Received: by mail.netbsd.org (Postfix, from userid 605) id 68F1784EA5; Sat, 25 Feb 2023 13:50:40 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 969BB84CDC for ; Sat, 25 Feb 2023 13:50:39 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id 7ElYZuo-do0V for ; Sat, 25 Feb 2023 13:50:39 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id ED14584CD8 for ; Sat, 25 Feb 2023 13:50:38 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id E67C0FA90; Sat, 25 Feb 2023 13:50:38 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1677333038231450" MIME-Version: 1.0 Date: Sat, 25 Feb 2023 13:50:38 +0000 From: "Jason Bacon" Subject: CVS commit: pkgsrc/biology/htslib To: pkgsrc-changes@NetBSD.org Reply-To: bacon@netbsd.org X-Mailer: log_accum Message-Id: <20230225135038.E67C0FA90@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1677333038231450 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: bacon Date: Sat Feb 25 13:50:38 UTC 2023 Modified Files: pkgsrc/biology/htslib: Makefile PLIST buildlink3.mk distinfo Log Message: biology/htslib: Update to 1.17 Numerous enhancements and fixes Changes: https://github.com/samtools/htslib/releases To generate a diff of this commit: cvs rdiff -u -r1.30 -r1.31 pkgsrc/biology/htslib/Makefile cvs rdiff -u -r1.5 -r1.6 pkgsrc/biology/htslib/PLIST cvs rdiff -u -r1.8 -r1.9 pkgsrc/biology/htslib/buildlink3.mk cvs rdiff -u -r1.10 -r1.11 pkgsrc/biology/htslib/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1677333038231450 Content-Disposition: inline Content-Length: 2705 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/biology/htslib/Makefile diff -u pkgsrc/biology/htslib/Makefile:1.30 pkgsrc/biology/htslib/Makefile:1.31 --- pkgsrc/biology/htslib/Makefile:1.30 Wed Dec 28 15:27:16 2022 +++ pkgsrc/biology/htslib/Makefile Sat Feb 25 13:50:38 2023 @@ -1,6 +1,6 @@ -# $NetBSD: Makefile,v 1.30 2022/12/28 15:27:16 bacon Exp $ +# $NetBSD: Makefile,v 1.31 2023/02/25 13:50:38 bacon Exp $ -DISTNAME= htslib-1.16 +DISTNAME= htslib-1.17 CATEGORIES= biology MASTER_SITES= ${MASTER_SITE_GITHUB:=samtools/} GITHUB_RELEASE= ${PKGVERSION_NOREV} Index: pkgsrc/biology/htslib/PLIST diff -u pkgsrc/biology/htslib/PLIST:1.5 pkgsrc/biology/htslib/PLIST:1.6 --- pkgsrc/biology/htslib/PLIST:1.5 Sat Feb 26 23:08:43 2022 +++ pkgsrc/biology/htslib/PLIST Sat Feb 25 13:50:38 2023 @@ -1,4 +1,4 @@ -@comment $NetBSD: PLIST,v 1.5 2022/02/26 23:08:43 bacon Exp $ +@comment $NetBSD: PLIST,v 1.6 2023/02/25 13:50:38 bacon Exp $ bin/bgzip bin/htsfile bin/tabix Index: pkgsrc/biology/htslib/buildlink3.mk diff -u pkgsrc/biology/htslib/buildlink3.mk:1.8 pkgsrc/biology/htslib/buildlink3.mk:1.9 --- pkgsrc/biology/htslib/buildlink3.mk:1.8 Tue Jun 28 11:31:00 2022 +++ pkgsrc/biology/htslib/buildlink3.mk Sat Feb 25 13:50:38 2023 @@ -1,12 +1,12 @@ -# $NetBSD: buildlink3.mk,v 1.8 2022/06/28 11:31:00 wiz Exp $ +# $NetBSD: buildlink3.mk,v 1.9 2023/02/25 13:50:38 bacon Exp $ BUILDLINK_TREE+= htslib .if !defined(HTSLIB_BUILDLINK3_MK) HTSLIB_BUILDLINK3_MK:= -BUILDLINK_API_DEPENDS.htslib+= htslib>=1.14 -BUILDLINK_ABI_DEPENDS.htslib+= htslib>=1.15nb1 +BUILDLINK_API_DEPENDS.htslib+= htslib>=1.17 +BUILDLINK_ABI_DEPENDS.htslib+= htslib>=1.17 BUILDLINK_PKGSRCDIR.htslib?= ../../biology/htslib .endif # HTSLIB_BUILDLINK3_MK Index: pkgsrc/biology/htslib/distinfo diff -u pkgsrc/biology/htslib/distinfo:1.10 pkgsrc/biology/htslib/distinfo:1.11 --- pkgsrc/biology/htslib/distinfo:1.10 Tue Dec 13 10:27:03 2022 +++ pkgsrc/biology/htslib/distinfo Sat Feb 25 13:50:38 2023 @@ -1,5 +1,5 @@ -$NetBSD: distinfo,v 1.10 2022/12/13 10:27:03 adam Exp $ +$NetBSD: distinfo,v 1.11 2023/02/25 13:50:38 bacon Exp $ -BLAKE2s (htslib-1.16.tar.bz2) = 5a4620982ac745706107fd0646de630b2410d133b4966fffa304ef62bb345beb -SHA512 (htslib-1.16.tar.bz2) = 9fa0b1f9bba50f889d4542825c9543fb3b34c13b4cc0e18940a66fafd130749574bfa2c2663d8b39f0b4ed2b298bf130367cda1b17b2929093d64b386730cbc5 -Size (htslib-1.16.tar.bz2) = 4466776 bytes +BLAKE2s (htslib-1.17.tar.bz2) = 01a90e639179c0f819a24f74cfe232963699c79b94c153e45f23a2bccac50373 +SHA512 (htslib-1.17.tar.bz2) = 624ab449d57713dab2d34399926c065f8cff8a45e6fbe68e0bb518c601421f587b613caeb095f8639b1d67cdb4a65d658c85f942173bcaa48da026fe15def5d3 +Size (htslib-1.17.tar.bz2) = 4619884 bytes --_----------=_1677333038231450--