Sun Sep 16 17:20:17 2012 UTC ()
CONFLICTS with generate-[0-9]*; ++pkgrevision


(cheusov)
diff -r1.11 -r1.12 pkgsrc/biology/glimmer/Makefile
cvs diff -r1.11 -r1.12 pkgsrc/biology/glimmer/Makefile (switch to unified diff)

--- pkgsrc/biology/glimmer/Makefile 2012/09/11 20:32:12 1.11
+++ pkgsrc/biology/glimmer/Makefile 2012/09/16 17:20:17 1.12
@@ -1,33 +1,36 @@ @@ -1,33 +1,36 @@
1# $NetBSD: Makefile,v 1.11 2012/09/11 20:32:12 asau Exp $ 1# $NetBSD: Makefile,v 1.12 2012/09/16 17:20:17 cheusov Exp $
2# 2#
3 3
4DISTNAME= glimmer213 4DISTNAME= glimmer213
 5PKGREVISION= 1
5PKGNAME= glimmer-2.13 6PKGNAME= glimmer-2.13
6CATEGORIES= biology 7CATEGORIES= biology
7MASTER_SITES= ftp://ftp.tigr.org/pub/software/Glimmer/ 8MASTER_SITES= ftp://ftp.tigr.org/pub/software/Glimmer/
8 9
9MAINTAINER= hdp@cs.nmsu.edu 10MAINTAINER= hdp@cs.nmsu.edu
10HOMEPAGE= ftp://ftp.tigr.org/pub/software/Glimmer/ 11HOMEPAGE= ftp://ftp.tigr.org/pub/software/Glimmer/
11COMMENT= System for finding genes in microbial DNA 12COMMENT= System for finding genes in microbial DNA
12 13
 14CONFLICTS+= generate-[0-9]*
 15
13USE_LANGUAGES= c c++ 16USE_LANGUAGES= c c++
14 17
15WRKSRC= ${WRKDIR}/glimmer2.13 18WRKSRC= ${WRKDIR}/glimmer2.13
16INSTALLATION_DIRS= bin 19INSTALLATION_DIRS= bin
17 20
18do-install: 21do-install:
19.for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \ 22.for PROGRAM in adjust anomaly build-icm check codon-usage compare-lists \
20 generate get-len get-putative glimmer2 long-orfs 23 generate get-len get-putative glimmer2 long-orfs
21 ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${DESTDIR}${PREFIX}/bin 24 ${INSTALL_PROGRAM} ${WRKSRC}/${PROGRAM} ${DESTDIR}${PREFIX}/bin
22.endfor 25.endfor
23 # ``extract'' is also in the csound package, so rename to avoid conflict 26 # ``extract'' is also in the csound package, so rename to avoid conflict
24 ${INSTALL_PROGRAM} ${WRKSRC}/extract ${DESTDIR}${PREFIX}/bin/glextract 27 ${INSTALL_PROGRAM} ${WRKSRC}/extract ${DESTDIR}${PREFIX}/bin/glextract
25 ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/glimmer 28 ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/doc/glimmer
26 ${CP} ${WRKSRC}/README ${WRKSRC}/run-glimmer2.readme 29 ${CP} ${WRKSRC}/README ${WRKSRC}/run-glimmer2.readme
27.for DOC in run-glimmer2.readme build-icm.readme extract.readme glimmer2.readme long-orfs.readme 30.for DOC in run-glimmer2.readme build-icm.readme extract.readme glimmer2.readme long-orfs.readme
28 ${INSTALL_DATA} ${WRKSRC}/${DOC} ${DESTDIR}${PREFIX}/share/doc/glimmer 31 ${INSTALL_DATA} ${WRKSRC}/${DOC} ${DESTDIR}${PREFIX}/share/doc/glimmer
29.endfor 32.endfor
30 ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/glimmer 33 ${INSTALL_DATA_DIR} ${DESTDIR}${PREFIX}/share/glimmer
31 ${INSTALL_SCRIPT} ${WRKSRC}/run-glimmer2 ${DESTDIR}${PREFIX}/share/glimmer 34 ${INSTALL_SCRIPT} ${WRKSRC}/run-glimmer2 ${DESTDIR}${PREFIX}/share/glimmer
32 35
33.include "../../mk/bsd.pkg.mk" 36.include "../../mk/bsd.pkg.mk"