---
- branch: MAIN
  date: Mon Jul 31 14:34:18 UTC 2023
  files:
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/DESCR
    pathrev: pkgsrc/biology/rna-star/DESCR@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/Makefile
    pathrev: pkgsrc/biology/rna-star/Makefile@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/PLIST
    pathrev: pkgsrc/biology/rna-star/PLIST@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/distinfo
    pathrev: pkgsrc/biology/rna-star/distinfo@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/patches/patch-Makefile
    pathrev: pkgsrc/biology/rna-star/patches/patch-Makefile@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/patches/patch-SharedMemory.cpp
    pathrev: pkgsrc/biology/rna-star/patches/patch-SharedMemory.cpp@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/patches/patch-SoloBarcode.cpp
    pathrev: pkgsrc/biology/rna-star/patches/patch-SoloBarcode.cpp@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/patches/patch-SuffixArrayFuns.cpp
    pathrev: pkgsrc/biology/rna-star/patches/patch-SuffixArrayFuns.cpp@1.1
    type: added
  - new: '1.1'
    old: '0'
    path: pkgsrc/biology/rna-star/patches/patch-bamSortByCoordinate.cpp
    pathrev: pkgsrc/biology/rna-star/patches/patch-bamSortByCoordinate.cpp@1.1
    type: added
  id: 20230731T143418Z.e9613aa5ed31eb421dcbeb348978725f4ad28fef
  log: |
    biology/rna-star: Spliced Transcripts Align to a Ref

    STAR (Spliced Transcripts Alignment to a Reference) aims to achieve
    accurate alignment of high-throughput RNA-seq data.  STAR is based on
    a previously undescribed RNA-seq alignment algorithm that uses
    sequential maximum mappable seed search in uncompressed suffix arrays
    followed by seed clustering and stitching procedure. STAR outperforms
    other aligners by a factor of >50 in mapping speed, aligning to the
    human genome 550 million 2 x 76 bp paired-end reads per hour on a modest
    12-core server, while at the same time improving alignment sensitivity
    and precision.
  module: pkgsrc
  subject: 'CVS commit: pkgsrc/biology/rna-star'
  unixtime: '1690814058'
  user: bacon