Received: by mail.netbsd.org (Postfix, from userid 605) id 8BEA284D40; Wed, 11 Aug 2021 09:38:39 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id C4F3784CE1 for ; Wed, 11 Aug 2021 09:38:38 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([IPv6:::1]) by localhost (mail.netbsd.org [IPv6:::1]) (amavisd-new, port 10025) with ESMTP id 3DBEHqOYiXru for ; Wed, 11 Aug 2021 09:38:38 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id C3C5184C13 for ; Wed, 11 Aug 2021 09:38:37 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id B0C93FA97; Wed, 11 Aug 2021 09:38:37 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1628674717270320" MIME-Version: 1.0 Date: Wed, 11 Aug 2021 09:38:37 +0000 From: "Wen Heping" Subject: CVS commit: pkgsrc/math/R To: pkgsrc-changes@NetBSD.org Reply-To: wen@netbsd.org X-Mailer: log_accum Message-Id: <20210811093837.B0C93FA97@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1628674717270320 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: wen Date: Wed Aug 11 09:38:37 UTC 2021 Modified Files: pkgsrc/math/R: Makefile distinfo Removed Files: pkgsrc/math/R/patches: patch-src_main_printutils.c Log Message: Update to 4.1.1 Upstream changes: CHANGES IN R 4.1.1: NEW FEATURES: * require(pkg, quietly = TRUE) is quieter and in particular does not warn if the package is not found. DEPRECATED AND DEFUNCT: * Use of ftp:// URIs should be regarded as deprecated, with on-going support confined to method = "libcurl" and not routinely tested. (Nowadays no major browser supports them.) * The non-default method = "internal" is deprecated for http:// and ftp:// URIs for both download.file and url. * On Windows, method = "wininet" is deprecated for http://, https:// and ftp:// URIs for both download.file and url. (A warning is only given for ftp://.) For ftp:// URIs the default method is now "libcurl" if available (which it is on CRAN builds). method = "wininet" remains the default for http:// and https:// URIs but if libcurl is available, using method = "libcurl" is preferred. INSTALLATION: * make check now works also without a LaTeX installation. (Thanks to Sebastian Meyer's PR#18103.) BUG FIXES: * make check-devel works again in an R build configured with --without-recommended-packages. * qnbinom(p, size, mu) for large size/mu is correct now in a range of cases (PR#18095); similarly for the (size, prob) parametrization of the negative binomial. Also qpois() and qbinom() are better and or faster for extreme cases. The underlying C code has been modularized and is common to all four cases of discrete distributions. * gap.axis is now part of the axis() arguments which are passed from bxp(), and hence boxplot(). (Thanks to Martin Smith's report and suggestions in PR#18109.) * .First and .Last can again be set from the site profile. * seq.int(from, to, *) and seq.default(..) now work better in large range cases where from-to is infinite where the two boundaries are finite. * all.equal(x,y) now returns TRUE correctly also when several entries of abs(x) and abs(y) are close to .Machine$double.xmax, the largest finite numeric. * model.frame() now clears the object bit when removing the class attribute of a value via na.action (PR#18100). * charClass() now works with multi-character strings on Windows (PR#18104, fixed by Bill Dunlap). * encodeString() on Solaris now works again in Latin-1 encoding on characters represented differently in UTF-8. Support for surrogate pairs on Solaris has been improved. * file.show() on Windows now works with non-ASCII path names representable in the current native encoding (PR#18132). * Embedded R on Windows can now find R home directory via the registry even when installed only for the current user (PR#18135). * pretty(x) with finite x now returns finite values also in the case where the extreme x values are close in size to the maximal representable number .Machine$double.xmax. Also, it's been tweaked for very small ranges and when a boundary is close (or equal) to zero; e.g., pretty(c(0,1e-317)) no longer has negative numbers, currently still warning about a very small range, and pretty(2^-(1024 - 2^-1/(c(24,10)))) is more accurate. * The error message for not finding vignette files when weaving has correct file sizes now. (Thanks to Sebastian Meyer's PR#18154.) * dnbinom(20, , 1) now correctly gives 0, and similar cases are more accurate with underflow precaution. (Reported by Francisco Vera Alcivar in PR#18072.) To generate a diff of this commit: cvs rdiff -u -r1.224 -r1.225 pkgsrc/math/R/Makefile cvs rdiff -u -r1.88 -r1.89 pkgsrc/math/R/distinfo cvs rdiff -u -r1.1 -r0 pkgsrc/math/R/patches/patch-src_main_printutils.c Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1628674717270320 Content-Disposition: inline Content-Length: 1703 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/R/Makefile diff -u pkgsrc/math/R/Makefile:1.224 pkgsrc/math/R/Makefile:1.225 --- pkgsrc/math/R/Makefile:1.224 Tue Jun 15 06:51:42 2021 +++ pkgsrc/math/R/Makefile Wed Aug 11 09:38:37 2021 @@ -1,7 +1,6 @@ -# $NetBSD: Makefile,v 1.224 2021/06/15 06:51:42 thor Exp $ +# $NetBSD: Makefile,v 1.225 2021/08/11 09:38:37 wen Exp $ -DISTNAME= R-4.1.0 -PKGREVISION= 1 +DISTNAME= R-4.1.1 CATEGORIES= math MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-4/} Index: pkgsrc/math/R/distinfo diff -u pkgsrc/math/R/distinfo:1.88 pkgsrc/math/R/distinfo:1.89 --- pkgsrc/math/R/distinfo:1.88 Sun Jun 13 13:10:46 2021 +++ pkgsrc/math/R/distinfo Wed Aug 11 09:38:37 2021 @@ -1,9 +1,9 @@ -$NetBSD: distinfo,v 1.88 2021/06/13 13:10:46 wen Exp $ +$NetBSD: distinfo,v 1.89 2021/08/11 09:38:37 wen Exp $ -SHA1 (R-4.1.0.tar.gz) = c84697f2a0a5b89ff75dfe10fcb87656cc68144c -RMD160 (R-4.1.0.tar.gz) = fe7de80b43c678ed20fada00b4cad89d8df56d10 -SHA512 (R-4.1.0.tar.gz) = 41519bf06a1ebc2bb582e9a7c35d0e82e213312dec8147861a7f9b28ee750cd40dfbf02737602d05698641fcea6182b0da8131e83edacc358e98eca0a393b729 -Size (R-4.1.0.tar.gz) = 33714683 bytes +SHA1 (R-4.1.1.tar.gz) = a7c40a9bd7cb050a4fad6b7dba53e991e37e0fd1 +RMD160 (R-4.1.1.tar.gz) = d0eb885bb3f3da858e023b2983098e927af70aaa +SHA512 (R-4.1.1.tar.gz) = 8eef82c0321f53a6a737bb641c4401626682fd01fa21e497ed2b8d6291d94ada47cee46b258bb3052f1097fc087c72982b2625c80420c8fb230ba8fcd962f254 +Size (R-4.1.1.tar.gz) = 33719965 bytes SHA1 (patch-configure.ac) = 2732e3e0a39ee64ae4cba5c476f4754ecbd14942 SHA1 (patch-m4_R.m4) = 704d5514e10adf0b5217bb71b06f44a612eca6e0 SHA1 (patch-src_library_stats_src_Makefile.in) = 4eb93292858392792c37a706399e2cef91821bbe --_----------=_1628674717270320--