Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id CC13984F42 for ; Sat, 8 Jul 2023 04:31:43 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id XA_bOEkwDIdm for ; Sat, 8 Jul 2023 04:31:43 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id 207EE84F41 for ; Sat, 8 Jul 2023 04:31:43 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id 1DC20FBDB; Sat, 8 Jul 2023 04:31:43 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1688790703163660" MIME-Version: 1.0 Date: Sat, 8 Jul 2023 04:31:43 +0000 From: "Makoto Fujiwara" Subject: CVS commit: pkgsrc/math/R-insight To: pkgsrc-changes@NetBSD.org Approved: commit_and_comment Reply-To: mef@netbsd.org X-Mailer: log_accum Message-Id: <20230708043143.1DC20FBDB@cvs.NetBSD.org> This is a multi-part message in MIME format. --_----------=_1688790703163660 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: mef Date: Sat Jul 8 04:31:43 UTC 2023 Modified Files: pkgsrc/math/R-insight: Makefile distinfo Log Message: (math/R-insight) Updated 0.19.2 to 0.19.3 # insight 0.19.3 ## Breaking changes * `standardize_column_order()` has changed the position when re-ordering Bayes factors, ROPEs and ESS / Rhat (mainly relevant for Bayesian models). ## Changes to functions * `standardize_names()` and `standardize_column_order()` now also recognize the `"response.level"` column name. * `get_data()` for _lavaan_ models is now more stable at retrieving model data when this is not available in the environment. * `find_terms()` gets an `as_term_labels` argument, to extract model terms from the formula's `"term.labels"` attribute. This is closer to the behaviour of `stats::terms()`, but may be insufficient, e.g. for mixed models. ## Bug fixes * `get_random()` now returns the same observations as `get_data()` and correctly removes missing values from the data before returning it. * `find_parameters()` for marginal effects ignores the `"s.value"` column (which was added in a recent update). * Fixed issue in `get_response()` for _brms_ models with `trunc()` function in the response variable. To generate a diff of this commit: cvs rdiff -u -r1.3 -r1.4 pkgsrc/math/R-insight/Makefile cvs rdiff -u -r1.5 -r1.6 pkgsrc/math/R-insight/distinfo Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1688790703163660 Content-Disposition: inline Content-Length: 3159 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/R-insight/Makefile diff -u pkgsrc/math/R-insight/Makefile:1.3 pkgsrc/math/R-insight/Makefile:1.4 --- pkgsrc/math/R-insight/Makefile:1.3 Thu Jun 15 12:53:56 2023 +++ pkgsrc/math/R-insight/Makefile Sat Jul 8 04:31:42 2023 @@ -1,7 +1,7 @@ -# $NetBSD: Makefile,v 1.3 2023/06/15 12:53:56 mef Exp $ +# $NetBSD: Makefile,v 1.4 2023/07/08 04:31:42 mef Exp $ R_PKGNAME= insight -R_PKGVER= 0.19.2 +R_PKGVER= 0.19.3 MAINTAINER= pkgsrc-users@NetBSD.org COMMENT= Easy Access to Model Information for Various Model Objects @@ -9,17 +9,17 @@ LICENSE= gnu-gpl-v3 # Packages suggested but not available: # 'AER', 'afex', 'aod', 'BayesFactor', 'bayestestR', 'betareg', 'bife', -# 'biglm', 'blavaan', 'blme', 'brms', 'censReg', 'cgam', -# 'clubSandwich', 'coxme', 'cplm', 'crch', 'datawizard', 'effectsize', -# 'emmeans', 'epiR', 'estimatr', 'feisr', 'fixest', 'fungible', 'gam', -# 'gamlss', 'gamm4', 'gbm', 'gee', 'geepack', 'GLMMadaptive', -# 'glmmTMB', 'gmnl', 'gt', 'ivreg', 'JM', 'lavaan', 'lfe', 'lmerTest', -# 'logistf', 'marginaleffects', 'mclust', 'MCMCglmm', 'merTools', -# 'metaBMA', 'mice', 'mlogit', 'mhurdle', 'multgee', 'nonnest2', -# 'ordinal', 'panelr', 'parameters', 'parsnip', 'pbkrtest', +# 'biglm', 'blavaan', 'blme', 'brms', 'broom', 'car', 'carData', +# 'censReg', 'cgam', 'clubSandwich', 'coxme', 'cplm', 'crch', +# 'datawizard', 'effectsize', 'emmeans', 'epiR', 'estimatr', 'feisr', +# 'fixest', 'fungible', 'gam', 'gamlss', 'gamlss.data', 'gamm4', 'gbm', +# 'gee', 'geepack', 'geoR', 'GLMMadaptive', 'glmmTMB', 'gmnl', 'gt', +# 'interp', 'ivreg', 'JM', 'lavaan', 'lavaSearch2', 'lfe', 'lmerTest', +# 'MCMCglmm', 'merTools', 'metaBMA', 'metadat', 'metafor', 'metaplus', +# 'mice', 'mlogit', 'mhurdle', 'mmrm', 'multgee', 'nestedLogit', +# 'nonnest2', 'ordinal', 'parameters', 'parsnip', 'pbkrtest', # 'performance', 'plm', 'poorman', 'pscl', 'rms', 'robustlmm', -# 'rstanarm', 'rstantools', 'speedglm', 'tripack', 'truncreg', -# 'tweedie' +# 'rstanarm', 'rstantools', 'speedglm', 'truncreg', 'tweedie', 'TMB' TEST_DEPENDS+= R-VGAM-[0-9]*:../../math/R-VGAM Index: pkgsrc/math/R-insight/distinfo diff -u pkgsrc/math/R-insight/distinfo:1.5 pkgsrc/math/R-insight/distinfo:1.6 --- pkgsrc/math/R-insight/distinfo:1.5 Thu Jun 15 12:53:56 2023 +++ pkgsrc/math/R-insight/distinfo Sat Jul 8 04:31:42 2023 @@ -1,5 +1,5 @@ -$NetBSD: distinfo,v 1.5 2023/06/15 12:53:56 mef Exp $ +$NetBSD: distinfo,v 1.6 2023/07/08 04:31:42 mef Exp $ -BLAKE2s (R/insight_0.19.2.tar.gz) = 27546bc02180e245ac4839c3c831f807e1efe13e610bb99f4c6447b3489b6e8c -SHA512 (R/insight_0.19.2.tar.gz) = 05ca3c0552b6d33fb654c29c77379f546fd56836f853c919903298f840b07a2a02ab60c6f37d2a93a4e91fabe95b3c013b90e33910d3295069abf66857595839 -Size (R/insight_0.19.2.tar.gz) = 930723 bytes +BLAKE2s (R/insight_0.19.3.tar.gz) = abdc782bfc14eca2cf8a1937e038fd37fd08001c3e1acb7e990028a152f18c04 +SHA512 (R/insight_0.19.3.tar.gz) = 34adfaa0756e164b3635da57df57de45bfaf1df277b243b4fa3df4c382a9a078f09b7e8ddb9537bd58dcecfd32b02f197296e96f2f5db2f8e0eb04bc41df445f +Size (R/insight_0.19.3.tar.gz) = 932770 bytes --_----------=_1688790703163660--