Received: by mail.netbsd.org (Postfix, from userid 605) id 39BC284D33; Mon, 8 Feb 2021 01:55:25 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 7185584D26 for ; Mon, 8 Feb 2021 01:55:24 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id m6STwakPB16S for ; Mon, 8 Feb 2021 01:55:23 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.netbsd.org [199.233.217.197]) by mail.netbsd.org (Postfix) with ESMTP id C1C2484CDC for ; Mon, 8 Feb 2021 01:55:23 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id B3332FA95; Mon, 8 Feb 2021 01:55:23 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1612749323172340" MIME-Version: 1.0 Date: Mon, 8 Feb 2021 01:55:23 +0000 From: "Jason Bacon" Subject: CVS commit: pkgsrc/biology/py-cutadapt To: pkgsrc-changes@NetBSD.org Reply-To: bacon@netbsd.org X-Mailer: log_accum Message-Id: <20210208015523.B3332FA95@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1612749323172340 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: bacon Date: Mon Feb 8 01:55:23 UTC 2021 Added Files: pkgsrc/biology/py-cutadapt: DESCR Makefile PLIST distinfo Log Message: biology/py-cutadapt: import py38-cutadapt-3.2 Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. To generate a diff of this commit: cvs rdiff -u -r0 -r1.1 pkgsrc/biology/py-cutadapt/DESCR \ pkgsrc/biology/py-cutadapt/Makefile pkgsrc/biology/py-cutadapt/PLIST \ pkgsrc/biology/py-cutadapt/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1612749323172340 Content-Disposition: inline Content-Length: 3782 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Added files: Index: pkgsrc/biology/py-cutadapt/DESCR diff -u /dev/null pkgsrc/biology/py-cutadapt/DESCR:1.1 --- /dev/null Mon Feb 8 01:55:23 2021 +++ pkgsrc/biology/py-cutadapt/DESCR Mon Feb 8 01:55:23 2021 @@ -0,0 +1,2 @@ +Cutadapt finds and removes adapter sequences, primers, poly-A tails and other +types of unwanted sequence from your high-throughput sequencing reads. Index: pkgsrc/biology/py-cutadapt/Makefile diff -u /dev/null pkgsrc/biology/py-cutadapt/Makefile:1.1 --- /dev/null Mon Feb 8 01:55:23 2021 +++ pkgsrc/biology/py-cutadapt/Makefile Mon Feb 8 01:55:23 2021 @@ -0,0 +1,19 @@ +# $NetBSD: Makefile,v 1.1 2021/02/08 01:55:23 bacon Exp $ + +DISTNAME= cutadapt-3.2 +PKGNAME= ${PYPKGPREFIX}-${DISTNAME} +CATEGORIES= biology +MASTER_SITES= ${MASTER_SITE_PYPI:=c/cutadapt/} + +MAINTAINER= bacon@NetBSD.org +HOMEPAGE= https://cutadapt.readthedocs.io/en/stable/ +COMMENT= Find and remove adapter sequences, primers, poly-A tails, etc +LICENSE= mit + +DEPENDS+= ${PYPKGPREFIX}-xopen>=1.0.0:../../devel/py-xopen +DEPENDS+= ${PYPKGPREFIX}-dnaio>=0.5.0:../../biology/py-dnaio + +PYTHON_SELF_CONFLICT= yes + +.include "../../lang/python/egg.mk" +.include "../../mk/bsd.pkg.mk" Index: pkgsrc/biology/py-cutadapt/PLIST diff -u /dev/null pkgsrc/biology/py-cutadapt/PLIST:1.1 --- /dev/null Mon Feb 8 01:55:23 2021 +++ pkgsrc/biology/py-cutadapt/PLIST Mon Feb 8 01:55:23 2021 @@ -0,0 +1,49 @@ +@comment $NetBSD: PLIST,v 1.1 2021/02/08 01:55:23 bacon Exp $ +bin/cutadapt +${PYSITELIB}/${EGG_INFODIR}/PKG-INFO +${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt +${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt +${PYSITELIB}/${EGG_INFODIR}/entry_points.txt +${PYSITELIB}/${EGG_INFODIR}/requires.txt +${PYSITELIB}/${EGG_INFODIR}/top_level.txt +${PYSITELIB}/cutadapt/__init__.py +${PYSITELIB}/cutadapt/__init__.pyc +${PYSITELIB}/cutadapt/__init__.pyo +${PYSITELIB}/cutadapt/__main__.py +${PYSITELIB}/cutadapt/__main__.pyc +${PYSITELIB}/cutadapt/__main__.pyo +${PYSITELIB}/cutadapt/_align.so +${PYSITELIB}/cutadapt/_version.py +${PYSITELIB}/cutadapt/_version.pyc +${PYSITELIB}/cutadapt/_version.pyo +${PYSITELIB}/cutadapt/adapters.py +${PYSITELIB}/cutadapt/adapters.pyc +${PYSITELIB}/cutadapt/adapters.pyo +${PYSITELIB}/cutadapt/align.py +${PYSITELIB}/cutadapt/align.pyc +${PYSITELIB}/cutadapt/align.pyo +${PYSITELIB}/cutadapt/filters.py +${PYSITELIB}/cutadapt/filters.pyc +${PYSITELIB}/cutadapt/filters.pyo +${PYSITELIB}/cutadapt/log.py +${PYSITELIB}/cutadapt/log.pyc +${PYSITELIB}/cutadapt/log.pyo +${PYSITELIB}/cutadapt/modifiers.py +${PYSITELIB}/cutadapt/modifiers.pyc +${PYSITELIB}/cutadapt/modifiers.pyo +${PYSITELIB}/cutadapt/parser.py +${PYSITELIB}/cutadapt/parser.pyc +${PYSITELIB}/cutadapt/parser.pyo +${PYSITELIB}/cutadapt/pipeline.py +${PYSITELIB}/cutadapt/pipeline.pyc +${PYSITELIB}/cutadapt/pipeline.pyo +${PYSITELIB}/cutadapt/qualtrim.so +${PYSITELIB}/cutadapt/report.py +${PYSITELIB}/cutadapt/report.pyc +${PYSITELIB}/cutadapt/report.pyo +${PYSITELIB}/cutadapt/tokenizer.py +${PYSITELIB}/cutadapt/tokenizer.pyc +${PYSITELIB}/cutadapt/tokenizer.pyo +${PYSITELIB}/cutadapt/utils.py +${PYSITELIB}/cutadapt/utils.pyc +${PYSITELIB}/cutadapt/utils.pyo Index: pkgsrc/biology/py-cutadapt/distinfo diff -u /dev/null pkgsrc/biology/py-cutadapt/distinfo:1.1 --- /dev/null Mon Feb 8 01:55:23 2021 +++ pkgsrc/biology/py-cutadapt/distinfo Mon Feb 8 01:55:23 2021 @@ -0,0 +1,6 @@ +$NetBSD: distinfo,v 1.1 2021/02/08 01:55:23 bacon Exp $ + +SHA1 (cutadapt-3.2.tar.gz) = 11b2545862c4e9a655a279f951b15558b1617506 +RMD160 (cutadapt-3.2.tar.gz) = e04f8be21e118c760dc03d80544c1d4f7135f985 +SHA512 (cutadapt-3.2.tar.gz) = 97ab1cadc3bd1585012c0aba916b0031d8b13bff1f1894f4548b6f7bfa20b5f2d598c499664d755a81be57e36fd5c712f36df77cfcd1f2b28a4f27990ee0b56c +Size (cutadapt-3.2.tar.gz) = 292702 bytes --_----------=_1612749323172340--