Received: by mail.netbsd.org (Postfix, from userid 605) id 7505084F7E; Tue, 23 Jan 2024 23:50:05 +0000 (UTC) Received: from localhost (localhost [127.0.0.1]) by mail.netbsd.org (Postfix) with ESMTP id A1E7D84F08 for ; Tue, 23 Jan 2024 23:50:04 +0000 (UTC) X-Virus-Scanned: amavisd-new at netbsd.org Received: from mail.netbsd.org ([127.0.0.1]) by localhost (mail.netbsd.org [127.0.0.1]) (amavisd-new, port 10025) with ESMTP id p2-73dl_YIdV for ; Tue, 23 Jan 2024 23:50:04 +0000 (UTC) Received: from cvs.NetBSD.org (ivanova.NetBSD.org [IPv6:2001:470:a085:999:28c:faff:fe03:5984]) by mail.netbsd.org (Postfix) with ESMTP id EA2F584E83 for ; Tue, 23 Jan 2024 23:50:03 +0000 (UTC) Received: by cvs.NetBSD.org (Postfix, from userid 500) id D5032FA42; Tue, 23 Jan 2024 23:50:03 +0000 (UTC) Content-Transfer-Encoding: 7bit Content-Type: multipart/mixed; boundary="_----------=_1706053803232540" MIME-Version: 1.0 Date: Tue, 23 Jan 2024 23:50:03 +0000 From: "Makoto Fujiwara" Subject: CVS commit: pkgsrc/math/R-RNetCDF To: pkgsrc-changes@NetBSD.org Reply-To: mef@netbsd.org X-Mailer: log_accum Message-Id: <20240123235003.D5032FA42@cvs.NetBSD.org> Sender: pkgsrc-changes-owner@NetBSD.org List-Id: Precedence: bulk List-Unsubscribe: This is a multi-part message in MIME format. --_----------=_1706053803232540 Content-Disposition: inline Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset="US-ASCII" Module Name: pkgsrc Committed By: mef Date: Tue Jan 23 23:50:03 UTC 2024 Modified Files: pkgsrc/math/R-RNetCDF: Makefile distinfo Removed Files: pkgsrc/math/R-RNetCDF/patches: patch-configure Log Message: (math/R-RNetCDF) Updated 2.6.2 5o 2.9.1, make test does not pass Version 2.9-1, 2023-12-30 * Fix support for parallel I/O with MPICH (and related MPI variants) * Fix error handlers to remove potentially insecure format strings Version 2.8-1, 2023-10-21 * Fix builds on platforms where share directory is not under $R_HOME * Fix UBSAN warning when converting empty NC_CHAR to R string * Fix type conversions with oneAPI compiler Version 2.7-1, 2023-10-02 * Fix crash when calling nc_free_vlen on vlen with zero-length * Support packing and unpacking of vlen * Support fill value conversions in non-numeric data types: NC_CHAR, NC_STRING, enum, compound, and vlen * Improve support for NetCDF parallel I/O in configure script: - Specify MPI compiler via argument --with-mpicc - Enable MPI tests in R CMD check via argument --with-mpiexec - Give warnings if MPI and/or NetCDF parallel I/O not detected * Add configure option --with-nc-config-static to allow selection of static libraries from nc-config * Build Windows package with NetCDF library from RTools4x - Adapt to newer RTools by using configure script on Windows * Add examples using hierarchical groups to help for grp.inq.nc To generate a diff of this commit: cvs rdiff -u -r1.24 -r1.25 pkgsrc/math/R-RNetCDF/Makefile cvs rdiff -u -r1.7 -r1.8 pkgsrc/math/R-RNetCDF/distinfo cvs rdiff -u -r1.3 -r0 pkgsrc/math/R-RNetCDF/patches/patch-configure Please note that diffs are not public domain; they are subject to the copyright notices on the relevant files. --_----------=_1706053803232540 Content-Disposition: inline Content-Length: 2136 Content-Transfer-Encoding: binary Content-Type: text/x-diff; charset=us-ascii Modified files: Index: pkgsrc/math/R-RNetCDF/Makefile diff -u pkgsrc/math/R-RNetCDF/Makefile:1.24 pkgsrc/math/R-RNetCDF/Makefile:1.25 --- pkgsrc/math/R-RNetCDF/Makefile:1.24 Wed Nov 8 13:20:00 2023 +++ pkgsrc/math/R-RNetCDF/Makefile Tue Jan 23 23:50:03 2024 @@ -1,15 +1,20 @@ -# $NetBSD: Makefile,v 1.24 2023/11/08 13:20:00 wiz Exp $ +# $NetBSD: Makefile,v 1.25 2024/01/23 23:50:03 mef Exp $ R_PKGNAME= RNetCDF -R_PKGVER= 2.6-2 +R_PKGVER= 2.9-1 MAINTAINER= pkgsrc-users@NetBSD.org COMMENT= Interface to NetCDF datasets -PKGREVISION= 2 LICENSE= gnu-gpl-v2 OR gnu-gpl-v3 # OR file LICENSE TEST_DEPENDS+= R-bit64-[0-9]*:../../devel/R-bit64 +TEST_DEPENDS+= tex-ec-[0-9]*:../../fonts/tex-ec +TEST_DEPENDS+= tex-inconsolata-[0-9]*:../../fonts/tex-inconsolata +TEST_DEPENDS+= tex-latex-bin-[0-9]*:../../print/tex-latex-bin +TEST_DEPENDS+= tex-xkeyval-[0-9]*:../../print/tex-xkeyval +TEST_DEPENDS+= tex-url-[0-9]*:../../print/tex-url + .include "../../math/R/Makefile.extension" .include "../../devel/netcdf/buildlink3.mk" .include "../../math/udunits/buildlink3.mk" Index: pkgsrc/math/R-RNetCDF/distinfo diff -u pkgsrc/math/R-RNetCDF/distinfo:1.7 pkgsrc/math/R-RNetCDF/distinfo:1.8 --- pkgsrc/math/R-RNetCDF/distinfo:1.7 Sat Jun 17 10:52:59 2023 +++ pkgsrc/math/R-RNetCDF/distinfo Tue Jan 23 23:50:03 2024 @@ -1,6 +1,5 @@ -$NetBSD: distinfo,v 1.7 2023/06/17 10:52:59 mef Exp $ +$NetBSD: distinfo,v 1.8 2024/01/23 23:50:03 mef Exp $ -BLAKE2s (R/RNetCDF_2.6-2.tar.gz) = 37fd0282885e3884caaa11d42a0860bcd2d1aaa10ddbc20b7be2a9bd05bf8243 -SHA512 (R/RNetCDF_2.6-2.tar.gz) = ce79c1ff9948ffca3e8c3b61801a6705377c000b3a0017ae83e29bb87050cc9c73546d06eb310f1d98cf9f32b10509fbfa3d1af3b8ebf2da1820720b32d5109e -Size (R/RNetCDF_2.6-2.tar.gz) = 144105 bytes -SHA1 (patch-configure) = b8309c6e26be3039e8d86482979f031887abd123 +BLAKE2s (R/RNetCDF_2.9-1.tar.gz) = e213b0d0911f85acc398a1e1f23c43257d394e08adafda3fbd57643b22b2b2e1 +SHA512 (R/RNetCDF_2.9-1.tar.gz) = b651c5912fbddfe19feff76be1969ebd721f6e768158c1baf13d62e5036963dfb28682db631d8f77314073256b6dd64a9b84f9a3f7e648d8b182a64cd0276286 +Size (R/RNetCDF_2.9-1.tar.gz) = 160520 bytes --_----------=_1706053803232540--