--- - branch: MAIN date: Mon Jan 22 13:50:34 UTC 2024 files: - new: '1.4' old: '1.3' path: pkgsrc/devel/R-renv/Makefile pathrev: pkgsrc/devel/R-renv/Makefile@1.4 type: modified - new: '1.6' old: '1.5' path: pkgsrc/devel/R-renv/distinfo pathrev: pkgsrc/devel/R-renv/distinfo@1.6 type: modified id: 20240122T135034Z.06c2ce6230cc04eaa6ea6b96ef64029200a17b91 log: | (devel/R-renv) Updated 0.17.3 to 1.0.3 # renv 1.0.3 * Fixed an issue where `renv` could warn the project appeared to be out-of-sync when using packages installed without an explicit source recorded. (#1683) * `renv::install()` gains the `exclude` argument, which can be useful when installing a subset of project dependencies. * Fixed an issue where PPM repositories were not appropriately transformed into the correct binary repository in `renv::restore()` when using pak. * `renv::init()` no longer prompts the user for the intended action for projects containing a library with only renv installed. (#1668) * Fixed an issue where non-interactive usages of `renv::init()` could fail with projects containing a DESCRIPTION file. (#1663) * Fixed an issue that could cause code within a project `.Rprofile` to execute before the project had been loaded in RStudio. (#1650) * `renv::snapshot()` and `renv::status()` gain the `dev` argument. This can be used when you'd like to capture package dependencies from the *Suggests* field of your package's DESCRIPTION file. (#1019) # renv 1.0.2 * renv now parses package `NAMESPACE` files for imported dependencies. (#1637) * renv no longer locks the sandbox by default. * Fixed an issue where renv used the wrong library paths when attempting to activate the watchdog. This could cause a 10 second delay when activating the sandbox. # renv 1.0.1 * Fixed an issue where authentication headers could be duplicated when using the `libcurl` download method. (#1605) * `renv::use()` now defaults to setting `isolate = TRUE` when `sandbox = TRUE`. * Fixed an issue where the renv watchdog could fail to load, leading to slowness in activating the sandbox on startup. (#1617) * Fixed an issue where renv did not display warnings / errors from `renv::snapshot()` when `options(renv.verbose = FALSE)` was set. The display of these messages is now controlled via the `renv.caution.verbose` R option. (#1607, #1608) * `renv::load()` now notifies the user if the synchronization check took an excessive amount of time due to the number of files being scanned in the project. (#1573) * `renv::init()` gains the `load` argument, making it possible to initialize a project without explicitly loading it. (#1583) * renv now uses a lock when synchronizing installed packages with the cache. This should help alleviate issues that can arise when multiple R processes are installing and caching packages concurrently. (#1571) * Fixed a regression in parsing expressions within R Markdown chunk options. (#1558) * Fixed an issue that prevented `renv::install()` from functioning when source-only repositories were included. (#1578) * Fixed a logic error in reading `RENV_AUTOLOAD_ENABLED`. (#1580) * `renv::restore()` no longer runs without prompting on load if the library is empty. (#1543) * `renv::repair()` now checks for installed packages which lack a known remote source, and updates their `DESCRIPTION` files if it can infer an appropriate remote source. This typically occurs when a package is installed from local sources, but appears to be maintained or published on a remote repository (e.g. GitHub). This was previously done in `renv::snapshot()`, but we've rolled back that change as the prompting was over-aggressive. (#1574) * `renv::status()` now first reports on uninstalled packages, before reporting on used <-> installed mismatches. (#1538) * When the `RENV_STARTUP_DIAGNOSTICS` environment variable is set to `TRUE`, renv now displays a short diagnostics report after a project's autoloader has been run. This can be useful when diagnosing why renv is slow to load in certain projects. (#1557) * renv now ensures the sandbox is activated on load, for R processes which are launched with the renv sandbox on the library paths. (#1565) * `renv::restore()` no longer erroneously prompts when determining the packages which need to be installed. (#1544) * `renv::update()` now ensures the `prompt` parameter is properly respected during package installation. (#1540) * `renv::activate()` no longer erroneously preserves the previous library paths after restarting the session within RStudio. (#1530) * Use correct spelling of IRkernel package (#1528). * Honor `R_LIBCURL_SSL_REVOKE_BEST_EFFORT` when using an external `curl.exe` binary to download files. (#1624) # renv 1.0.0 ## New features * New `renv::checkout()` installings the latest-available packages from a repository. For example, `renv::checkout(date = "2023-02-08")` will install the packages available on 2023-02-08 from the Posit [Package Manager](https://packagemanager.rstudio.com/) repository. The `actions` argument allows you choose whether a lockfile is generated from the provided repositories ("snapshot"), or whether packages are installed from the provided repositories ("restore"). * `renv::deactivate()` gains a `clean` argument: when `TRUE` it will delete all renv files/directories, leaving the project the way it was found. * `renv::init()` now uses [Posit Public Package Manager](https://packagemanager.posit.co) by default, for new projects where the repositories have not already been configured externally. See the options `renv.config.ppm.enabled`, `renv.config.ppm.default`, and `renv.config.ppm.url` in `?config` for more details (#430). * `renv::lockfile_create()`, `renv::lockfile_read()`, `renv::lockfile_write()` and `renv::lockfile_modify()` provide a small family of functions for interacting with renv lockfiles programmatically (#1438). * Handling of development dependencies has been refined. `renv::snapshot()` and `renv::status()` no longer track development dependencies, while `install()` continues to install them (#1019). `Suggested` packages listed in `DESCRIPTION` files are declared as development dependencies regardless of whether or not they're a "package" project. * MRAN integration is now disabled by default, pending the upcoming shutdown of Microsoft's MRAN service. Users who require binaries of older R packages on Windows + macOS can consider using the instance of CRAN mirrored by the [Posit Public Package Manager](https://packagemanager.posit.co) (#1343). ## Bug fixes and minor improvements * Development versions of renv are now tracked using the Git SHA of the current commit, rather than a version number that's incremented on every change (#1327). This shouldn't have any user facing impact, but makes renv maintenance a little easier. * Fixed an issue causing "restarting interrupted promise evaluation" warnings to be displayed when querying available packages failed. (#1260) * `renv::activate()` uses a three option menu that hopefully make your choices more clear (#1372). * `renv::dependencies()` now discovers R package dependencies inside Jupyter notebooks (#929). * `renv::dependencies()` includes packages used by user profile (`~/.Rprofile`) if `renv::config$user.profile()` is `TRUE`. They are set as development dependencies, which means that they will be installed by `install()` but not recorded in the snapshot. * `renv::dependencies()` only extracts dependencies from text in YAML headers that looks like valid R code (#1288). * `renv::dependencies()` no longer treats `box::use(module/file)` as using package `module` (#1377). * `renv::init()` now prompts the user to select a snapshot type if the project contains a top-level DESCRIPTION file (#1485). * `renv::install(type = "source")` now ensures source repositories are used in projects using [PPM](https://packagemanager.posit.co/). (#927) * `renv::install()` activates Bioconductor repositories when installing a package from a remote (e.g. GitHub) which declares a Bioconductor dependency (via a non-empty 'biocViews' field) (#934). * `renv::install()` respects the project snapshot type, if set. * `renv::install()` now keeps source when installing packages from source (#522). * `renv::install()` now validates that binary packages can be loaded after installation, in a manner similar to source packages (#1275). * `renv::install()` now supports Bioconductor remotes of the form `bioc::/`, for installing packages from a particular version of Bioconductor. Aliases like 'release' and 'devel' are also supported (#1195). * `renv::install()` now requires interactive confirmation that you want to install packages (#587). * `renv::load()` gives a more informative message if a lockfile is present but no packages are installed (#353). * `renv::load()` no longer attempts to query package repositories when checking if a project is synchronized (#812). * `renv::load()` no longer duplicates entries on the `PATH` environment variable (#1095). * `renv::restore()` can now use `pak::pkg_install()` to install packages when `pak` integration is enabled. Set `RENV_CONFIG_PAK_ENABLED = TRUE` in your project's `.Renviron` if you'd like to opt-in to this behavior. Note that this requires a nightly build of `pak` (>= 0.4.0-9000); see https://pak.r-lib.org/dev/reference/install.html for more details. * `renv::restore()` now emits an error if called within a project that does not contain a lockfile (#1474). * `renv::restore()` correctly restores packages downloaded and installed from [r-universe](https://r-universe.dev/) (#1359). * `renv::snapshot()` now standardises pak metadata so CRAN packages installed via pak look the same as CRAN packages installed with renv or `install.packages()` (#1239). * If `renv::snapshot()` finds missing packages, a new prompt allows you to install them before continuing (#1198). * `renv::snapshot()` no longer requires confirmation when writing the first snapshot, since that's an action that can easily be undone (by deleting `renv.lock`) (#1281). * `renv::snapshot()` reports if the R version changes, even if no packages change (#962). * `renv::snapshot(exclude = <...>)` no longer warns when attempting to exclude a package that is not installed (#1396). * `renv::status()` now uses a more compact display when packages have some inconsistent combination of being installed, used, and recorded. * `renv::status()` now works more like `renv::restore()` when package versions are different (#675). * `renv::update()` can now update packages installed from GitLab (#136) and BitBucket (#1194). * `renv::settings$package.dependency.fields()` now only affects packages installed directly by the user, not downstream dependencies of those packages. * renv functions give a clearer error if `renv.lock` has somehow become corrupted (#1027). module: pkgsrc subject: 'CVS commit: pkgsrc/devel/R-renv' unixtime: '1705931434' user: mef