updated URL field 2012-05-29 10:27 EdzerPebesma * DESCRIPTION: version / date increase 2012-05-29 10:24 EdzerPebesma * R/stplot.R: cuts argument was not passed to spplot if animate > 0 2012-05-25 13:27 EdzerPebesma * inst/doc/spacetime.Rnw: two minor modifications in section 8. 2012-05-25 08:46 EdzerPebesma * inst/doc/produc.jpg, inst/doc/produc.png: size reduction of bitmap, needed by CRAN 2012-05-24 16:18 EdzerPebesma * R/over.R, inst/doc/sto.Rnw: simplifications to timeMatch; better explanation of interval-interval match in vignette 2012-05-24 07:17 EdzerPebesma * R/interval.R, R/over.R, inst/doc/move.fig, inst/doc/move.pdf, inst/doc/spacetime.Rnw, inst/doc/wind.pdf, inst/doc/windts.pdf, man/over.Rd, man/timematch.Rd, tests/over.R, tests/over.Rout.save: more work getting time intervals work properly, and document this. 2012-05-14 21:31 EdzerPebesma * NAMESPACE, R/Class-ST.R, R/Class-STTDF.R, R/ST-methods.R, R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R, R/interval.R, inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/spacetime.Rnw, man/ST-class.Rd, man/canmove.Rd, man/interval.Rd, tests/basic.Rout.save: got rid of canMove slot, and methods. 2012-05-14 19:31 EdzerPebesma * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R, R/interval.R, data/air.rda, inst/doc/cls.fig, inst/doc/cls.pdf, inst/doc/move.fig, inst/doc/move.pdf, inst/doc/spacetime.Rnw, inst/doc/spacetime.bib, man/ST-class.Rd, man/canmove.Rd, man/stplot.Rd, tests/basic.Rout.save, tests/over.Rout.save, tests/stconstruct.Rout.save, tests/traj.Rout.save, tests/wind.R, tests/wind.Rout.save: added canMove slot to ST; updated class figure; increased version; re-saved air data; added figure and timeIsInterval/canMove to vignette; 2012-05-13 20:49 EdzerPebesma * DESCRIPTION, R/Class-ST.R, R/ST-methods.R, R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R, R/STTDF-methods.R, R/coerce.R, R/stplot.R, inst/doc/spacetime.Rnw, inst/doc/spacetime.bib: further review from JSS; improved support for timeIsInterval. 2012-05-03 15:10 EdzerPebesma * DESCRIPTION: updated date 2012-04-23 13:44 EdzerPebesma * DESCRIPTION, NAMESPACE, R/Class-ST.R, R/ST-methods.R, R/STFDF-methods.R, R/STIDF-methods.R, R/STSDF-methods.R, R/coerce.R, R/interval.R, R/stconstruct.R, man/ST-class.Rd, man/interval.Rd, man/stconstruct.Rd: added timeIsInterval() generic (retrieve, set), which indicates whether time is Interval (TRUE) or Instant (FALSE). 2012-04-21 20:47 EdzerPebesma * R/over.R: got rid of some double loops. 2012-04-09 17:22 EdzerPebesma * DESCRIPTION: version update 2012-04-03 15:53 EdzerPebesma * DESCRIPTION, R/STTDF-methods.R, R/coerce.R, inst/doc/spacetime.Rnw: moved some ST? coercion functions; updated version number; diveMove example change in vignette. module: pkgsrc subject: 'CVS commit: pkgsrc/math/R-spacetime' unixtime: '1358991658' user: wen