Received: from mail.netbsd.org (mail.netbsd.org [199.233.217.200]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mail.netbsd.org", Issuer "Postmaster NetBSD.org" (verified OK)) by mollari.NetBSD.org (Postfix) with ESMTPS id 055687A106 for ; Sun, 7 Aug 2016 10:36:46 +0000 (UTC) Received: by mail.netbsd.org (Postfix, from userid 605) id AB09185ECD; Sun, 7 Aug 2016 10:36:45 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 38D1185E62 for ; Sun, 7 Aug 2016 10:36:45 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([IPv6:::1]) by localhost (mail.netbsd.org [IPv6:::1]) (amavisd-new, port 10025) with ESMTP id E4WDGgOn77Cz for ; Sun, 7 Aug 2016 10:36:44 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.netbsd.org [199.233.217.197]) by mail.netbsd.org (Postfix) with ESMTP id 2D6F584CF5 for ; Sun, 7 Aug 2016 10:36:44 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 28458FBC3; Sun, 7 Aug 2016 10:36:44 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1470566204295810" MIME-Version: 1.0 Date: Sun, 7 Aug 2016 10:36:44 +0000 From: "Wen Heping" Subject: CVS commit: pkgsrc/geography/py-obspy To: pkgsrc-changes@NetBSD.org Reply-To: wen@netbsd.org X-Mailer: log_accum Message-Id: <20160807103644.28458FBC3@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: pkgsrc-changes.NetBSD.org Precedence: bulk This is a multi-part message in MIME format. --_----------=_1470566204295810 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: wen Date: Sun Aug 7 10:36:44 UTC 2016 Modified Files: pkgsrc/geography/py-obspy: Makefile PLIST distinfo Log Message: Update to 1.0.2 Upstream changes: 1.0.2: (doi: 10.5281/zenodo.49636) - obspy.core: * Added workaround for numpy issue where many FFTs of various lengths fill a cache that never gets cleared, effectively creating a memory leak (see #1424). * Trace.filter and Stream.filter don't work on masked arrays anymore because it produced unpredictable results due to the un-initialized data-chunk. The uninitialized masked gap is now also initialized to np.nan in case of floating point data which and a consistent fill value in case of integer data. (see #1363) - obspy.clients.fdsn: * Fixing issue with location codes potentially resulting in unwanted data to be requested. (see #1422) * Included low-gain seismometers in default channel filters in mass-downloader, also included non-oriented channels by default (see #1373). - obspy.db: * Fixed a bug in obspy-indexer command line script (see #1369, command line script was not working, probably since 0.10.0) - obspy.imaging: * Fixed a bug that leads to pressure/tension color blending when plotting semi-transparent DC beachball patches (i.e. with "alpha" not equal to 1, see #1464) * Fixed a bug when plotting non-DC beachball patches without fill colors (i.e. with "nofill=True", see #1464) * Fix arbitrary units in waveform section plot's offset axis, making it possible to add customizations to the plot afterwards (see #1382, see #1383) - obspy.io.ascii: * Fixed a bug that lead to wrong header information in output files when writing non-integer sampling rate data to SLIST or TSPAIR formats (see #1447) - obspy.io.cmtsolution: * Make sure newer CMTSOLUTION files can also be read (see #1479). - obspy.io.gse2: * Fixed a bug that could lead to network code not present in GSE2 output (see #1448) - obspy.io.mseed: * Fixed a bug in obspy-mseed-recordanalyzer (see #1386) - obspy.io.nlloc: * Use geographic coordinates from the NonLinLoc Hypocenter-Phase file if no custom coordinate converter is provided. (see #1390) * Fix reading NonLinLoc Hypocenter-Phase files with more than one hypocenter in it. (see #1480) * Fix reading NonLinLoc Hypocenter-Phase files with unicode characters in them. (see #1483) - obspy.io.quakeml: * Fixed issue with improperly raised warnings when the same file is read twice. (#1376) * Fix writing empty network/station/channel codes in WaveformStreamID objects to QuakeML. (see #1483) - obspy.io.sac: * Try to set SAC distances (dist, az, baz, gcarc) on read, if "lcalda" is true. If "dist" header is found, distances aren't calculated. * SACTrace class returns header values as native Python types instead of NumPy types. * SACTrace.iqual is no longer accepts enumerated string values, but arbitrary integer values. (see #1472) * SACTrace.read now replaces non-ASCII and null-termination characters in string headers with whitespace unless the "debug_strings=True" flag is used. (see #1432) - obspy.io.stationxml: * Always set the number attribute for poles and zeros. (see #1481) - obspy.signal: * PPSD.plot(): fix plotting of percentiles, mode and mean and setting period limits when using "xaxis_frequency=True" (see #1406, #1416) * Work around a bug in SciPy that results in wrong results for bandpass filter when using Nyquist frequency (or higher) as high corner of the passband (see #1451) - obspy.taup: * Fixing path for Pn. (see #1392) To generate a diff of this commit: cvs rdiff -u -r1.5 -r1.6 pkgsrc/geography/py-obspy/Makefile cvs rdiff -u -r1.2 -r1.3 pkgsrc/geography/py-obspy/PLIST cvs rdiff -u -r1.3 -r1.4 pkgsrc/geography/py-obspy/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1470566204295810 Content-Disposition: inline Content-Length: 6469 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/geography/py-obspy/Makefile diff -u pkgsrc/geography/py-obspy/Makefile:1.5 pkgsrc/geography/py-obspy/Makefile:1.6 --- pkgsrc/geography/py-obspy/Makefile:1.5 Sat Jul 16 04:11:55 2016 +++ pkgsrc/geography/py-obspy/Makefile Sun Aug 7 10:36:43 2016 @@ -1,6 +1,6 @@ -# $NetBSD: Makefile,v 1.5 2016/07/16 04:11:55 wen Exp $ +# $NetBSD: Makefile,v 1.6 2016/08/07 10:36:43 wen Exp $ -DISTNAME= obspy-1.0.1 +DISTNAME= obspy-1.0.2 PKGNAME= ${PYPKGPREFIX}-${DISTNAME} CATEGORIES= geography python MASTER_SITES= ${MASTER_SITE_PYPI:=o/obspy/} Index: pkgsrc/geography/py-obspy/PLIST diff -u pkgsrc/geography/py-obspy/PLIST:1.2 pkgsrc/geography/py-obspy/PLIST:1.3 --- pkgsrc/geography/py-obspy/PLIST:1.2 Sat Jul 16 04:11:55 2016 +++ pkgsrc/geography/py-obspy/PLIST Sun Aug 7 10:36:43 2016 @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.2 2016/07/16 04:11:55 wen Exp $ +@comment $NetBSD: PLIST,v 1.3 2016/08/07 10:36:43 wen Exp $ bin/obspy-dataless2resp bin/obspy-dataless2xseed bin/obspy-flinn-engdahl @@ -18,7 +18,6 @@ ${PYSITELIB}/${EGG_FILE}/dependency_link ${PYSITELIB}/${EGG_FILE}/entry_points.txt ${PYSITELIB}/${EGG_FILE}/namespace_packages.txt ${PYSITELIB}/${EGG_FILE}/not-zip-safe -${PYSITELIB}/${EGG_FILE}/pbr.json ${PYSITELIB}/${EGG_FILE}/requires.txt ${PYSITELIB}/${EGG_FILE}/top_level.txt ${PYSITELIB}/obspy/CONTRIBUTORS.txt @@ -350,10 +349,12 @@ ${PYSITELIB}/obspy/core/tests/data/Modif ${PYSITELIB}/obspy/core/tests/data/TM.SKLT..BHZ_faulty_response.xml ${PYSITELIB}/obspy/core/tests/data/XM.05.seed ${PYSITELIB}/obspy/core/tests/data/XM.05.xml +${PYSITELIB}/obspy/core/tests/data/events_longitude_wrap.zmap ${PYSITELIB}/obspy/core/tests/data/iris_events.xml ${PYSITELIB}/obspy/core/tests/data/neries_events.xml ${PYSITELIB}/obspy/core/tests/data/stationxml_BK.CMB.__.LKS.xml ${PYSITELIB}/obspy/core/tests/data/stationxml_IU.ANTO.30.LDO.xml +${PYSITELIB}/obspy/core/tests/data/tarfile_impostor.mseed ${PYSITELIB}/obspy/core/tests/data/test.tar ${PYSITELIB}/obspy/core/tests/data/test.tar.bz2 ${PYSITELIB}/obspy/core/tests/data/test.tar.gz @@ -363,9 +364,11 @@ ${PYSITELIB}/obspy/core/tests/images/bas ${PYSITELIB}/obspy/core/tests/images/catalog-basemap1.png ${PYSITELIB}/obspy/core/tests/images/catalog-basemap2.png ${PYSITELIB}/obspy/core/tests/images/catalog-basemap3.png +${PYSITELIB}/obspy/core/tests/images/catalog-basemap_long-wrap.png ${PYSITELIB}/obspy/core/tests/images/catalog-cartopy1.png ${PYSITELIB}/obspy/core/tests/images/catalog-cartopy2.png ${PYSITELIB}/obspy/core/tests/images/catalog-cartopy3.png +${PYSITELIB}/obspy/core/tests/images/catalog-cartopy_long-wrap.png ${PYSITELIB}/obspy/core/tests/images/channel_response.png ${PYSITELIB}/obspy/core/tests/images/event.png ${PYSITELIB}/obspy/core/tests/images/image.png @@ -618,6 +621,7 @@ ${PYSITELIB}/obspy/imaging/tests/images/ ${PYSITELIB}/obspy/imaging/tests/images/plot_nomerge.png ${PYSITELIB}/obspy/imaging/tests/images/ppsd.png ${PYSITELIB}/obspy/imaging/tests/images/ppsd_cumulative.png +${PYSITELIB}/obspy/imaging/tests/images/ppsd_freq.png ${PYSITELIB}/obspy/imaging/tests/images/scan.png ${PYSITELIB}/obspy/imaging/tests/images/scan_mult_sampl.png ${PYSITELIB}/obspy/imaging/tests/images/scan_times.png @@ -747,6 +751,7 @@ ${PYSITELIB}/obspy/io/cmtsolution/tests/ ${PYSITELIB}/obspy/io/cmtsolution/tests/__init__.pyo ${PYSITELIB}/obspy/io/cmtsolution/tests/data/CMTSOLUTION ${PYSITELIB}/obspy/io/cmtsolution/tests/data/CMTSOLUTION_EXPLOSION +${PYSITELIB}/obspy/io/cmtsolution/tests/data/CMTSOLUTION_NEW ${PYSITELIB}/obspy/io/cmtsolution/tests/data/MULTIPLE_EVENTS ${PYSITELIB}/obspy/io/cmtsolution/tests/test_core.py ${PYSITELIB}/obspy/io/cmtsolution/tests/test_core.pyc @@ -843,6 +848,7 @@ ${PYSITELIB}/obspy/io/gse2/tests/data/GR ${PYSITELIB}/obspy/io/gse2/tests/data/STA2.testlines ${PYSITELIB}/obspy/io/gse2/tests/data/STA2.testlines_out ${PYSITELIB}/obspy/io/gse2/tests/data/acc.gse +${PYSITELIB}/obspy/io/gse2/tests/data/boa___00_07a.gse ${PYSITELIB}/obspy/io/gse2/tests/data/broken_head.gse2 ${PYSITELIB}/obspy/io/gse2/tests/data/loc_RJOB20050831023349.z ${PYSITELIB}/obspy/io/gse2/tests/data/loc_RJOB20050831023349.z.wrong_chksum @@ -1066,8 +1072,11 @@ ${PYSITELIB}/obspy/io/nlloc/tests/data/n ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc.obs ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc.qml ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc.scat +${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_custom.hyp +${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_custom.qml ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_scat.npy ${PYSITELIB}/obspy/io/nlloc/tests/data/nlloc_scat_converted.npy +${PYSITELIB}/obspy/io/nlloc/tests/data/vanua.sum.grid0.loc.hyp ${PYSITELIB}/obspy/io/nlloc/tests/test_core.py ${PYSITELIB}/obspy/io/nlloc/tests/test_core.pyc ${PYSITELIB}/obspy/io/nlloc/tests/test_core.pyo @@ -1167,6 +1176,7 @@ ${PYSITELIB}/obspy/io/sac/tests/data/dis ${PYSITELIB}/obspy/io/sac/tests/data/interpolation_test_interpolated_delta_0.003.sac ${PYSITELIB}/obspy/io/sac/tests/data/interpolation_test_interpolated_delta_0.077.sac ${PYSITELIB}/obspy/io/sac/tests/data/interpolation_test_random_waveform_delta_0.01_npts_50.sac +${PYSITELIB}/obspy/io/sac/tests/data/non_ascii.sac ${PYSITELIB}/obspy/io/sac/tests/data/null_terminated.sac ${PYSITELIB}/obspy/io/sac/tests/data/seism-longer.sac ${PYSITELIB}/obspy/io/sac/tests/data/seism-shorter.sac Index: pkgsrc/geography/py-obspy/distinfo diff -u pkgsrc/geography/py-obspy/distinfo:1.3 pkgsrc/geography/py-obspy/distinfo:1.4 --- pkgsrc/geography/py-obspy/distinfo:1.3 Sat Jul 16 04:11:55 2016 +++ pkgsrc/geography/py-obspy/distinfo Sun Aug 7 10:36:43 2016 @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.3 2016/07/16 04:11:55 wen Exp $ +$NetBSD: distinfo,v 1.4 2016/08/07 10:36:43 wen Exp $ -SHA1 (obspy-1.0.1.zip) = 7f27dadc9725f01a10f4f3f4e447f92f61aac0d5 -RMD160 (obspy-1.0.1.zip) = 84d961c24a6445d0438200f3c3bbf8b9614eefbc -SHA512 (obspy-1.0.1.zip) = 0c530fb33b293aa7647d4adbfc1f3139afbc7d7d761062b077b8ff038bb1cefcad1c668c2d4385f8455feb641b518fa2ad7f54d95066d6e4c412abc7359401d2 -Size (obspy-1.0.1.zip) = 20118442 bytes +SHA1 (obspy-1.0.2.zip) = 7c43a884c80b90e987d6bd7786fc9092e34272f3 +RMD160 (obspy-1.0.2.zip) = be379d314d9a0fcf05c40c7c99212ee57e646b5a +SHA512 (obspy-1.0.2.zip) = 372d0a694fa200055efcb99b69f9451a778ee236bd2423d126772e0bf8fd91dc924167c4116f7711a47d687117e4790f89552ec365bc2fd49db75fc54701ef22 +Size (obspy-1.0.2.zip) = 22774079 bytes --_----------=_1470566204295810--