Received: by mail.netbsd.org (Postfix, from userid 605) id 9428D84D9D; Thu, 11 Feb 2021 10:30:57 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id C776B84D9D for ; Thu, 11 Feb 2021 10:30:56 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([IPv6:::1]) by localhost (mail.netbsd.org [IPv6:::1]) (amavisd-new, port 10025) with ESMTP id gjWZkEI38JXL for ; Thu, 11 Feb 2021 10:30:56 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id 3D45284C86 for ; Thu, 11 Feb 2021 10:30:56 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 29B31FA95; Thu, 11 Feb 2021 10:30:56 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1613039456187990" MIME-Version: 1.0 Date: Thu, 11 Feb 2021 10:30:56 +0000 From: "Adam Ciarcinski" Subject: CVS commit: pkgsrc/biology/py-cutadapt To: pkgsrc-changes@NetBSD.org Reply-To: adam@netbsd.org X-Mailer: log_accum Message-Id: <20210211103056.29B31FA95@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1613039456187990 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: adam Date: Thu Feb 11 10:30:56 UTC 2021 Modified Files: pkgsrc/biology/py-cutadapt: Makefile PLIST Added Files: pkgsrc/biology/py-cutadapt: ALTERNATIVES Log Message: py-cutadapt: fix CATEGORY, mark as not for 2.7 and 3.6, use ALTERNATIVES To generate a diff of this commit: cvs rdiff -u -r0 -r1.1 pkgsrc/biology/py-cutadapt/ALTERNATIVES cvs rdiff -u -r1.1 -r1.2 pkgsrc/biology/py-cutadapt/Makefile \ pkgsrc/biology/py-cutadapt/PLIST Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1613039456187990 Content-Disposition: inline Content-Length: 2065 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/biology/py-cutadapt/Makefile diff -u pkgsrc/biology/py-cutadapt/Makefile:1.1 pkgsrc/biology/py-cutadapt/Makefile:1.2 --- pkgsrc/biology/py-cutadapt/Makefile:1.1 Mon Feb 8 01:55:23 2021 +++ pkgsrc/biology/py-cutadapt/Makefile Thu Feb 11 10:30:55 2021 @@ -1,8 +1,8 @@ -# $NetBSD: Makefile,v 1.1 2021/02/08 01:55:23 bacon Exp $ +# $NetBSD: Makefile,v 1.2 2021/02/11 10:30:55 adam Exp $ DISTNAME= cutadapt-3.2 PKGNAME= ${PYPKGPREFIX}-${DISTNAME} -CATEGORIES= biology +CATEGORIES= biology python MASTER_SITES= ${MASTER_SITE_PYPI:=c/cutadapt/} MAINTAINER= bacon@NetBSD.org @@ -10,10 +10,14 @@ HOMEPAGE= https://cutadapt.readthedocs.i COMMENT= Find and remove adapter sequences, primers, poly-A tails, etc LICENSE= mit -DEPENDS+= ${PYPKGPREFIX}-xopen>=1.0.0:../../devel/py-xopen DEPENDS+= ${PYPKGPREFIX}-dnaio>=0.5.0:../../biology/py-dnaio +DEPENDS+= ${PYPKGPREFIX}-xopen>=1.0.0:../../devel/py-xopen + +PYTHON_VERSIONS_INCOMPATIBLE= 27 36 # py-xopen, dataclasses -PYTHON_SELF_CONFLICT= yes +post-install: + cd ${DESTDIR}${PREFIX}/bin && \ + ${MV} cutadapt cutadapt-${PYVERSSUFFIX} || ${TRUE} .include "../../lang/python/egg.mk" .include "../../mk/bsd.pkg.mk" Index: pkgsrc/biology/py-cutadapt/PLIST diff -u pkgsrc/biology/py-cutadapt/PLIST:1.1 pkgsrc/biology/py-cutadapt/PLIST:1.2 --- pkgsrc/biology/py-cutadapt/PLIST:1.1 Mon Feb 8 01:55:23 2021 +++ pkgsrc/biology/py-cutadapt/PLIST Thu Feb 11 10:30:55 2021 @@ -1,5 +1,5 @@ -@comment $NetBSD: PLIST,v 1.1 2021/02/08 01:55:23 bacon Exp $ -bin/cutadapt +@comment $NetBSD: PLIST,v 1.2 2021/02/11 10:30:55 adam Exp $ +bin/cutadapt-${PYVERSSUFFIX} ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt Added files: Index: pkgsrc/biology/py-cutadapt/ALTERNATIVES diff -u /dev/null pkgsrc/biology/py-cutadapt/ALTERNATIVES:1.1 --- /dev/null Thu Feb 11 10:30:56 2021 +++ pkgsrc/biology/py-cutadapt/ALTERNATIVES Thu Feb 11 10:30:55 2021 @@ -0,0 +1 @@ +bin/cutadapt @PREFIX@/bin/cutadapt-@PYVERSSUFFIX@ --_----------=_1613039456187990--