Received: from mail.netbsd.org (mail.netbsd.org [199.233.217.200]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mail.netbsd.org", Issuer "Postmaster NetBSD.org" (verified OK)) by mollari.NetBSD.org (Postfix) with ESMTPS id C05A67A13F for ; Sun, 24 Jul 2016 21:21:15 +0000 (UTC) Received: by mail.netbsd.org (Postfix, from userid 605) id 0A58B85E7D; Sun, 24 Jul 2016 21:21:15 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 8EDC585E75 for ; Sun, 24 Jul 2016 21:21:14 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([IPv6:::1]) by localhost (mail.netbsd.org [IPv6:::1]) (amavisd-new, port 10025) with ESMTP id VQmObXijfUjT for ; Sun, 24 Jul 2016 21:21:13 +0000 (UTC) Received: from cvs.NetBSD.org (unknown [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id CF35F84CBD for ; Sun, 24 Jul 2016 21:21:13 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id C5E07FBB5; Sun, 24 Jul 2016 21:21:13 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1469395273225060" MIME-Version: 1.0 Date: Sun, 24 Jul 2016 21:21:13 +0000 From: "Roland Illig" Subject: CVS commit: pkgsrc/biology/sewer To: pkgsrc-changes@NetBSD.org Reply-To: rillig@netbsd.org X-Mailer: log_accum Message-Id: <20160724212113.C5E07FBB5@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: pkgsrc-changes.NetBSD.org Precedence: bulk This is a multi-part message in MIME format. --_----------=_1469395273225060 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: rillig Date: Sun Jul 24 21:21:13 UTC 2016 Modified Files: pkgsrc/biology/sewer: MESSAGE Makefile PLIST Log Message: Moved documentation to share/doc/$(PKGBASE). Bumped PKGREVISION. To generate a diff of this commit: cvs rdiff -u -r1.1.1.1 -r1.2 pkgsrc/biology/sewer/MESSAGE cvs rdiff -u -r1.10 -r1.11 pkgsrc/biology/sewer/Makefile cvs rdiff -u -r1.2 -r1.3 pkgsrc/biology/sewer/PLIST Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1469395273225060 Content-Disposition: inline Content-Length: 7462 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/biology/sewer/MESSAGE diff -u pkgsrc/biology/sewer/MESSAGE:1.1.1.1 pkgsrc/biology/sewer/MESSAGE:1.2 --- pkgsrc/biology/sewer/MESSAGE:1.1.1.1 Sat Sep 27 23:36:34 2003 +++ pkgsrc/biology/sewer/MESSAGE Sun Jul 24 21:21:13 2016 @@ -1,7 +1,7 @@ =========================================================================== -$NetBSD: MESSAGE,v 1.1.1.1 2003/09/27 23:36:34 jschauma Exp $ +$NetBSD: MESSAGE,v 1.2 2016/07/24 21:21:13 rillig Exp $ The index.html page for SeWeR is located at: - ${PREFIX}/share/doc/html/sewer/ + ${PREFIX}/share/doc/sewer/ =========================================================================== Index: pkgsrc/biology/sewer/Makefile diff -u pkgsrc/biology/sewer/Makefile:1.10 pkgsrc/biology/sewer/Makefile:1.11 --- pkgsrc/biology/sewer/Makefile:1.10 Thu Oct 9 14:06:01 2014 +++ pkgsrc/biology/sewer/Makefile Sun Jul 24 21:21:13 2016 @@ -1,8 +1,8 @@ -# $NetBSD: Makefile,v 1.10 2014/10/09 14:06:01 wiz Exp $ +# $NetBSD: Makefile,v 1.11 2016/07/24 21:21:13 rillig Exp $ DISTNAME= sewer PKGNAME= sewer-2.6 -PKGREVISION= 1 +PKGREVISION= 2 CATEGORIES= biology MASTER_SITES= ftp://iubio.bio.indiana.edu/molbio/analyze/ EXTRACT_SUFX= .zip @@ -11,23 +11,17 @@ MAINTAINER= hdp@cs.nmsu.edu HOMEPAGE= http://iubio.bio.indiana.edu/webapps/SeWeR/ COMMENT= SEquence Analysis using WEb Resources -USE_TOOLS+= pax - +USE_TOOLS+= pax NO_CONFIGURE= YES NO_BUILD= YES - WRKSRC= ${WRKDIR} +AUTO_MKDIRS= yes pre-install: -.for goner in readme.txt* CVS images/CVS styles/CVS scripts/CVS - ${RM} -fr ${WRKDIR}/${goner} -.endfor + cd ${WRKSRC} && ${RM} -fr readme.txt* CVS */CVS do-install: - ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/html/sewer - cd ${WRKDIR} && pax -rw [a-z]* \ - ${DESTDIR}${PREFIX}/share/doc/html/sewer/ - cd ${DESTDIR}${PREFIX}/share/doc/html/sewer && \ - ${LN} -s sewer.htm index.html + cd ${WRKSRC} && pax -rw [a-z]* ${DESTDIR}${PREFIX}/share/doc/sewer/ + ${LN} -s sewer.htm ${DESTDIR}${PREFIX}/share/doc/sewer/index.html .include "../../mk/bsd.pkg.mk" Index: pkgsrc/biology/sewer/PLIST diff -u pkgsrc/biology/sewer/PLIST:1.2 pkgsrc/biology/sewer/PLIST:1.3 --- pkgsrc/biology/sewer/PLIST:1.2 Sun Jun 14 17:34:35 2009 +++ pkgsrc/biology/sewer/PLIST Sun Jul 24 21:21:13 2016 @@ -1,68 +1,68 @@ -@comment $NetBSD: PLIST,v 1.2 2009/06/14 17:34:35 joerg Exp $ -share/doc/html/sewer/index.html -share/doc/html/sewer/align.htm -share/doc/html/sewer/bookmarklet.htm -share/doc/html/sewer/copyright.htm -share/doc/html/sewer/custom.htm -share/doc/html/sewer/customresult.htm -share/doc/html/sewer/database.htm -share/doc/html/sewer/home.htm -share/doc/html/sewer/images/align.png -share/doc/html/sewer/images/align1.png -share/doc/html/sewer/images/alignment.png -share/doc/html/sewer/images/arrow_red.png -share/doc/html/sewer/images/bookmarkhead.png -share/doc/html/sewer/images/bookmarklet.png -share/doc/html/sewer/images/bookmarklet1.png -share/doc/html/sewer/images/clear.png -share/doc/html/sewer/images/custom.png -share/doc/html/sewer/images/custom1.png -share/doc/html/sewer/images/customize.png -share/doc/html/sewer/images/database.png -share/doc/html/sewer/images/database1.png -share/doc/html/sewer/images/databasearch.png -share/doc/html/sewer/images/dnaseqana.png -share/doc/html/sewer/images/download.png -share/doc/html/sewer/images/help.png -share/doc/html/sewer/images/home.png -share/doc/html/sewer/images/home1.png -share/doc/html/sewer/images/mirror_header.png -share/doc/html/sewer/images/mirrors.png -share/doc/html/sewer/images/more_grey.png -share/doc/html/sewer/images/nucacidhead.png -share/doc/html/sewer/images/nucleic.png -share/doc/html/sewer/images/nucleic1.png -share/doc/html/sewer/images/optionoff.png -share/doc/html/sewer/images/optionon.png -share/doc/html/sewer/images/pcr.png -share/doc/html/sewer/images/pcr1.png -share/doc/html/sewer/images/pcrandrelated.png -share/doc/html/sewer/images/progselect.png -share/doc/html/sewer/images/protein.png -share/doc/html/sewer/images/protein1.png -share/doc/html/sewer/images/proteinhead.png -share/doc/html/sewer/images/query.png -share/doc/html/sewer/images/question.png -share/doc/html/sewer/images/redear.png -share/doc/html/sewer/images/savvylogosmall.png -share/doc/html/sewer/images/selectall.png -share/doc/html/sewer/images/sewer_logo_small.png -share/doc/html/sewer/images/sewergraphics.png -share/doc/html/sewer/images/submit.png -share/doc/html/sewer/images/tools.png -share/doc/html/sewer/images/tools1.png -share/doc/html/sewer/images/toolshead.png -share/doc/html/sewer/mirror.htm -share/doc/html/sewer/nav.htm -share/doc/html/sewer/nucleicacid.htm -share/doc/html/sewer/pcr.htm -share/doc/html/sewer/protein.htm -share/doc/html/sewer/scripts/browser.js -share/doc/html/sewer/scripts/sewer.js -share/doc/html/sewer/sewer.htm -share/doc/html/sewer/sewer_tools.htm -share/doc/html/sewer/styles/mac.css -share/doc/html/sewer/styles/unix.css -share/doc/html/sewer/styles/winie.css -share/doc/html/sewer/styles/winns.css -share/doc/html/sewer/tools.htm +@comment $NetBSD: PLIST,v 1.3 2016/07/24 21:21:13 rillig Exp $ +share/doc/sewer/index.html +share/doc/sewer/align.htm +share/doc/sewer/bookmarklet.htm +share/doc/sewer/copyright.htm +share/doc/sewer/custom.htm +share/doc/sewer/customresult.htm +share/doc/sewer/database.htm +share/doc/sewer/home.htm +share/doc/sewer/images/align.png +share/doc/sewer/images/align1.png +share/doc/sewer/images/alignment.png +share/doc/sewer/images/arrow_red.png +share/doc/sewer/images/bookmarkhead.png +share/doc/sewer/images/bookmarklet.png +share/doc/sewer/images/bookmarklet1.png +share/doc/sewer/images/clear.png +share/doc/sewer/images/custom.png +share/doc/sewer/images/custom1.png +share/doc/sewer/images/customize.png +share/doc/sewer/images/database.png +share/doc/sewer/images/database1.png +share/doc/sewer/images/databasearch.png +share/doc/sewer/images/dnaseqana.png +share/doc/sewer/images/download.png +share/doc/sewer/images/help.png +share/doc/sewer/images/home.png +share/doc/sewer/images/home1.png +share/doc/sewer/images/mirror_header.png +share/doc/sewer/images/mirrors.png +share/doc/sewer/images/more_grey.png +share/doc/sewer/images/nucacidhead.png +share/doc/sewer/images/nucleic.png +share/doc/sewer/images/nucleic1.png +share/doc/sewer/images/optionoff.png +share/doc/sewer/images/optionon.png +share/doc/sewer/images/pcr.png +share/doc/sewer/images/pcr1.png +share/doc/sewer/images/pcrandrelated.png +share/doc/sewer/images/progselect.png +share/doc/sewer/images/protein.png +share/doc/sewer/images/protein1.png +share/doc/sewer/images/proteinhead.png +share/doc/sewer/images/query.png +share/doc/sewer/images/question.png +share/doc/sewer/images/redear.png +share/doc/sewer/images/savvylogosmall.png +share/doc/sewer/images/selectall.png +share/doc/sewer/images/sewer_logo_small.png +share/doc/sewer/images/sewergraphics.png +share/doc/sewer/images/submit.png +share/doc/sewer/images/tools.png +share/doc/sewer/images/tools1.png +share/doc/sewer/images/toolshead.png +share/doc/sewer/mirror.htm +share/doc/sewer/nav.htm +share/doc/sewer/nucleicacid.htm +share/doc/sewer/pcr.htm +share/doc/sewer/protein.htm +share/doc/sewer/scripts/browser.js +share/doc/sewer/scripts/sewer.js +share/doc/sewer/sewer.htm +share/doc/sewer/sewer_tools.htm +share/doc/sewer/styles/mac.css +share/doc/sewer/styles/unix.css +share/doc/sewer/styles/winie.css +share/doc/sewer/styles/winns.css +share/doc/sewer/tools.htm 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