Received: by mail.netbsd.org (Postfix, from userid 605) id 8842384D5E; Wed, 14 Aug 2019 14:37:00 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 0F6E484D47 for ; Wed, 14 Aug 2019 14:37:00 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id K6K838vHhNjs for ; Wed, 14 Aug 2019 14:36:59 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.netbsd.org [199.233.217.197]) by mail.netbsd.org (Postfix) with ESMTP id 394B384C8B for ; Wed, 14 Aug 2019 14:36:59 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 32E20FBF4; Wed, 14 Aug 2019 14:36:59 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1565793419205070" MIME-Version: 1.0 Date: Wed, 14 Aug 2019 14:36:59 +0000 From: "Wen Heping" Subject: CVS commit: pkgsrc/math/R To: pkgsrc-changes@NetBSD.org Reply-To: wen@netbsd.org X-Mailer: log_accum Message-Id: <20190814143659.32E20FBF4@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: pkgsrc-changes.NetBSD.org Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1565793419205070 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: wen Date: Wed Aug 14 14:36:59 UTC 2019 Modified Files: pkgsrc/math/R: Makefile distinfo Log Message: Update to 3.6.1 Upstream changes: CHANGES IN R 3.6.1: INSTALLATION on a UNIX-ALIKE: * The default detection of the shell variable libNN is overridden for derivatives of Debian Linux, some of which have started to have a /usr/lib64 directory. (E.g. Ubuntu 19.04.) As before, it can be specified in config.site. UTILITIES: * R CMD config knows the values of AR and RANLIB, often set for LTO builds. DEPRECATED AND DEFUNCT: * The use of a character vector with .Fortran() is formally deprecated and gives a non-portability warning. (It has long been strongly discouraged in 'Writing R Extensions'.) BUG FIXES: * On Windows, GUI package installation via menuInstallPkgs() works again, thanks to Len Weil's and Duncan Murdoch's PR#17556. * R CMD check on data() fixing PR#17558 thanks to Duncan Murdoch. * quasi(*, variance = list(..)) now works more efficiently, and should work in all cases fixing PR#17560. Further, quasi(var = mu(1-mu)) and quasi(var = "mu ^ 3") now work, and quasi(variance = "log(mu)") now gives a correct error message. * Creation of lazy loading database during package installation is again robust to Rprofile changing the current working directory (PR#17559). * boxplot(y ~ f, horizontal=TRUE) now produces correct x- and y-labels. * rbind.data.frame() allows to keep levels from factor columns (PR#17562) via new option factor.exclude. Additionally, it works in one more case with matrix-columns which had been reported on 2017-01-16 by Krzysztof Banas. * Correct messaging in C++ pragma checks in tools code for R CMD check, fixing PR#17566 thanks to Xavier Robin. * print()ing and auto-printing no longer differs for functions with a user defined print.function, thanks to Bill Dunlap's report. * On Windows, writeClipboard(.., format = ) now does correctly pass format to the underlying C code, thanks to a bug report (with patch) by Jenny Bryan. * as.data.frame() treats 1D arrays the same as vectors, PR#17570. * Improvements in smoothEnds(x, *) working with NAs (towards runmed() working in that case, in the next version of R). * vcov(glm(), dispersion = *) works correctly again, fixing PR#17571 thanks to Pavel Krivitsky. * R CMD INSTALL of binary packages on Windows now works also with per-directory locking. * R CMD INSTALL and install.packages() on Windows are now more robust against a locked file in an earlier installation of the package to be installed. The default value of option install.lock on Windows has been changed to TRUE. * On Unix alikes (when readline is active), only expand tilde (~) file names starting with a tilde, instead of almost all tildes. * In R documentation (*.Rd) files, \item [..] is no longer treated specially when rendered in LaTeX and hence pdf, but rather shows the brackets in all cases. To generate a diff of this commit: cvs rdiff -u -r1.201 -r1.202 pkgsrc/math/R/Makefile cvs rdiff -u -r1.84 -r1.85 pkgsrc/math/R/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1565793419205070 Content-Disposition: inline Content-Length: 1680 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/R/Makefile diff -u pkgsrc/math/R/Makefile:1.201 pkgsrc/math/R/Makefile:1.202 --- pkgsrc/math/R/Makefile:1.201 Sun Aug 11 13:21:43 2019 +++ pkgsrc/math/R/Makefile Wed Aug 14 14:36:59 2019 @@ -1,7 +1,6 @@ -# $NetBSD: Makefile,v 1.201 2019/08/11 13:21:43 wiz Exp $ +# $NetBSD: Makefile,v 1.202 2019/08/14 14:36:59 wen Exp $ -DISTNAME= R-3.6.0 -PKGREVISION= 3 +DISTNAME= R-3.6.1 CATEGORIES= math MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-3/} Index: pkgsrc/math/R/distinfo diff -u pkgsrc/math/R/distinfo:1.84 pkgsrc/math/R/distinfo:1.85 --- pkgsrc/math/R/distinfo:1.84 Sun Jun 9 13:39:12 2019 +++ pkgsrc/math/R/distinfo Wed Aug 14 14:36:59 2019 @@ -1,9 +1,9 @@ -$NetBSD: distinfo,v 1.84 2019/06/09 13:39:12 wen Exp $ +$NetBSD: distinfo,v 1.85 2019/08/14 14:36:59 wen Exp $ -SHA1 (R-3.6.0.tar.gz) = c8a1949e763d22ec3b1dbdd251afcb0f1d2d5c76 -RMD160 (R-3.6.0.tar.gz) = 56401ce9f413e07f3ff8afa74fb788484806fb16 -SHA512 (R-3.6.0.tar.gz) = b2e17b909b6387abb964492e2e9370f913295ca7ac99bab0e965c43ed3c4635e27468c326fb2bca3c529b03c731b0170d9e777a194ad4d6c5a983c050223d8c8 -Size (R-3.6.0.tar.gz) = 30449618 bytes +SHA1 (R-3.6.1.tar.gz) = 0041c025561b5622e3dc88cdedf82334620cd3c2 +RMD160 (R-3.6.1.tar.gz) = 0944f67117372acf342251c988d83b83839deccf +SHA512 (R-3.6.1.tar.gz) = fae7d114437c4b5d10fcb2a4265acd707ad2a4810eeb7c11e25caca1d85093a1495c2e13457b4894c1508830ec1b2be95379b7d54007cf3e574c2a9eea28ef80 +Size (R-3.6.1.tar.gz) = 30463021 bytes SHA1 (patch-configure.ac) = 2732e3e0a39ee64ae4cba5c476f4754ecbd14942 SHA1 (patch-m4_R.m4) = 704d5514e10adf0b5217bb71b06f44a612eca6e0 SHA1 (patch-m4_cairo.m4) = a0c4ec68d7d6d3a73a2a24481d0dee8c192bf154 --_----------=_1565793419205070--