Received: by mail.netbsd.org (Postfix, from userid 605) id 957E084E6B; Mon, 20 Sep 2021 00:10:55 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id CF40584E69 for ; Mon, 20 Sep 2021 00:10:54 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id vitUriGQ02Iq for ; Mon, 20 Sep 2021 00:10:54 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id E3E6584D0C for ; Mon, 20 Sep 2021 00:10:53 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id DB8F3FA97; Mon, 20 Sep 2021 00:10:53 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_163209665385370" MIME-Version: 1.0 Date: Mon, 20 Sep 2021 00:10:53 +0000 From: "Makoto Fujiwara" Subject: CVS commit: pkgsrc/math/R-robustbase To: pkgsrc-changes@NetBSD.org Reply-To: mef@netbsd.org X-Mailer: log_accum Message-Id: <20210920001053.DB8F3FA97@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_163209665385370 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: mef Date: Mon Sep 20 00:10:53 UTC 2021 Modified Files: pkgsrc/math/R-robustbase: Makefile distinfo Log Message: (math/R-robustbase) Updated 0.93.5 to 0.93.8 (R CMD Rdconv -t txt math/R-robustbase/work/robustbase/inst/NEWS.Rd) CHANGES in robustbase VERSION 0.93-8 (2021-06-01, svn r879): NEW FEATURES: * 'scaleTau2()' gets new optional 'iter = 1' and 'tol.iter' arguments; mostly experimentally to see if or when iteration makes sense. * 'Qn(x, *)' gets new optional 'k = .' to indicate the "quantile" i.e., order statistic to be computed (with default as previously hard-coded). Experimentally to try for cases where more than n/2 observations coincide (with the median), i.e., 'x[i] == x0 == median(x[])', and hence 'Qn(x)' and 'mad(x)' are zero. * 'adjOutlyingness()' gets new option 'IQRtype = 7'. Tweaks: * For tests: *again* differences found in the non-sensical 'adjOutlyingness()' example (with large p/n, hence many "random" values in the order of 1e15). Disable the test for now (and record the result in *.Rout). BUG FIXES: * The 'test()' utility in 'tests/lmrob-ex12.R' no longer calls 'matrix(x, n,4)' where the length of x does not match '4n'. Similar change in 'tests/mc-strict.R' CHANGES in robustbase VERSION 0.93-7 (2021-01-03, svn r865): NEW FEATURES: * Use '\CRANpkg{.}' in most places, providing web links to the respective CRAN package page. * 'adjOutlyingness()' now gains optional parameters to be passed to 'mc()'. BUG FIXES: * update the internal man page, so new 'checkRdContents()' is happy. * fix several '\url{.}''s that now are diagnosed as 'moved'. * 'adjOutlyingness()' finally works with 'p.samp > p'. * 'scaleTau2()' now works with 'Inf' and very large values, and obeys new 'na.rm = FALSE' argument. * add 'check.environment=FALSE' to some of the 'all.equal()' calls (for 'R-devel', i.e., future R 4.1.x). * 'wgt.himedian(numeric())' now returns 'NA' instead of occasionally seg.faulting or inf.looping. Ditto for a case when called from 'Qn()'. CHANGES in robustbase VERSION 0.93-6 (2020-03-20, svn r854): NEW FEATURES: * 'splitFrame()' now treats 'character' columns also as categorical (the same as 'factor's). Tweaks: * Small updates, also in checks for newer compiler settings, e.g., 'FCLEN' macro; also F77_*() etc, in order to fix 'LTO' issues. * More careful or _less_ calling 'intpr()': correct "Rank" of array (for gfortran/gcc 10, when '-fallow-argument-mismatch' is not set). To generate a diff of this commit: cvs rdiff -u -r1.1 -r1.2 pkgsrc/math/R-robustbase/Makefile \ pkgsrc/math/R-robustbase/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_163209665385370 Content-Disposition: inline Content-Length: 2327 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/R-robustbase/Makefile diff -u pkgsrc/math/R-robustbase/Makefile:1.1 pkgsrc/math/R-robustbase/Makefile:1.2 --- pkgsrc/math/R-robustbase/Makefile:1.1 Fri Aug 9 15:48:20 2019 +++ pkgsrc/math/R-robustbase/Makefile Mon Sep 20 00:10:53 2021 @@ -1,8 +1,7 @@ -# $NetBSD: Makefile,v 1.1 2019/08/09 15:48:20 brook Exp $ +# $NetBSD: Makefile,v 1.2 2021/09/20 00:10:53 mef Exp $ R_PKGNAME= robustbase -R_PKGVER= 0.93-5 -CATEGORIES= math +R_PKGVER= 0.93-8 MAINTAINER= pkgsrc-users@NetBSD.org COMMENT= Basic robust statistics @@ -10,8 +9,17 @@ LICENSE= gnu-gpl-v2 OR gnu-gpl-v3 DEPENDS+= R-DEoptimR>=1.0.8:../../math/R-DEoptimR +# Packages suggested but not available: +# 'robust', 'fit.models', 'MPV', 'GGally', +# 'RColorBrewer', 'reshape2', 'sfsmisc', 'catdata', 'doParallel', +# 'foreach', 'skewt' +TEST_DEPENDS+= R-ggplot2-[0-9]*:../../graphics/R-ggplot2 +TEST_DEPENDS+= R-xtable-[0-9]*:../../math/R-xtable + +# Packages which this enhances but not available for checking: +# 'robustX', 'rrcov', 'matrixStats', 'quantreg', 'Hmisc' + USE_LANGUAGES= c fortran .include "../../math/R/Makefile.extension" .include "../../mk/bsd.pkg.mk" - Index: pkgsrc/math/R-robustbase/distinfo diff -u pkgsrc/math/R-robustbase/distinfo:1.1 pkgsrc/math/R-robustbase/distinfo:1.2 --- pkgsrc/math/R-robustbase/distinfo:1.1 Fri Aug 9 15:48:20 2019 +++ pkgsrc/math/R-robustbase/distinfo Mon Sep 20 00:10:53 2021 @@ -1,6 +1,6 @@ -$NetBSD: distinfo,v 1.1 2019/08/09 15:48:20 brook Exp $ +$NetBSD: distinfo,v 1.2 2021/09/20 00:10:53 mef Exp $ -SHA1 (R/robustbase_0.93-5.tar.gz) = 62d3ce4e616c3a3692312ba2f2d4ecfd8b519baf -RMD160 (R/robustbase_0.93-5.tar.gz) = ab243bdd7d93ea803d6e275309009008241a7457 -SHA512 (R/robustbase_0.93-5.tar.gz) = 81ae41c0f0009c77ab26d2f0b82414ae2f730acece2eb79da18ac676c1b506d078586fc0502579f092698fba858cf44578293583d7b074e07131952b333ea7aa -Size (R/robustbase_0.93-5.tar.gz) = 2957246 bytes +SHA1 (R/robustbase_0.93-8.tar.gz) = b3bc3960fd5d3d80042660fb9cdd9031f4234328 +RMD160 (R/robustbase_0.93-8.tar.gz) = df7a77c04bd21636b5015eff7f4a1cb649529f7e +SHA512 (R/robustbase_0.93-8.tar.gz) = 1e6d2f7dd90bd9b095953f80bd59a008b410f13c05641e67ea43ee85ebfd5dc4d6c7908e0a3426cd6cee7e8f13ab1ed71443abe153988dac08de927369818181 +Size (R/robustbase_0.93-8.tar.gz) = 2334489 bytes --_----------=_163209665385370--