Received: by mail.netbsd.org (Postfix, from userid 605) id 4D51684D2E; Wed, 24 Mar 2021 18:22:55 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 8651684D2A for ; Wed, 24 Mar 2021 18:22:54 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id SQF7om1QkRPO for ; Wed, 24 Mar 2021 18:22:54 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id 028E284CF1 for ; Wed, 24 Mar 2021 18:22:54 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id F02E2FA95; Wed, 24 Mar 2021 18:22:53 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1616610173297580" MIME-Version: 1.0 Date: Wed, 24 Mar 2021 18:22:53 +0000 From: "Jason Bacon" Subject: CVS commit: pkgsrc/biology/vcf2hap To: pkgsrc-changes@NetBSD.org Reply-To: bacon@netbsd.org X-Mailer: log_accum Message-Id: <20210324182253.F02E2FA95@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1616610173297580 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: bacon Date: Wed Mar 24 18:22:53 UTC 2021 Added Files: pkgsrc/biology/vcf2hap: DESCR Makefile PLIST distinfo Log Message: biology/vcf2hap: import vcf2hap-0.1.2 vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file is required by haplohseq. vcf2hap is extremely fast and requires a trivial amount of memory regardless of the size of the VCF file. To generate a diff of this commit: cvs rdiff -u -r0 -r1.1 pkgsrc/biology/vcf2hap/DESCR \ pkgsrc/biology/vcf2hap/Makefile pkgsrc/biology/vcf2hap/PLIST \ pkgsrc/biology/vcf2hap/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1616610173297580 Content-Disposition: inline Content-Length: 2057 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Added files: Index: pkgsrc/biology/vcf2hap/DESCR diff -u /dev/null pkgsrc/biology/vcf2hap/DESCR:1.1 --- /dev/null Wed Mar 24 18:22:53 2021 +++ pkgsrc/biology/vcf2hap/DESCR Wed Mar 24 18:22:53 2021 @@ -0,0 +1,4 @@ +vcf2hap is a simple tool for generating a .hap file from a VCF. The .hap file +is required by haplohseq. +vcf2hap is extremely fast and requires a trivial amount of memory regardless of +the size of the VCF file. Index: pkgsrc/biology/vcf2hap/Makefile diff -u /dev/null pkgsrc/biology/vcf2hap/Makefile:1.1 --- /dev/null Wed Mar 24 18:22:53 2021 +++ pkgsrc/biology/vcf2hap/Makefile Wed Mar 24 18:22:53 2021 @@ -0,0 +1,19 @@ +# $NetBSD: Makefile,v 1.1 2021/03/24 18:22:53 bacon Exp $ + +DISTNAME= vcf2hap-0.1.2 +CATEGORIES= biology +MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} + +MAINTAINER= bacon@NetBSD.org +HOMEPAGE= https://github.com/auerlab/vcf2hap +COMMENT= Generate .hap file from VCF for haplohseq +LICENSE= 2-clause-bsd + +pre-build: + cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend + +do-test: + cd ${WRKSRC}/Test && ./run-test.sh + +.include "../../biology/biolibc/buildlink3.mk" +.include "../../mk/bsd.pkg.mk" Index: pkgsrc/biology/vcf2hap/PLIST diff -u /dev/null pkgsrc/biology/vcf2hap/PLIST:1.1 --- /dev/null Wed Mar 24 18:22:53 2021 +++ pkgsrc/biology/vcf2hap/PLIST Wed Mar 24 18:22:53 2021 @@ -0,0 +1,3 @@ +@comment $NetBSD: PLIST,v 1.1 2021/03/24 18:22:53 bacon Exp $ +bin/vcf2hap +man/man1/vcf2hap.1 Index: pkgsrc/biology/vcf2hap/distinfo diff -u /dev/null pkgsrc/biology/vcf2hap/distinfo:1.1 --- /dev/null Wed Mar 24 18:22:53 2021 +++ pkgsrc/biology/vcf2hap/distinfo Wed Mar 24 18:22:53 2021 @@ -0,0 +1,6 @@ +$NetBSD: distinfo,v 1.1 2021/03/24 18:22:53 bacon Exp $ + +SHA1 (vcf2hap-0.1.2.tar.gz) = a18bc1746ec4df4be88d635c18b0a6b240d2c309 +RMD160 (vcf2hap-0.1.2.tar.gz) = a7ec7f863888e005b84f59db7c2787ec19e960de +SHA512 (vcf2hap-0.1.2.tar.gz) = 4a4b3c0c63e711f7f9a57706c675bb02f9d55976b6ee3aee1e1d1eeb14f2d92a62ad952e2c03fbe5ab525174b01260b5cb305c9980b48411618bf7e9669ae7f6 +Size (vcf2hap-0.1.2.tar.gz) = 197782 bytes --_----------=_1616610173297580--