Received: by mail.netbsd.org (Postfix, from userid 605) id 10C9184D8E; Thu, 16 Jul 2020 02:22:57 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 8AA1E84D7E for ; Thu, 16 Jul 2020 02:22:56 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id NqrCdxNp8VgM for ; Thu, 16 Jul 2020 02:22:55 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id 9E92284CDF for ; Thu, 16 Jul 2020 02:22:55 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 97792FB28; Thu, 16 Jul 2020 02:22:55 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1594866175167450" MIME-Version: 1.0 Date: Thu, 16 Jul 2020 02:22:55 +0000 From: "Mark Davies" Subject: CVS commit: pkgsrc/math/R To: pkgsrc-changes@NetBSD.org Reply-To: markd@netbsd.org X-Mailer: log_accum Message-Id: <20200716022255.97792FB28@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: pkgsrc-changes.NetBSD.org Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1594866175167450 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: markd Date: Thu Jul 16 02:22:55 UTC 2020 Modified Files: pkgsrc/math/R: Makefile PLIST distinfo Log Message: R: update to 4.0.2 CHANGES IN R 4.0.0: SIGNIFICANT USER-VISIBLE CHANGES: * Packages need to be (re-)installed under this version (4.0.0) of R. * matrix objects now also inherit from class "array", so e.g., class(diag(1)) is c("matrix", "array"). This invalidates code incorrectly assuming that class(matrix_obj)) has length one. S3 methods for class "array" are now dispatched for matrix objects. * There is a new syntax for specifying _raw_ character constants similar to the one used in C++: r"(...)" with ... any character sequence not containing the sequence )". This makes it easier to write strings that contain backslashes or both single and double quotes. For more details see ?Quotes. * R now uses a stringsAsFactors = FALSE default, and hence by default no longer converts strings to factors in calls to data.frame() and read.table(). A large number of packages relied on the previous behaviour and so have needed/will need updating. * The plot() S3 generic function is now in package base rather than package graphics, as it is reasonable to have methods that do not use the graphics package. The generic is currently re-exported from the graphics namespace to allow packages importing it from there to continue working, but this may change in future. Packages which define S4 generics for plot() should be re-installed and package code using such generics from other packages needs to ensure that they are imported rather than rely on their being looked for on the search path (as in a namespace, the base namespace has precedence over the search path). See ${PREFIX}/lib/R/doc/NEWS for full changes. To generate a diff of this commit: cvs rdiff -u -r1.214 -r1.215 pkgsrc/math/R/Makefile cvs rdiff -u -r1.32 -r1.33 pkgsrc/math/R/PLIST cvs rdiff -u -r1.85 -r1.86 pkgsrc/math/R/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1594866175167450 Content-Disposition: inline Content-Length: 7356 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/R/Makefile diff -u pkgsrc/math/R/Makefile:1.214 pkgsrc/math/R/Makefile:1.215 --- pkgsrc/math/R/Makefile:1.214 Fri May 22 10:56:20 2020 +++ pkgsrc/math/R/Makefile Thu Jul 16 02:22:55 2020 @@ -1,9 +1,8 @@ -# $NetBSD: Makefile,v 1.214 2020/05/22 10:56:20 adam Exp $ +# $NetBSD: Makefile,v 1.215 2020/07/16 02:22:55 markd Exp $ -DISTNAME= R-3.6.1 -PKGREVISION= 7 +DISTNAME= R-4.0.2 CATEGORIES= math -MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-3/} +MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-4/} MAINTAINER= pkgsrc-users@NetBSD.org HOMEPAGE= https://www.R-project.org/ @@ -160,7 +159,7 @@ fix-darwin-install-name: .include "../../devel/gettext-lib/buildlink3.mk" .include "../../devel/glib2/buildlink3.mk" .include "../../devel/pango/buildlink3.mk" -.include "../../devel/pcre/buildlink3.mk" +.include "../../devel/pcre2/buildlink3.mk" # uses callback interface .include "../../devel/readline/buildlink3.mk" .include "../../devel/zlib/buildlink3.mk" Index: pkgsrc/math/R/PLIST diff -u pkgsrc/math/R/PLIST:1.32 pkgsrc/math/R/PLIST:1.33 --- pkgsrc/math/R/PLIST:1.32 Sun Jun 9 13:39:12 2019 +++ pkgsrc/math/R/PLIST Thu Jul 16 02:22:55 2020 @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.32 2019/06/09 13:39:12 wen Exp $ +@comment $NetBSD: PLIST,v 1.33 2020/07/16 02:22:55 markd Exp $ bin/R bin/Rscript info/R-FAQ.info.gz @@ -46,11 +46,15 @@ lib/R/doc/NEWS lib/R/doc/NEWS.0 lib/R/doc/NEWS.1 lib/R/doc/NEWS.2 +lib/R/doc/NEWS.2.rds +lib/R/doc/NEWS.3 +lib/R/doc/NEWS.3.rds lib/R/doc/NEWS.pdf lib/R/doc/NEWS.rds lib/R/doc/RESOURCES lib/R/doc/THANKS lib/R/doc/html/NEWS.2.html +lib/R/doc/html/NEWS.3.html lib/R/doc/html/NEWS.html lib/R/doc/html/R.css lib/R/doc/html/Rlogo.pdf @@ -152,6 +156,7 @@ lib/R/library/KernSmooth/libs/KernSmooth lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/fr/LC_MESSAGES/R-KernSmooth.mo +lib/R/library/KernSmooth/po/it/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/ko/LC_MESSAGES/R-KernSmooth.mo lib/R/library/KernSmooth/po/pl/LC_MESSAGES/R-KernSmooth.mo lib/R/library/MASS/CITATION @@ -183,6 +188,7 @@ lib/R/library/MASS/libs/MASS.so lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/fr/LC_MESSAGES/R-MASS.mo +lib/R/library/MASS/po/it/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/ko/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/po/pl/LC_MESSAGES/R-MASS.mo lib/R/library/MASS/scripts/ch01.R @@ -331,6 +337,7 @@ lib/R/library/boot/html/R.css lib/R/library/boot/po/de/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo +lib/R/library/boot/po/it/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/ko/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/pl/LC_MESSAGES/R-boot.mo lib/R/library/boot/po/ru/LC_MESSAGES/R-boot.mo @@ -359,6 +366,7 @@ lib/R/library/class/libs/class.so lib/R/library/class/po/de/LC_MESSAGES/R-class.mo lib/R/library/class/po/en@quot/LC_MESSAGES/R-class.mo lib/R/library/class/po/fr/LC_MESSAGES/R-class.mo +lib/R/library/class/po/it/LC_MESSAGES/R-class.mo lib/R/library/class/po/ko/LC_MESSAGES/R-class.mo lib/R/library/class/po/pl/LC_MESSAGES/R-class.mo lib/R/library/cluster/CITATION @@ -487,6 +495,8 @@ lib/R/library/foreign/po/en@quot/LC_MESS lib/R/library/foreign/po/en@quot/LC_MESSAGES/foreign.mo lib/R/library/foreign/po/fr/LC_MESSAGES/R-foreign.mo lib/R/library/foreign/po/fr/LC_MESSAGES/foreign.mo +lib/R/library/foreign/po/it/LC_MESSAGES/R-foreign.mo +lib/R/library/foreign/po/it/LC_MESSAGES/foreign.mo lib/R/library/foreign/po/pl/LC_MESSAGES/R-foreign.mo lib/R/library/foreign/po/pl/LC_MESSAGES/foreign.mo lib/R/library/grDevices/DESCRIPTION @@ -858,6 +868,7 @@ lib/R/library/nnet/libs/nnet.so lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo +lib/R/library/nnet/po/it/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/ko/LC_MESSAGES/R-nnet.mo lib/R/library/nnet/po/pl/LC_MESSAGES/R-nnet.mo lib/R/library/parallel/DESCRIPTION @@ -953,6 +964,7 @@ lib/R/library/spatial/libs/spatial.so lib/R/library/spatial/po/de/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/en@quot/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/fr/LC_MESSAGES/R-spatial.mo +lib/R/library/spatial/po/it/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/ko/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/po/pl/LC_MESSAGES/R-spatial.mo lib/R/library/spatial/ppdata/agter.dat @@ -1068,6 +1080,9 @@ lib/R/library/survival/data/Rdata.rdx lib/R/library/survival/doc/adjcurve.R lib/R/library/survival/doc/adjcurve.Rnw lib/R/library/survival/doc/adjcurve.pdf +lib/R/library/survival/doc/approximate.R +lib/R/library/survival/doc/approximate.Rnw +lib/R/library/survival/doc/approximate.pdf lib/R/library/survival/doc/compete.R lib/R/library/survival/doc/compete.Rnw lib/R/library/survival/doc/compete.pdf @@ -1075,21 +1090,19 @@ lib/R/library/survival/doc/concordance.R lib/R/library/survival/doc/concordance.Rnw lib/R/library/survival/doc/concordance.pdf lib/R/library/survival/doc/index.html -lib/R/library/survival/doc/multi.R lib/R/library/survival/doc/multi.Rnw lib/R/library/survival/doc/multi.pdf +lib/R/library/survival/doc/other.Rnw +lib/R/library/survival/doc/other.pdf lib/R/library/survival/doc/population.R lib/R/library/survival/doc/population.Rnw lib/R/library/survival/doc/population.pdf -lib/R/library/survival/doc/survival.R -lib/R/library/survival/doc/survival.Rnw -lib/R/library/survival/doc/survival.pdf lib/R/library/survival/doc/splines.R lib/R/library/survival/doc/splines.Rnw lib/R/library/survival/doc/splines.pdf -lib/R/library/survival/doc/tests.R -lib/R/library/survival/doc/tests.Rnw -lib/R/library/survival/doc/tests.pdf +lib/R/library/survival/doc/survival.R +lib/R/library/survival/doc/survival.Rnw +lib/R/library/survival/doc/survival.pdf lib/R/library/survival/doc/tiedtimes.R lib/R/library/survival/doc/tiedtimes.Rnw lib/R/library/survival/doc/tiedtimes.pdf Index: pkgsrc/math/R/distinfo diff -u pkgsrc/math/R/distinfo:1.85 pkgsrc/math/R/distinfo:1.86 --- pkgsrc/math/R/distinfo:1.85 Wed Aug 14 14:36:59 2019 +++ pkgsrc/math/R/distinfo Thu Jul 16 02:22:55 2020 @@ -1,9 +1,9 @@ -$NetBSD: distinfo,v 1.85 2019/08/14 14:36:59 wen Exp $ +$NetBSD: distinfo,v 1.86 2020/07/16 02:22:55 markd Exp $ -SHA1 (R-3.6.1.tar.gz) = 0041c025561b5622e3dc88cdedf82334620cd3c2 -RMD160 (R-3.6.1.tar.gz) = 0944f67117372acf342251c988d83b83839deccf -SHA512 (R-3.6.1.tar.gz) = fae7d114437c4b5d10fcb2a4265acd707ad2a4810eeb7c11e25caca1d85093a1495c2e13457b4894c1508830ec1b2be95379b7d54007cf3e574c2a9eea28ef80 -Size (R-3.6.1.tar.gz) = 30463021 bytes +SHA1 (R-4.0.2.tar.gz) = ee79a57730ed4786c0d6a05bd050d52a5d0290c1 +RMD160 (R-4.0.2.tar.gz) = a323d61573a6fc46a7ce80135348578f0e7b347d +SHA512 (R-4.0.2.tar.gz) = b7330613ee9795f54cde3dd9f7509be83d9156fb8577c17179727ee01450db27704249f68bd48e0331e2df09c2d9833d8bb019c4f9ce9ba669df74650ff2e842 +Size (R-4.0.2.tar.gz) = 33191186 bytes SHA1 (patch-configure.ac) = 2732e3e0a39ee64ae4cba5c476f4754ecbd14942 SHA1 (patch-m4_R.m4) = 704d5514e10adf0b5217bb71b06f44a612eca6e0 SHA1 (patch-m4_cairo.m4) = a0c4ec68d7d6d3a73a2a24481d0dee8c192bf154 --_----------=_1594866175167450--