Received: by mail.netbsd.org (Postfix, from userid 605) id 011A384D7A; Wed, 24 Mar 2021 15:20:10 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 3D0BA84D6A for ; Wed, 24 Mar 2021 15:20:09 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id RdoHJURmPjqV for ; Wed, 24 Mar 2021 15:20:08 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id A067B84CBC for ; Wed, 24 Mar 2021 15:20:08 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 9A2BCFA95; Wed, 24 Mar 2021 15:20:08 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1616599208234760" MIME-Version: 1.0 Date: Wed, 24 Mar 2021 15:20:08 +0000 From: "Jason Bacon" Subject: CVS commit: pkgsrc/biology/biolibc To: pkgsrc-changes@NetBSD.org Reply-To: bacon@netbsd.org X-Mailer: log_accum Message-Id: <20210324152008.9A2BCFA95@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1616599208234760 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: bacon Date: Wed Mar 24 15:20:08 UTC 2021 Added Files: pkgsrc/biology/biolibc: DESCR Makefile PLIST buildlink3.mk distinfo Log Message: biology/biolibc: import biolibc-0.1.1 Biolibc is a library of fast, memory-efficient, low-level functions for processing biological data. Like libc, it consists of numerous disparate, general-purpose functions which could be used by a wide variety of applications. These include functions for streaming common file formats such as SAM and VCF, string functions specific to bioinformatics, etc. To generate a diff of this commit: cvs rdiff -u -r0 -r1.1 pkgsrc/biology/biolibc/DESCR \ pkgsrc/biology/biolibc/Makefile pkgsrc/biology/biolibc/PLIST \ pkgsrc/biology/biolibc/buildlink3.mk pkgsrc/biology/biolibc/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1616599208234760 Content-Disposition: inline Content-Length: 2711 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Added files: Index: pkgsrc/biology/biolibc/DESCR diff -u /dev/null pkgsrc/biology/biolibc/DESCR:1.1 --- /dev/null Wed Mar 24 15:20:08 2021 +++ pkgsrc/biology/biolibc/DESCR Wed Mar 24 15:20:08 2021 @@ -0,0 +1,5 @@ +Biolibc is a library of fast, memory-efficient, low-level functions for +processing biological data. Like libc, it consists of numerous disparate, +general-purpose functions which could be used by a wide variety of +applications. These include functions for streaming common file formats such +as SAM and VCF, string functions specific to bioinformatics, etc. Index: pkgsrc/biology/biolibc/Makefile diff -u /dev/null pkgsrc/biology/biolibc/Makefile:1.1 --- /dev/null Wed Mar 24 15:20:08 2021 +++ pkgsrc/biology/biolibc/Makefile Wed Mar 24 15:20:08 2021 @@ -0,0 +1,12 @@ +# $NetBSD: Makefile,v 1.1 2021/03/24 15:20:08 bacon Exp $ + +DISTNAME= biolibc-0.1.1 +CATEGORIES= biology +MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} + +MAINTAINER= bacon@NetBSD.org +HOMEPAGE= https://github.com/auerlab/biolibc +COMMENT= Low-level high-performance bioinformatics library +LICENSE= 2-clause-bsd + +.include "../../mk/bsd.pkg.mk" Index: pkgsrc/biology/biolibc/PLIST diff -u /dev/null pkgsrc/biology/biolibc/PLIST:1.1 --- /dev/null Wed Mar 24 15:20:08 2021 +++ pkgsrc/biology/biolibc/PLIST Wed Mar 24 15:20:08 2021 @@ -0,0 +1,7 @@ +@comment $NetBSD: PLIST,v 1.1 2021/03/24 15:20:08 bacon Exp $ +include/biostring.h +include/dsvio.h +include/samio.h +include/vcfio.h +lib/libbiolibc.a +man/man1/biolibc.1 Index: pkgsrc/biology/biolibc/buildlink3.mk diff -u /dev/null pkgsrc/biology/biolibc/buildlink3.mk:1.1 --- /dev/null Wed Mar 24 15:20:08 2021 +++ pkgsrc/biology/biolibc/buildlink3.mk Wed Mar 24 15:20:08 2021 @@ -0,0 +1,13 @@ +# $NetBSD: buildlink3.mk,v 1.1 2021/03/24 15:20:08 bacon Exp $ + +BUILDLINK_TREE+= biolibc + +.if !defined(BIOLIBC_BUILDLINK3_MK) +BIOLIBC_BUILDLINK3_MK:= + +BUILDLINK_API_DEPENDS.biolibc+= biolibc>=0.1.1 +BUILDLINK_PKGSRCDIR.biolibc?= ../../biology/biolibc +BUILDLINK_DEPMETHOD.biolibc?= build +.endif # BIOLIBC_BUILDLINK3_MK + +BUILDLINK_TREE+= -biolibc Index: pkgsrc/biology/biolibc/distinfo diff -u /dev/null pkgsrc/biology/biolibc/distinfo:1.1 --- /dev/null Wed Mar 24 15:20:08 2021 +++ pkgsrc/biology/biolibc/distinfo Wed Mar 24 15:20:08 2021 @@ -0,0 +1,6 @@ +$NetBSD: distinfo,v 1.1 2021/03/24 15:20:08 bacon Exp $ + +SHA1 (biolibc-0.1.1.tar.gz) = 7c5861ebfd97dd6d92a489297244debe3c48af05 +RMD160 (biolibc-0.1.1.tar.gz) = 95b9fce0efe0c68be43bea5f875a72efce98f58e +SHA512 (biolibc-0.1.1.tar.gz) = 673fa88ab48bbbcd5d3256a244472fdaa2c76fc5c0fa78663179487f8d8e9c65aaff593220859a54ed6e17f76a080cabe7e5866d12ab3948996e28b0d05d12bc +Size (biolibc-0.1.1.tar.gz) = 11770 bytes --_----------=_1616599208234760--