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Date: Sat, 27 Oct 2012 08:54:49 +0000
From: "Aleksej Saushev" <asau@netbsd.org>
Subject: CVS commit: pkgsrc/devel
To: pkgsrc-changes@NetBSD.org
Reply-To: asau@netbsd.org
Message-Id: <20121027085449.2A0EF175DD@cvs.netbsd.org>
Sender: pkgsrc-changes-owner@NetBSD.org
Precedence: bulk

Module Name:	pkgsrc
Committed By:	asau
Date:		Sat Oct 27 08:54:48 UTC 2012

Modified Files:
	pkgsrc/devel/hdf5: Makefile.common PLIST distinfo
Added Files:
	pkgsrc/devel/hdf5/patches: patch-tools_h5copy_testh5copy.sh
	    patch-tools_h5diff_testh5diff.sh
	    patch-tools_h5dump_testh5dump.sh.in
	    patch-tools_h5import_h5importtestutil.sh
	    patch-tools_h5jam_testh5jam.sh.in patch-tools_h5ls_testh5ls.sh.in
	    patch-tools_h5repack_h5repack.sh.in
	    patch-tools_h5stat_testh5stat.sh.in
Removed Files:
	pkgsrc/devel/hdf5-c++: distinfo

Log Message:
Update to HDF5 1.8.9
This doesn't pass self-tests, but it isn't regression,
previous package didn't pass them as well.
(While here, make both packages share the same distinfo.)

Changes in HDF5 1.8.9

HDF5 1.8.9 is a minor release, but contains several important
new features and bug fixes. Changes in this release include the
following:

  * Committed datatypes can now be merged when copying objects,
    using the new flag H5O_COPY_MERGE_COMMITTED_DTYPE_FLAG.
    Several new API routines have been included in support of
    this feature.

  * A file in memory can now be accessed in the same way as a
    file on disk. New APIs were added to support this feature.

  * Many changes to the tools have been made, including the following:

      + The h5repack performance has been improved dramatically
        for large chunked datasets.

      + The -S (or --summary) option was added to h5stat to
        display a summary of the file space usage for a file.

      + A wildcard can now be used with h5dump to specify multiple files.

  * H5LTpath_valid was added to determine if a path is correct
    and a link resolves to a valid object.

  * The Fortran counterpart to H5Ocopy, h5ocopy_f, was added.

This release contains many other changes and bug fixes not listed here.
Please be sure to read the Release Notes for a comprehensive
list of new features and bug fixes.

Changes in HDF5 1.8.8

HDF5 1.8.8 is a minor release, but contains a few important new
features and bug fixes. Changes in this release include the
following:

  * Changes to the Fortran interface:
      + Fortran wrappers for the Dimension Scales APIs were added.
        For the new subroutine signatures, see:

           http://www.hdfgroup.org/HDF5/doc/HL/RM_H5DS.html

      + The Fortran interface now uses the Fortran 2003 standard,
        enabling a wider set of Fortran and HDF5 datatypes to be
        supported, including:

          o Any kind of INTEGER or REAL
          o Fortran derived types
          o Fortran and HDF5 enumeration
          o HDF5 variable-length datatypes
          o HDF5 compound datatypes of any complexity

        It also contains new subroutines corresponding to those
        C APIs which have callback functions as parameters.
	For a general overview and information on how to enable
        these new Fortran features, please see the following paper:

           http://www.hdfgroup.org/HDF5/doc/fortran/NewFeatures_F2003.pdf

        HDF5 examples that use Fortran 2003 (with the suffix "F03") can be found here:

           http://www.hdfgroup.org/ftp/HDF5/examples/examples-by-api/api18-fortran.html

        The --enable-fortran2003 configure flag was added to
        enable Fortran 2003 support in the HDF5 Fortran library.
        This flag should be used along with the --enable-fortran
        flag and takes affect only when a Fortran compiler is
        Fortran 2003 compliant.

  * H5Tcreate now supports a string type (fixed-length and variable-length).

  * New APIs, H5Pget_mpio_actual_chunk_opt_mode and H5Pget_mpio_actual_io_mode,
    were added for querying whether/how a collective I/O operation completed.

  * Numerous changes were made to the tools (h5diff, h5repack, h5jam, h5dump).


To generate a diff of this commit:
cvs rdiff -u -r1.2 -r1.3 pkgsrc/devel/hdf5/Makefile.common
cvs rdiff -u -r1.20 -r1.21 pkgsrc/devel/hdf5/PLIST
cvs rdiff -u -r1.27 -r1.28 pkgsrc/devel/hdf5/distinfo
cvs rdiff -u -r1.1.1.1 -r0 pkgsrc/devel/hdf5-c++/distinfo
cvs rdiff -u -r0 -r1.1 \
    pkgsrc/devel/hdf5/patches/patch-tools_h5copy_testh5copy.sh \
    pkgsrc/devel/hdf5/patches/patch-tools_h5diff_testh5diff.sh \
    pkgsrc/devel/hdf5/patches/patch-tools_h5dump_testh5dump.sh.in \
    pkgsrc/devel/hdf5/patches/patch-tools_h5import_h5importtestutil.sh \
    pkgsrc/devel/hdf5/patches/patch-tools_h5jam_testh5jam.sh.in \
    pkgsrc/devel/hdf5/patches/patch-tools_h5ls_testh5ls.sh.in \
    pkgsrc/devel/hdf5/patches/patch-tools_h5repack_h5repack.sh.in \
    pkgsrc/devel/hdf5/patches/patch-tools_h5stat_testh5stat.sh.in

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.