Received: by mail.netbsd.org (Postfix, from userid 605) id AFC1F84D44; Mon, 5 Apr 2021 19:26:09 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id EB2CB84D2C for ; Mon, 5 Apr 2021 19:26:08 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id 25NH-QOlh4OF for ; Mon, 5 Apr 2021 19:26:07 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.netbsd.org [199.233.217.197]) by mail.netbsd.org (Postfix) with ESMTP id 9BC3B84D17 for ; Mon, 5 Apr 2021 19:26:07 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 94E0DFA95; Mon, 5 Apr 2021 19:26:07 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1617650767156900" MIME-Version: 1.0 Date: Mon, 5 Apr 2021 19:26:07 +0000 From: "Tobias Nygren" Subject: CVS commit: pkgsrc/math/py-scipy To: pkgsrc-changes@NetBSD.org Reply-To: tnn@netbsd.org X-Mailer: log_accum Message-Id: <20210405192607.94E0DFA95@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1617650767156900 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: tnn Date: Mon Apr 5 19:26:07 UTC 2021 Modified Files: pkgsrc/math/py-scipy: Makefile PLIST distinfo Log Message: py-scipy: update to 1.6.2 Highlights of this release scipy.ndimage improvements: Fixes and ehancements to boundary extension modes for interpolation functions. Support for complex-valued inputs in many filtering and interpolation functions. New grid_mode option for scipy.ndimage.zoom to enable results consistent with scikit-image's rescale. scipy.optimize.linprog has fast, new methods for large, sparse problems from the HiGHS library. scipy.stats improvements including new distributions, a new test, and enhancements to existing distributions and tests Deprecated features scipy.spatial changes Calling KDTree.query with k=None to find all neighbours is deprecated. Use KDTree.query_ball_point instead. distance.wminkowski was deprecated; use distance.minkowski and supply weights with the w keyword instead. Backwards incompatible changes Using scipy.fft as a function aliasing numpy.fft.fft was removed after being deprecated in SciPy 1.4.0. As a result, the scipy.fft submodule must be explicitly imported now, in line with other SciPy subpackages. scipy.signal changes The output of decimate, lfilter_zi, lfiltic, sos2tf, and sosfilt_zi have been changed to match numpy.result_type of their inputs. The window function slepian was removed. The frechet_l and frechet_r distributions were removed. To generate a diff of this commit: cvs rdiff -u -r1.43 -r1.44 pkgsrc/math/py-scipy/Makefile cvs rdiff -u -r1.17 -r1.18 pkgsrc/math/py-scipy/PLIST cvs rdiff -u -r1.22 -r1.23 pkgsrc/math/py-scipy/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1617650767156900 Content-Disposition: inline Content-Length: 13566 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/py-scipy/Makefile diff -u pkgsrc/math/py-scipy/Makefile:1.43 pkgsrc/math/py-scipy/Makefile:1.44 --- pkgsrc/math/py-scipy/Makefile:1.43 Mon Oct 12 21:52:04 2020 +++ pkgsrc/math/py-scipy/Makefile Mon Apr 5 19:26:07 2021 @@ -1,8 +1,7 @@ -# $NetBSD: Makefile,v 1.43 2020/10/12 21:52:04 bacon Exp $ +# $NetBSD: Makefile,v 1.44 2021/04/05 19:26:07 tnn Exp $ -DISTNAME= scipy-1.5.2 +DISTNAME= scipy-1.6.2 PKGNAME= ${PYPKGPREFIX}-${DISTNAME} -PKGREVISION= 1 CATEGORIES= math python MASTER_SITES= ${MASTER_SITE_PYPI:=s/scipy/} @@ -32,7 +31,7 @@ FFLAGS+= -fPIC LDFLAGS.Darwin+= -headerpad_max_install_names -PYTHON_VERSIONS_INCOMPATIBLE= 27 +PYTHON_VERSIONS_INCOMPATIBLE= 36 27 REPLACE_PYTHON+= scipy/sparse/linalg/isolve/tests/test_gcrotmk.py Index: pkgsrc/math/py-scipy/PLIST diff -u pkgsrc/math/py-scipy/PLIST:1.17 pkgsrc/math/py-scipy/PLIST:1.18 --- pkgsrc/math/py-scipy/PLIST:1.17 Tue Aug 4 01:16:19 2020 +++ pkgsrc/math/py-scipy/PLIST Mon Apr 5 19:26:07 2021 @@ -1,12 +1,12 @@ -@comment $NetBSD: PLIST,v 1.17 2020/08/04 01:16:19 tnn Exp $ +@comment $NetBSD: PLIST,v 1.18 2021/04/05 19:26:07 tnn Exp $ ${PYSITELIB}/${EGG_FILE}/PKG-INFO ${PYSITELIB}/${EGG_FILE}/SOURCES.txt ${PYSITELIB}/${EGG_FILE}/dependency_links.txt +${PYSITELIB}/${EGG_FILE}/requires.txt ${PYSITELIB}/${EGG_FILE}/top_level.txt ${PYSITELIB}/scipy/HACKING.rst.txt ${PYSITELIB}/scipy/INSTALL.rst.txt ${PYSITELIB}/scipy/LICENSE.txt -${PYSITELIB}/scipy/THANKS.txt ${PYSITELIB}/scipy/__config__.py ${PYSITELIB}/scipy/__config__.pyc ${PYSITELIB}/scipy/__config__.pyo @@ -29,7 +29,6 @@ ${PYSITELIB}/scipy/_build_utils/system_i ${PYSITELIB}/scipy/_build_utils/system_info.pyc ${PYSITELIB}/scipy/_build_utils/system_info.pyo ${PYSITELIB}/scipy/_build_utils/tests/__init__.py -${PYSITELIB}/scipy/_build_utils/tests/test_circular_imports.py ${PYSITELIB}/scipy/_build_utils/tests/test_scipy_version.py ${PYSITELIB}/scipy/_distributor_init.py ${PYSITELIB}/scipy/_distributor_init.pyc @@ -37,10 +36,16 @@ ${PYSITELIB}/scipy/_distributor_init.pyo ${PYSITELIB}/scipy/_lib/__init__.py ${PYSITELIB}/scipy/_lib/__init__.pyc ${PYSITELIB}/scipy/_lib/__init__.pyo +${PYSITELIB}/scipy/_lib/_bunch.py +${PYSITELIB}/scipy/_lib/_bunch.pyc +${PYSITELIB}/scipy/_lib/_bunch.pyo ${PYSITELIB}/scipy/_lib/_ccallback.py ${PYSITELIB}/scipy/_lib/_ccallback.pyc ${PYSITELIB}/scipy/_lib/_ccallback.pyo ${PYSITELIB}/scipy/_lib/_ccallback_c.so +${PYSITELIB}/scipy/_lib/_disjoint_set.py +${PYSITELIB}/scipy/_lib/_disjoint_set.pyc +${PYSITELIB}/scipy/_lib/_disjoint_set.pyo ${PYSITELIB}/scipy/_lib/_fpumode.so ${PYSITELIB}/scipy/_lib/_gcutils.py ${PYSITELIB}/scipy/_lib/_gcutils.pyc @@ -93,9 +98,11 @@ ${PYSITELIB}/scipy/_lib/tests/test__pep4 ${PYSITELIB}/scipy/_lib/tests/test__testutils.py ${PYSITELIB}/scipy/_lib/tests/test__threadsafety.py ${PYSITELIB}/scipy/_lib/tests/test__util.py +${PYSITELIB}/scipy/_lib/tests/test_bunch.py ${PYSITELIB}/scipy/_lib/tests/test_ccallback.py ${PYSITELIB}/scipy/_lib/tests/test_deprecation.py ${PYSITELIB}/scipy/_lib/tests/test_import_cycles.py +${PYSITELIB}/scipy/_lib/tests/test_linear_assignment.py ${PYSITELIB}/scipy/_lib/tests/test_tmpdirs.py ${PYSITELIB}/scipy/_lib/tests/test_warnings.py ${PYSITELIB}/scipy/_lib/uarray.py @@ -115,6 +122,7 @@ ${PYSITELIB}/scipy/cluster/setup.pyc ${PYSITELIB}/scipy/cluster/setup.pyo ${PYSITELIB}/scipy/cluster/tests/__init__.py ${PYSITELIB}/scipy/cluster/tests/hierarchy_test_data.py +${PYSITELIB}/scipy/cluster/tests/test_disjoint_set.py ${PYSITELIB}/scipy/cluster/tests/test_hierarchy.py ${PYSITELIB}/scipy/cluster/tests/test_vq.py ${PYSITELIB}/scipy/cluster/vq.py @@ -254,6 +262,11 @@ ${PYSITELIB}/scipy/integrate/_ivp/radau. ${PYSITELIB}/scipy/integrate/_ivp/rk.py ${PYSITELIB}/scipy/integrate/_ivp/rk.pyc ${PYSITELIB}/scipy/integrate/_ivp/rk.pyo +${PYSITELIB}/scipy/integrate/_ivp/setup.py +${PYSITELIB}/scipy/integrate/_ivp/setup.pyc +${PYSITELIB}/scipy/integrate/_ivp/setup.pyo +${PYSITELIB}/scipy/integrate/_ivp/tests/test_ivp.py +${PYSITELIB}/scipy/integrate/_ivp/tests/test_rk.py ${PYSITELIB}/scipy/integrate/_ode.py ${PYSITELIB}/scipy/integrate/_ode.pyc ${PYSITELIB}/scipy/integrate/_ode.pyo @@ -370,6 +383,7 @@ ${PYSITELIB}/scipy/io/arff/tests/data/qu ${PYSITELIB}/scipy/io/arff/tests/data/quoted_nominal_spaces.arff ${PYSITELIB}/scipy/io/arff/tests/data/test1.arff ${PYSITELIB}/scipy/io/arff/tests/data/test10.arff +${PYSITELIB}/scipy/io/arff/tests/data/test11.arff ${PYSITELIB}/scipy/io/arff/tests/data/test2.arff ${PYSITELIB}/scipy/io/arff/tests/data/test3.arff ${PYSITELIB}/scipy/io/arff/tests/data/test4.arff @@ -623,13 +637,23 @@ ${PYSITELIB}/scipy/io/tests/data/struct_ ${PYSITELIB}/scipy/io/tests/data/struct_scalars_replicated_3d.sav ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-be.wav ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-2ch-32bit-float-le.wav +${PYSITELIB}/scipy/io/tests/data/test-44100Hz-be-1ch-4bytes.wav ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof-no-data.wav ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-early-eof.wav ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes-incomplete-chunk.wav ${PYSITELIB}/scipy/io/tests/data/test-44100Hz-le-1ch-4bytes.wav ${PYSITELIB}/scipy/io/tests/data/test-48000Hz-2ch-64bit-float-le-wavex.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-be-3ch-5S-24bit.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-1ch-10S-20bit-extra.wav ${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-1ch-1byte-ulaw.wav ${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-2ch-1byteu.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-24bit.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-36bit.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-45bit.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-53bit.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-3ch-5S-64bit.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-4ch-9S-12bit.wav +${PYSITELIB}/scipy/io/tests/data/test-8000Hz-le-5ch-9S-5bit.wav ${PYSITELIB}/scipy/io/tests/data/various_compressed.sav ${PYSITELIB}/scipy/io/tests/test_fortran.py ${PYSITELIB}/scipy/io/tests/test_idl.py @@ -679,6 +703,7 @@ ${PYSITELIB}/scipy/linalg/_matfuncs_inv_ ${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.py ${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyc ${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm.pyo +${PYSITELIB}/scipy/linalg/_matfuncs_sqrtm_triu.so ${PYSITELIB}/scipy/linalg/_procrustes.py ${PYSITELIB}/scipy/linalg/_procrustes.pyc ${PYSITELIB}/scipy/linalg/_procrustes.pyo @@ -765,6 +790,7 @@ ${PYSITELIB}/scipy/linalg/tests/test_fbl ${PYSITELIB}/scipy/linalg/tests/test_interpolative.py ${PYSITELIB}/scipy/linalg/tests/test_lapack.py ${PYSITELIB}/scipy/linalg/tests/test_matfuncs.py +${PYSITELIB}/scipy/linalg/tests/test_matmul_toeplitz.py ${PYSITELIB}/scipy/linalg/tests/test_procrustes.py ${PYSITELIB}/scipy/linalg/tests/test_sketches.py ${PYSITELIB}/scipy/linalg/tests/test_solve_toeplitz.py @@ -793,7 +819,6 @@ ${PYSITELIB}/scipy/ndimage/__init__.py ${PYSITELIB}/scipy/ndimage/__init__.pyc ${PYSITELIB}/scipy/ndimage/__init__.pyo ${PYSITELIB}/scipy/ndimage/_ctest.so -${PYSITELIB}/scipy/ndimage/_ctest_oldapi.so ${PYSITELIB}/scipy/ndimage/_cytest.so ${PYSITELIB}/scipy/ndimage/_nd_image.so ${PYSITELIB}/scipy/ndimage/_ni_docstrings.py @@ -830,10 +855,10 @@ ${PYSITELIB}/scipy/ndimage/tests/dots.pn ${PYSITELIB}/scipy/ndimage/tests/test_c_api.py ${PYSITELIB}/scipy/ndimage/tests/test_datatypes.py ${PYSITELIB}/scipy/ndimage/tests/test_filters.py +${PYSITELIB}/scipy/ndimage/tests/test_fourier.py +${PYSITELIB}/scipy/ndimage/tests/test_interpolation.py ${PYSITELIB}/scipy/ndimage/tests/test_measurements.py ${PYSITELIB}/scipy/ndimage/tests/test_morphology.py -${PYSITELIB}/scipy/ndimage/tests/test_ndimage.py -${PYSITELIB}/scipy/ndimage/tests/test_regression.py ${PYSITELIB}/scipy/ndimage/tests/test_splines.py ${PYSITELIB}/scipy/odr/__init__.py ${PYSITELIB}/scipy/odr/__init__.pyc @@ -879,10 +904,38 @@ ${PYSITELIB}/scipy/optimize/_group_colum ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.py ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyc ${PYSITELIB}/scipy/optimize/_hessian_update_strategy.pyo +${PYSITELIB}/scipy/optimize/_highs/__init__.py +${PYSITELIB}/scipy/optimize/_highs/__init__.pyc +${PYSITELIB}/scipy/optimize/_highs/__init__.pyo +${PYSITELIB}/scipy/optimize/_highs/_highs_constants.so +${PYSITELIB}/scipy/optimize/_highs/_highs_wrapper.so +${PYSITELIB}/scipy/optimize/_highs/_mpswriter.so +${PYSITELIB}/scipy/optimize/_highs/cython/src/HConst.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/Highs.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsIO.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsInfo.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsLp.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsLpUtils.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsMipSolver.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsModelUtils.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsOptions.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsRuntimeOptions.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/HighsStatus.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/SimplexConst.pxd +${PYSITELIB}/scipy/optimize/_highs/cython/src/highs_c_api.pxd +${PYSITELIB}/scipy/optimize/_highs/setup.py +${PYSITELIB}/scipy/optimize/_highs/setup.pyc +${PYSITELIB}/scipy/optimize/_highs/setup.pyo ${PYSITELIB}/scipy/optimize/_lbfgsb.so ${PYSITELIB}/scipy/optimize/_linprog.py ${PYSITELIB}/scipy/optimize/_linprog.pyc ${PYSITELIB}/scipy/optimize/_linprog.pyo +${PYSITELIB}/scipy/optimize/_linprog_doc.py +${PYSITELIB}/scipy/optimize/_linprog_doc.pyc +${PYSITELIB}/scipy/optimize/_linprog_doc.pyo +${PYSITELIB}/scipy/optimize/_linprog_highs.py +${PYSITELIB}/scipy/optimize/_linprog_highs.pyc +${PYSITELIB}/scipy/optimize/_linprog_highs.pyo ${PYSITELIB}/scipy/optimize/_linprog_ip.py ${PYSITELIB}/scipy/optimize/_linprog_ip.pyc ${PYSITELIB}/scipy/optimize/_linprog_ip.pyo @@ -937,6 +990,9 @@ ${PYSITELIB}/scipy/optimize/_nnls.pyo ${PYSITELIB}/scipy/optimize/_numdiff.py ${PYSITELIB}/scipy/optimize/_numdiff.pyc ${PYSITELIB}/scipy/optimize/_numdiff.pyo +${PYSITELIB}/scipy/optimize/_qap.py +${PYSITELIB}/scipy/optimize/_qap.pyc +${PYSITELIB}/scipy/optimize/_qap.pyo ${PYSITELIB}/scipy/optimize/_remove_redundancy.py ${PYSITELIB}/scipy/optimize/_remove_redundancy.pyc ${PYSITELIB}/scipy/optimize/_remove_redundancy.pyo @@ -1084,6 +1140,7 @@ ${PYSITELIB}/scipy/optimize/tests/test_m ${PYSITELIB}/scipy/optimize/tests/test_nnls.py ${PYSITELIB}/scipy/optimize/tests/test_nonlin.py ${PYSITELIB}/scipy/optimize/tests/test_optimize.py +${PYSITELIB}/scipy/optimize/tests/test_quadratic_assignment.py ${PYSITELIB}/scipy/optimize/tests/test_regression.py ${PYSITELIB}/scipy/optimize/tests/test_slsqp.py ${PYSITELIB}/scipy/optimize/tests/test_tnc.py @@ -1160,6 +1217,7 @@ ${PYSITELIB}/scipy/signal/tests/test_fir ${PYSITELIB}/scipy/signal/tests/test_ltisys.py ${PYSITELIB}/scipy/signal/tests/test_max_len_seq.py ${PYSITELIB}/scipy/signal/tests/test_peak_finding.py +${PYSITELIB}/scipy/signal/tests/test_result_type.py ${PYSITELIB}/scipy/signal/tests/test_savitzky_golay.py ${PYSITELIB}/scipy/signal/tests/test_signaltools.py ${PYSITELIB}/scipy/signal/tests/test_spectral.py @@ -1477,9 +1535,7 @@ ${PYSITELIB}/scipy/spatial/transform/_ro ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.py ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyc ${PYSITELIB}/scipy/spatial/transform/_rotation_spline.pyo -${PYSITELIB}/scipy/spatial/transform/rotation.py -${PYSITELIB}/scipy/spatial/transform/rotation.pyc -${PYSITELIB}/scipy/spatial/transform/rotation.pyo +${PYSITELIB}/scipy/spatial/transform/rotation.so ${PYSITELIB}/scipy/spatial/transform/setup.py ${PYSITELIB}/scipy/spatial/transform/setup.pyc ${PYSITELIB}/scipy/spatial/transform/setup.pyo @@ -1719,6 +1775,7 @@ ${PYSITELIB}/scipy/stats/tests/test_disc ${PYSITELIB}/scipy/stats/tests/test_discrete_distns.py ${PYSITELIB}/scipy/stats/tests/test_distributions.py ${PYSITELIB}/scipy/stats/tests/test_fit.py +${PYSITELIB}/scipy/stats/tests/test_hypotests.py ${PYSITELIB}/scipy/stats/tests/test_kdeoth.py ${PYSITELIB}/scipy/stats/tests/test_morestats.py ${PYSITELIB}/scipy/stats/tests/test_mstats_basic.py Index: pkgsrc/math/py-scipy/distinfo diff -u pkgsrc/math/py-scipy/distinfo:1.22 pkgsrc/math/py-scipy/distinfo:1.23 --- pkgsrc/math/py-scipy/distinfo:1.22 Tue Aug 4 01:16:19 2020 +++ pkgsrc/math/py-scipy/distinfo Mon Apr 5 19:26:07 2021 @@ -1,7 +1,7 @@ -$NetBSD: distinfo,v 1.22 2020/08/04 01:16:19 tnn Exp $ +$NetBSD: distinfo,v 1.23 2021/04/05 19:26:07 tnn Exp $ -SHA1 (scipy-1.5.2.tar.gz) = d921aa98f73ea5bc533536df7fa681df52d8b9e2 -RMD160 (scipy-1.5.2.tar.gz) = 84d89d666191a1a2270a03bf4b45b40195615e42 -SHA512 (scipy-1.5.2.tar.gz) = 45463df30a0f6270d9f4cf52235f31607904a6ae1375e12600e7f1ab2d27b1dc25a6211b49dceb71506be22c756890adaf9f81d9e6be7455def86c9caf0dc923 -Size (scipy-1.5.2.tar.gz) = 25423944 bytes +SHA1 (scipy-1.6.2.tar.gz) = 7ef8a684f9feb4fd24d35e87f9d1f69eb6ec793e +RMD160 (scipy-1.6.2.tar.gz) = 9255e87c9b0f16028e65469b477ade7a76a5ec17 +SHA512 (scipy-1.6.2.tar.gz) = 18b03f32e8343c5a6c6148ac0bfd4b5f2cc9ff5f74d5d41761ae9e773d6af8774c7b09a3fcc47122864eccce1dbbc17e9325819885d3fc3ab2baf98e7d3befa4 +Size (scipy-1.6.2.tar.gz) = 27187804 bytes SHA1 (patch-scipy_special___round.h) = bc05a935e6423ce8395450ad3b30e88826939422 --_----------=_1617650767156900--