Received: by mail.netbsd.org (Postfix, from userid 605) id EAFF084E90; Mon, 8 May 2023 20:39:19 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id 26B5784D5F for ; Mon, 8 May 2023 20:39:19 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([IPv6:::1]) by localhost (mail.netbsd.org [IPv6:::1]) (amavisd-new, port 10025) with ESMTP id 7EAuDt_s3opn for ; Mon, 8 May 2023 20:39:18 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id 7B4F384CE3 for ; Mon, 8 May 2023 20:39:18 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 6E339FA87; Mon, 8 May 2023 20:39:18 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1683578358275300" MIME-Version: 1.0 Date: Mon, 8 May 2023 20:39:18 +0000 From: "Tobias Nygren" Subject: CVS commit: pkgsrc/math/py-scipy To: pkgsrc-changes@NetBSD.org Reply-To: tnn@netbsd.org X-Mailer: log_accum Message-Id: <20230508203918.6E339FA87@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1683578358275300 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: tnn Date: Mon May 8 20:39:18 UTC 2023 Modified Files: pkgsrc/math/py-scipy: distinfo Added Files: pkgsrc/math/py-scipy/patches: patch-scipy_spatial___ckdtree.pyx patch-scipy_special_Faddeeva.hh patch-scipy_special_wright.hh Log Message: py-scipy: fix missing isnan/isinf prototypes To generate a diff of this commit: cvs rdiff -u -r1.42 -r1.43 pkgsrc/math/py-scipy/distinfo cvs rdiff -u -r0 -r1.1 \ pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx \ pkgsrc/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh \ pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1683578358275300 Content-Disposition: inline Content-Length: 3311 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/py-scipy/distinfo diff -u pkgsrc/math/py-scipy/distinfo:1.42 pkgsrc/math/py-scipy/distinfo:1.43 --- pkgsrc/math/py-scipy/distinfo:1.42 Fri May 5 14:59:25 2023 +++ pkgsrc/math/py-scipy/distinfo Mon May 8 20:39:18 2023 @@ -1,8 +1,11 @@ -$NetBSD: distinfo,v 1.42 2023/05/05 14:59:25 adam Exp $ +$NetBSD: distinfo,v 1.43 2023/05/08 20:39:18 tnn Exp $ BLAKE2s (scipy-1.10.1.tar.gz) = 0ba22381e66ccc4017de0042a14410af34e44455f4c4a12b80ed3f670c0d2d72 SHA512 (scipy-1.10.1.tar.gz) = 767e1dee6285d98e4d58d8d8d1e3654b00e3216e9ad55455fc9473f1d044bef80ecce749bcd24d8f331367b882c9c3e6b652a6e901bb4296ddc7cc44699215b6 Size (scipy-1.10.1.tar.gz) = 42407997 bytes +SHA1 (patch-scipy_spatial___ckdtree.pyx) = 0739d06bc1d1cb75761dd0f43c47a76f2a90327b SHA1 (patch-scipy_spatial_ckdtree_src_ckdtree__decl.h) = c5684427731eef00c012b1ebc7fba00da560f493 +SHA1 (patch-scipy_special_Faddeeva.hh) = 9f6c0bb808fc9be0a1c1b7e65395d29f13821233 SHA1 (patch-scipy_special_sf__error.c) = 416489193a6ff90caaa95f489a452f23f0a27bbe +SHA1 (patch-scipy_special_wright.hh) = 56d65f9ed4bec96f0b927bbe42edd30fc6546454 SHA1 (patch-scipy_stats__unuran_setup.py) = ea6651d6e07781a5a600f33e5f0d251213e6c614 Added files: Index: pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx diff -u /dev/null pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx:1.1 --- /dev/null Mon May 8 20:39:18 2023 +++ pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx Mon May 8 20:39:18 2023 @@ -0,0 +1,16 @@ +$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.1 2023/05/08 20:39:18 tnn Exp $ + +Fix missing isnan/isinf. + +--- scipy/spatial/_ckdtree.pyx.orig 1970-01-01 00:00:00.000000000 +0000 ++++ scipy/spatial/_ckdtree.pyx +@@ -15,7 +15,8 @@ from numpy.math cimport INFINITY + from cpython.mem cimport PyMem_Malloc, PyMem_Free + from libcpp.vector cimport vector + from libcpp cimport bool +-from libc.math cimport isinf ++cdef extern from "" namespace "std": ++ bool isinf(double) + + cimport cython + import os Index: pkgsrc/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh diff -u /dev/null pkgsrc/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh:1.1 --- /dev/null Mon May 8 20:39:18 2023 +++ pkgsrc/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh Mon May 8 20:39:18 2023 @@ -0,0 +1,15 @@ +$NetBSD: patch-scipy_special_Faddeeva.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $ + +Fix missing isnan/isinf. + +--- scipy/special/Faddeeva.hh.orig 1970-01-01 00:00:00.000000000 +0000 ++++ scipy/special/Faddeeva.hh +@@ -28,6 +28,8 @@ + #define FADDEEVA_HH 1 + + #include ++using std::isinf; ++using std::isnan; + + namespace Faddeeva { + Index: pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh diff -u /dev/null pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh:1.1 --- /dev/null Mon May 8 20:39:18 2023 +++ pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh Mon May 8 20:39:18 2023 @@ -0,0 +1,15 @@ +$NetBSD: patch-scipy_special_wright.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $ + +Fix missing isnan/isinf. + +--- scipy/special/wright.hh.orig 1970-01-01 00:00:00.000000000 +0000 ++++ scipy/special/wright.hh +@@ -2,6 +2,8 @@ + #define WRIGHT_HH + + #include ++using std::isinf; ++using std::isnan; + + namespace wright { + --_----------=_1683578358275300--