Received: by mail.netbsd.org (Postfix, from userid 605) id 6FBC684D41; Sat, 2 May 2020 15:05:31 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id ED57F84D2E for ; Sat, 2 May 2020 15:05:30 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id 39cdgnuksDqC for ; Sat, 2 May 2020 15:05:30 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id 6816084CD8 for ; Sat, 2 May 2020 15:05:30 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 5BC26FB27; Sat, 2 May 2020 15:05:30 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_158843193093530" MIME-Version: 1.0 Date: Sat, 2 May 2020 15:05:30 +0000 From: "Sebastian Wiedenroth" Subject: CVS commit: pkgsrc/biology/openbabel To: pkgsrc-changes@NetBSD.org Reply-To: wiedi@netbsd.org X-Mailer: log_accum Message-Id: <20200502150530.5BC26FB27@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: pkgsrc-changes.NetBSD.org Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_158843193093530 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: wiedi Date: Sat May 2 15:05:30 UTC 2020 Modified Files: pkgsrc/biology/openbabel: Makefile distinfo Added Files: pkgsrc/biology/openbabel: PLIST.SunOS pkgsrc/biology/openbabel/patches: patch-test_addhtest.cpp Log Message: openbabel: fix build on SunOS To generate a diff of this commit: cvs rdiff -u -r1.38 -r1.39 pkgsrc/biology/openbabel/Makefile cvs rdiff -u -r0 -r1.3 pkgsrc/biology/openbabel/PLIST.SunOS cvs rdiff -u -r1.9 -r1.10 pkgsrc/biology/openbabel/distinfo cvs rdiff -u -r0 -r1.1 \ pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_158843193093530 Content-Disposition: inline Content-Length: 2582 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/biology/openbabel/Makefile diff -u pkgsrc/biology/openbabel/Makefile:1.38 pkgsrc/biology/openbabel/Makefile:1.39 --- pkgsrc/biology/openbabel/Makefile:1.38 Tue Mar 10 22:09:26 2020 +++ pkgsrc/biology/openbabel/Makefile Sat May 2 15:05:30 2020 @@ -1,9 +1,9 @@ -# $NetBSD: Makefile,v 1.38 2020/03/10 22:09:26 wiz Exp $ +# $NetBSD: Makefile,v 1.39 2020/05/02 15:05:30 wiedi Exp $ # GITHUB_PROJECT= openbabel DISTNAME= openbabel-${RELVERSION:S/-/./g} -PKGREVISION= 3 +PKGREVISION= 4 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=openbabel/} GITHUB_TAG= ${PKGBASE}-${RELVERSION} Index: pkgsrc/biology/openbabel/distinfo diff -u pkgsrc/biology/openbabel/distinfo:1.9 pkgsrc/biology/openbabel/distinfo:1.10 --- pkgsrc/biology/openbabel/distinfo:1.9 Wed Nov 20 18:07:55 2019 +++ pkgsrc/biology/openbabel/distinfo Sat May 2 15:05:30 2020 @@ -1,4 +1,4 @@ -$NetBSD: distinfo,v 1.9 2019/11/20 18:07:55 kamil Exp $ +$NetBSD: distinfo,v 1.10 2020/05/02 15:05:30 wiedi Exp $ SHA1 (openbabel-3.0.0.tar.gz) = 8e1428127f00e39f5f05f58b9b186cd8e50f2486 RMD160 (openbabel-3.0.0.tar.gz) = 333fd2af6dd6e59ca88258c2f228932a728321c6 @@ -8,3 +8,4 @@ SHA1 (patch-doc_CMakeLists.txt) = c4a46f SHA1 (patch-openbabel-3.pc.cmake) = abae8cf74db7d45d340f17e5ef9749b6bafa5a70 SHA1 (patch-src_conformersearch.cpp) = 0f16cc0d0a45e30c6bf00af3b67fac435013a337 SHA1 (patch-src_formats_confabreport.cpp) = d9f81b6dfeff8ce7e94be5fdb375972ca8d422f2 +SHA1 (patch-test_addhtest.cpp) = 995f7b532517ef9cee8ee924181c3103aa6f3b6c Added files: Index: pkgsrc/biology/openbabel/PLIST.SunOS diff -u /dev/null pkgsrc/biology/openbabel/PLIST.SunOS:1.3 --- /dev/null Sat May 2 15:05:30 2020 +++ pkgsrc/biology/openbabel/PLIST.SunOS Sat May 2 15:05:30 2020 @@ -0,0 +1,2 @@ +@comment $NetBSD: PLIST.SunOS,v 1.3 2020/05/02 15:05:30 wiedi Exp $ +lib/openbabel/${PKGVERSION}/xtcformat.so Index: pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp diff -u /dev/null pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp:1.1 --- /dev/null Sat May 2 15:05:30 2020 +++ pkgsrc/biology/openbabel/patches/patch-test_addhtest.cpp Sat May 2 15:05:30 2020 @@ -0,0 +1,17 @@ +$NetBSD: patch-test_addhtest.cpp,v 1.1 2020/05/02 15:05:30 wiedi Exp $ + +Need alloca.h on SunOS + +--- test/addhtest.cpp.orig 2019-10-07 16:39:17.000000000 +0000 ++++ test/addhtest.cpp +@@ -34,6 +34,10 @@ GNU General Public License for more deta + #include + #include + ++#if defined(__sun) ++#include ++#endif ++ + using namespace std; + using namespace OpenBabel; + --_----------=_158843193093530--