Update to HDF5 1.8.9
This doesn't pass self-tests, but it isn't regression,
previous package didn't pass them as well.
(While here, make both packages share the same distinfo.)

Changes in HDF5 1.8.9

HDF5 1.8.9 is a minor release, but contains several important
new features and bug fixes. Changes in this release include the
following:

  * Committed datatypes can now be merged when copying objects,
    using the new flag H5O_COPY_MERGE_COMMITTED_DTYPE_FLAG.
    Several new API routines have been included in support of
    this feature.

  * A file in memory can now be accessed in the same way as a
    file on disk. New APIs were added to support this feature.

  * Many changes to the tools have been made, including the following:

      + The h5repack performance has been improved dramatically
        for large chunked datasets.

      + The -S (or --summary) option was added to h5stat to
        display a summary of the file space usage for a file.

      + A wildcard can now be used with h5dump to specify multiple files.

  * H5LTpath_valid was added to determine if a path is correct
    and a link resolves to a valid object.

  * The Fortran counterpart to H5Ocopy, h5ocopy_f, was added.

This release contains many other changes and bug fixes not listed here.
Please be sure to read the Release Notes for a comprehensive
list of new features and bug fixes.

Changes in HDF5 1.8.8

HDF5 1.8.8 is a minor release, but contains a few important new
features and bug fixes. Changes in this release include the
following:

  * Changes to the Fortran interface:
      + Fortran wrappers for the Dimension Scales APIs were added.
        For the new subroutine signatures, see:

           http://www.hdfgroup.org/HDF5/doc/HL/RM_H5DS.html

      + The Fortran interface now uses the Fortran 2003 standard,
        enabling a wider set of Fortran and HDF5 datatypes to be
        supported, including:

          o Any kind of INTEGER or REAL
          o Fortran derived types
          o Fortran and HDF5 enumeration
          o HDF5 variable-length datatypes
          o HDF5 compound datatypes of any complexity

        It also contains new subroutines corresponding to those
        C APIs which have callback functions as parameters.
	For a general overview and information on how to enable
        these new Fortran features, please see the following paper:

           http://www.hdfgroup.org/HDF5/doc/fortran/NewFeatures_F2003.pdf

        HDF5 examples that use Fortran 2003 (with the suffix "F03") can be found here:

           http://www.hdfgroup.org/ftp/HDF5/examples/examples-by-api/api18-fortran.html

        The --enable-fortran2003 configure flag was added to
        enable Fortran 2003 support in the HDF5 Fortran library.
        This flag should be used along with the --enable-fortran
        flag and takes affect only when a Fortran compiler is
        Fortran 2003 compliant.

  * H5Tcreate now supports a string type (fixed-length and variable-length).

  * New APIs, H5Pget_mpio_actual_chunk_opt_mode and H5Pget_mpio_actual_io_mode,
    were added for querying whether/how a collective I/O operation completed.

  * Numerous changes were made to the tools (h5diff, h5repack, h5jam, h5dump).


(asau)

$NetBSD: patch-tools_h5copy_testh5copy.sh,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.

--- tools/h5copy/testh5copy.sh.orig	2012-05-09 15:06:14.000000000 +0000
+++ tools/h5copy/testh5copy.sh
@@ -105,7 +105,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile."

$NetBSD: patch-tools_h5diff_testh5diff.sh,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.

--- tools/h5diff/testh5diff.sh.orig	2012-05-09 15:06:12.000000000 +0000
+++ tools/h5diff/testh5diff.sh
@@ -313,7 +313,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile ."

$NetBSD: patch-tools_h5dump_testh5dump.sh.in,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.

--- tools/h5dump/testh5dump.sh.in.orig	2012-05-09 15:06:02.000000000 +0000
+++ tools/h5dump/testh5dump.sh.in
@@ -448,7 +448,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile"

$NetBSD: patch-tools_h5import_h5importtestutil.sh,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.

--- tools/h5import/h5importtestutil.sh.orig	2012-05-09 15:06:14.000000000 +0000
+++ tools/h5import/h5importtestutil.sh
@@ -115,7 +115,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile"

$NetBSD: patch-tools_h5jam_testh5jam.sh.in,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.
Use portable "=" to test string equality.

--- tools/h5jam/testh5jam.sh.in.orig	2012-05-09 15:06:08.000000000 +0000
+++ tools/h5jam/testh5jam.sh.in
@@ -103,7 +103,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile"
@@ -456,9 +456,9 @@ UNJAMTEST () {
 #
 
 TOOLTEST_OUTPUT() {
-    if [ "$1" == "JAM" ]; then
+    if [ "$1" = "JAM" ]; then
         TOOLCMD=$JAM_BIN/$JAM
-    elif [ "$1" == "UNJAM" ]; then
+    elif [ "$1" = "UNJAM" ]; then
         TOOLCMD=$JAM_BIN/$UNJAM
     fi
     shift

$NetBSD: patch-tools_h5ls_testh5ls.sh.in,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.

--- tools/h5ls/testh5ls.sh.in.orig	2012-05-09 15:06:15.000000000 +0000
+++ tools/h5ls/testh5ls.sh.in
@@ -167,7 +167,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile"

$NetBSD: patch-tools_h5repack_h5repack.sh.in,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.

--- tools/h5repack/h5repack.sh.in.orig	2012-05-09 15:06:03.000000000 +0000
+++ tools/h5repack/h5repack.sh.in
@@ -137,7 +137,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile"

$NetBSD: patch-tools_h5stat_testh5stat.sh.in,v 1.1 2012/10/27 08:54:48 asau Exp $

Use portable construct to check file existence.

--- tools/h5stat/testh5stat.sh.in.orig	2012-05-09 15:06:15.000000000 +0000
+++ tools/h5stat/testh5stat.sh.in
@@ -105,7 +105,7 @@ COPY_TESTFILES_TO_TESTDIR()
         echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
         RET=$?
         if [ $RET -eq 1 ]; then
-            if [ -a $tstfile ]; then
+            if [ -e $tstfile ]; then
                 $CP -f $tstfile $TESTDIR
             else
                 echo "Error: FAILED to copy $tstfile"