Tue Aug 13 19:53:30 2013 UTC ()
Update to R 3.0.1

Changes: many new features and bug fixes.  See NEWS file for details.


(markd)
diff -r1.141 -r1.142 pkgsrc/math/R/Makefile
diff -r1.16 -r1.17 pkgsrc/math/R/PLIST
diff -r1.51 -r1.52 pkgsrc/math/R/distinfo
diff -r1.29 -r1.30 pkgsrc/math/R/patches/patch-ac
diff -r1.15 -r1.16 pkgsrc/math/R/patches/patch-ad
diff -r0 -r1.1 pkgsrc/math/R/patches/patch-src_library_stats_src_cov.c
diff -r0 -r1.1 pkgsrc/math/R/patches/patch-src_nmath_dnbeta.c
diff -r0 -r1.1 pkgsrc/math/R/patches/patch-src_nmath_pnbeta.c
diff -r0 -r1.1 pkgsrc/math/R/patches/patch-src_nmath_pnchisq.c
diff -r1.3 -r1.4 pkgsrc/math/R/patches/patch-src_main_format.c
cvs diff -r1.141 -r1.142 pkgsrc/math/R/Makefile (expand / switch to unified diff)

--- pkgsrc/math/R/Makefile 2013/07/15 02:02:25 1.141
+++ pkgsrc/math/R/Makefile 2013/08/13 19:53:30 1.142
@@ -1,19 +1,18 @@ @@ -1,19 +1,18 @@
1# $NetBSD: Makefile,v 1.141 2013/07/15 02:02:25 ryoon Exp $ 1# $NetBSD: Makefile,v 1.142 2013/08/13 19:53:30 markd Exp $
2 2
3DISTNAME= R-2.15.1 3DISTNAME= R-3.0.1
4PKGREVISION= 7 
5CATEGORIES= math 4CATEGORIES= math
6MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-2/} 5MASTER_SITES= ${MASTER_SITE_R_CRAN:=base/R-3/}
7 6
8MAINTAINER= markd@NetBSD.org 7MAINTAINER= markd@NetBSD.org
9HOMEPAGE= http://www.R-project.org/ 8HOMEPAGE= http://www.R-project.org/
10COMMENT= Statistical language for data analysis and graphics 9COMMENT= Statistical language for data analysis and graphics
11LICENSE= gnu-gpl-v2 10LICENSE= gnu-gpl-v2
12 11
13#needs FPC code not found in older versions of NetBSD 12#needs FPC code not found in older versions of NetBSD
14NOT_FOR_PLATFORM= NetBSD-1.[0-4]*-alpha NetBSD-1.5-alpha \ 13NOT_FOR_PLATFORM= NetBSD-1.[0-4]*-alpha NetBSD-1.5-alpha \
15 NetBSD-1.5.*-alpha NetBSD-1.5[A-U]-alpha 14 NetBSD-1.5.*-alpha NetBSD-1.5[A-U]-alpha
16 15
17PKG_INSTALLATION_TYPES= overwrite pkgviews 16PKG_INSTALLATION_TYPES= overwrite pkgviews
18 17
19BUILD_TARGET= all info 18BUILD_TARGET= all info
cvs diff -r1.16 -r1.17 pkgsrc/math/R/PLIST (expand / switch to unified diff)

--- pkgsrc/math/R/PLIST 2013/04/06 03:16:50 1.16
+++ pkgsrc/math/R/PLIST 2013/08/13 19:53:30 1.17
@@ -1,21 +1,19 @@ @@ -1,21 +1,19 @@
1@comment $NetBSD: PLIST,v 1.16 2013/04/06 03:16:50 markd Exp $ 1@comment $NetBSD: PLIST,v 1.17 2013/08/13 19:53:30 markd Exp $
2bin/R 2bin/R
3bin/Rscript 3bin/Rscript
4info/R-FAQ.info.gz 4info/R-FAQ.info.gz
5info/R-admin.info.gz 5info/R-admin.info.gz
6info/R-data.info.gz 6info/R-data.info.gz
7info/R-exts.info-1.gz 
8info/R-exts.info-2.gz 
9info/R-exts.info.gz 7info/R-exts.info.gz
10info/R-intro.info.gz 8info/R-intro.info.gz
11info/R-ints.info.gz 9info/R-ints.info.gz
12info/R-lang.info.gz 10info/R-lang.info.gz
13lib/R/COPYING 11lib/R/COPYING
14lib/R/NEWS 12lib/R/NEWS
15lib/R/NEWS.pdf 13lib/R/NEWS.pdf
16lib/R/SVN-REVISION 14lib/R/SVN-REVISION
17lib/R/bin/BATCH 15lib/R/bin/BATCH
18lib/R/bin/COMPILE 16lib/R/bin/COMPILE
19lib/R/bin/INSTALL 17lib/R/bin/INSTALL
20lib/R/bin/LINK 18lib/R/bin/LINK
21lib/R/bin/R 19lib/R/bin/R
@@ -62,94 +60,95 @@ lib/R/doc/html/logosm.jpg @@ -62,94 +60,95 @@ lib/R/doc/html/logosm.jpg
62lib/R/doc/html/packages-head-utf8.html 60lib/R/doc/html/packages-head-utf8.html
63lib/R/doc/html/resources.html 61lib/R/doc/html/resources.html
64lib/R/doc/html/right.jpg 62lib/R/doc/html/right.jpg
65lib/R/doc/html/up.jpg 63lib/R/doc/html/up.jpg
66lib/R/doc/manual/R-FAQ.html 64lib/R/doc/manual/R-FAQ.html
67lib/R/doc/manual/R-admin.html 65lib/R/doc/manual/R-admin.html
68lib/R/doc/manual/R-data.html 66lib/R/doc/manual/R-data.html
69lib/R/doc/manual/R-exts.html 67lib/R/doc/manual/R-exts.html
70lib/R/doc/manual/R-intro.html 68lib/R/doc/manual/R-intro.html
71lib/R/doc/manual/R-ints.html 69lib/R/doc/manual/R-ints.html
72lib/R/doc/manual/R-lang.html 70lib/R/doc/manual/R-lang.html
73lib/R/etc/Makeconf 71lib/R/etc/Makeconf
74lib/R/etc/Renviron 72lib/R/etc/Renviron
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79lib/R/include/R_ext/Arith.h 78lib/R/include/R_ext/Arith.h
80lib/R/include/R_ext/BLAS.h 79lib/R/include/R_ext/BLAS.h
81lib/R/include/R_ext/Boolean.h 80lib/R/include/R_ext/Boolean.h
82lib/R/include/R_ext/Callbacks.h 81lib/R/include/R_ext/Callbacks.h
83lib/R/include/R_ext/Complex.h 82lib/R/include/R_ext/Complex.h
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95lib/R/include/R_ext/PrtUtil.h 95lib/R/include/R_ext/PrtUtil.h
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98lib/R/include/R_ext/RConverters.h 
99lib/R/include/R_ext/RS.h 98lib/R/include/R_ext/RS.h
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102lib/R/include/R_ext/Rdynload.h 101lib/R/include/R_ext/Rdynload.h
103lib/R/include/R_ext/Riconv.h 102lib/R/include/R_ext/Riconv.h
104lib/R/include/R_ext/Utils.h 103lib/R/include/R_ext/Utils.h
105lib/R/include/R_ext/Visibility.h 104lib/R/include/R_ext/Visibility.h
106lib/R/include/R_ext/eventloop.h 105lib/R/include/R_ext/eventloop.h
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 140lib/R/library/KernSmooth/po/ko/LC_MESSAGES/R-KernSmooth.mo
 141lib/R/library/KernSmooth/po/pl/LC_MESSAGES/R-KernSmooth.mo
143lib/R/library/MASS/CITATION 142lib/R/library/MASS/CITATION
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154lib/R/library/MASS/NEWS 153lib/R/library/MASS/NEWS
155lib/R/library/MASS/R/MASS 154lib/R/library/MASS/R/MASS
@@ -159,26 +158,28 @@ lib/R/library/MASS/data/Rdata.rdb @@ -159,26 +158,28 @@ lib/R/library/MASS/data/Rdata.rdb
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160lib/R/library/MASS/data/Rdata.rdx 159lib/R/library/MASS/data/Rdata.rdx
161lib/R/library/MASS/help/AnIndex 160lib/R/library/MASS/help/AnIndex
162lib/R/library/MASS/help/MASS.rdb 161lib/R/library/MASS/help/MASS.rdb
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165lib/R/library/MASS/help/paths.rds 164lib/R/library/MASS/help/paths.rds
166lib/R/library/MASS/html/00Index.html 165lib/R/library/MASS/html/00Index.html
167lib/R/library/MASS/html/R.css 166lib/R/library/MASS/html/R.css
168lib/R/library/MASS/libs/MASS.so 167lib/R/library/MASS/libs/MASS.so
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171lib/R/library/MASS/po/fr/LC_MESSAGES/R-MASS.mo 170lib/R/library/MASS/po/fr/LC_MESSAGES/R-MASS.mo
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172lib/R/library/MASS/scripts/ch01.R 173lib/R/library/MASS/scripts/ch01.R
173lib/R/library/MASS/scripts/ch02.R 174lib/R/library/MASS/scripts/ch02.R
174lib/R/library/MASS/scripts/ch03.R 175lib/R/library/MASS/scripts/ch03.R
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179lib/R/library/MASS/scripts/ch08.R 180lib/R/library/MASS/scripts/ch08.R
180lib/R/library/MASS/scripts/ch09.R 181lib/R/library/MASS/scripts/ch09.R
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184lib/R/library/MASS/scripts/ch13.R 185lib/R/library/MASS/scripts/ch13.R
@@ -206,33 +207,32 @@ lib/R/library/Matrix/data/USCounties.R @@ -206,33 +207,32 @@ lib/R/library/Matrix/data/USCounties.R
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215lib/R/library/Matrix/doc/Intro2Matrix.pdf 216lib/R/library/Matrix/doc/Intro2Matrix.pdf
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374lib/R/library/codetools/Meta/links.rds 369lib/R/library/codetools/Meta/links.rds
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382lib/R/library/codetools/help/aliases.rds 377lib/R/library/codetools/help/aliases.rds
@@ -393,87 +388,81 @@ lib/R/library/compiler/Meta/links.rds @@ -393,87 +388,81 @@ lib/R/library/compiler/Meta/links.rds
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434lib/R/library/datasets/html/R.css 420lib/R/library/datasets/html/R.css
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463lib/R/library/foreign/po/fr/LC_MESSAGES/foreign.mo 449lib/R/library/foreign/po/fr/LC_MESSAGES/foreign.mo
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464lib/R/library/grDevices/DESCRIPTION 452lib/R/library/grDevices/DESCRIPTION
465lib/R/library/grDevices/INDEX 453lib/R/library/grDevices/INDEX
466lib/R/library/grDevices/Meta/Rd.rds 454lib/R/library/grDevices/Meta/Rd.rds
 455lib/R/library/grDevices/Meta/demo.rds
467lib/R/library/grDevices/Meta/hsearch.rds 456lib/R/library/grDevices/Meta/hsearch.rds
468lib/R/library/grDevices/Meta/links.rds 457lib/R/library/grDevices/Meta/links.rds
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470lib/R/library/grDevices/Meta/package.rds 459lib/R/library/grDevices/Meta/package.rds
471lib/R/library/grDevices/NAMESPACE 460lib/R/library/grDevices/NAMESPACE
472lib/R/library/grDevices/R/grDevices 461lib/R/library/grDevices/R/grDevices
473lib/R/library/grDevices/R/grDevices.rdb 462lib/R/library/grDevices/R/grDevices.rdb
474lib/R/library/grDevices/R/grDevices.rdx 463lib/R/library/grDevices/R/grDevices.rdx
475lib/R/library/grDevices/afm/CM_boldx_10.afm.gz 464lib/R/library/grDevices/afm/CM_boldx_10.afm.gz
476lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz 465lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz
477lib/R/library/grDevices/afm/CM_italic_10.afm.gz 466lib/R/library/grDevices/afm/CM_italic_10.afm.gz
478lib/R/library/grDevices/afm/CM_regular_10.afm.gz 467lib/R/library/grDevices/afm/CM_regular_10.afm.gz
479lib/R/library/grDevices/afm/CM_symbol_10.afm.gz 468lib/R/library/grDevices/afm/CM_symbol_10.afm.gz
@@ -551,26 +540,28 @@ lib/R/library/grDevices/afm/p052003l.afm @@ -551,26 +540,28 @@ lib/R/library/grDevices/afm/p052003l.afm
551lib/R/library/grDevices/afm/p052004l.afm.gz 540lib/R/library/grDevices/afm/p052004l.afm.gz
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555lib/R/library/grDevices/afm/pobi____.afm.gz 544lib/R/library/grDevices/afm/pobi____.afm.gz
556lib/R/library/grDevices/afm/poi_____.afm.gz 545lib/R/library/grDevices/afm/poi_____.afm.gz
557lib/R/library/grDevices/afm/por_____.afm.gz 546lib/R/library/grDevices/afm/por_____.afm.gz
558lib/R/library/grDevices/afm/s050000l.afm.gz 547lib/R/library/grDevices/afm/s050000l.afm.gz
559lib/R/library/grDevices/afm/sy______.afm.gz 548lib/R/library/grDevices/afm/sy______.afm.gz
560lib/R/library/grDevices/afm/tib_____.afm.gz 549lib/R/library/grDevices/afm/tib_____.afm.gz
561lib/R/library/grDevices/afm/tibi____.afm.gz 550lib/R/library/grDevices/afm/tibi____.afm.gz
562lib/R/library/grDevices/afm/tii_____.afm.gz 551lib/R/library/grDevices/afm/tii_____.afm.gz
563lib/R/library/grDevices/afm/tir_____.afm.gz 552lib/R/library/grDevices/afm/tir_____.afm.gz
 553lib/R/library/grDevices/demo/colors.R
 554lib/R/library/grDevices/demo/hclColors.R
564lib/R/library/grDevices/enc/AdobeStd.enc 555lib/R/library/grDevices/enc/AdobeStd.enc
565lib/R/library/grDevices/enc/AdobeSym.enc 556lib/R/library/grDevices/enc/AdobeSym.enc
566lib/R/library/grDevices/enc/CP1250.enc 557lib/R/library/grDevices/enc/CP1250.enc
567lib/R/library/grDevices/enc/CP1251.enc 558lib/R/library/grDevices/enc/CP1251.enc
568lib/R/library/grDevices/enc/CP1253.enc 559lib/R/library/grDevices/enc/CP1253.enc
569lib/R/library/grDevices/enc/CP1257.enc 560lib/R/library/grDevices/enc/CP1257.enc
570lib/R/library/grDevices/enc/Cyrillic.enc 561lib/R/library/grDevices/enc/Cyrillic.enc
571lib/R/library/grDevices/enc/Greek.enc 562lib/R/library/grDevices/enc/Greek.enc
572lib/R/library/grDevices/enc/ISOLatin1.enc 563lib/R/library/grDevices/enc/ISOLatin1.enc
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576lib/R/library/grDevices/enc/KOI8-R.enc 567lib/R/library/grDevices/enc/KOI8-R.enc
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855lib/R/library/nnet/Meta/Rd.rds 801lib/R/library/nnet/Meta/Rd.rds
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 1336lib/R/library/translations/tr/LC_MESSAGES/R-base.mo
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 1360lib/R/library/translations/zh_CN/LC_MESSAGES/graphics.mo
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 1363lib/R/library/translations/zh_CN/LC_MESSAGES/parallel.mo
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 1365lib/R/library/translations/zh_CN/LC_MESSAGES/stats.mo
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1238lib/R/library/utils/DESCRIPTION 1371lib/R/library/utils/DESCRIPTION
1239lib/R/library/utils/INDEX 1372lib/R/library/utils/INDEX
1240lib/R/library/utils/Meta/Rd.rds 1373lib/R/library/utils/Meta/Rd.rds
1241lib/R/library/utils/Meta/hsearch.rds 1374lib/R/library/utils/Meta/hsearch.rds
1242lib/R/library/utils/Meta/links.rds 1375lib/R/library/utils/Meta/links.rds
1243lib/R/library/utils/Meta/nsInfo.rds 1376lib/R/library/utils/Meta/nsInfo.rds
1244lib/R/library/utils/Meta/package.rds 1377lib/R/library/utils/Meta/package.rds
 1378lib/R/library/utils/Meta/vignette.rds
1245lib/R/library/utils/NAMESPACE 1379lib/R/library/utils/NAMESPACE
1246lib/R/library/utils/R/utils 1380lib/R/library/utils/R/utils
1247lib/R/library/utils/R/utils.rdb 1381lib/R/library/utils/R/utils.rdb
1248lib/R/library/utils/R/utils.rdx 1382lib/R/library/utils/R/utils.rdx
1249lib/R/library/utils/Sweave/Sweave-test-1.Rnw 1383lib/R/library/utils/Sweave/Sweave-test-1.Rnw
1250lib/R/library/utils/Sweave/example-1.Rnw 1384lib/R/library/utils/Sweave/example-1.Rnw
 1385lib/R/library/utils/doc/Sweave.R
 1386lib/R/library/utils/doc/Sweave.Rnw
1251lib/R/library/utils/doc/Sweave.pdf 1387lib/R/library/utils/doc/Sweave.pdf
 1388lib/R/library/utils/doc/index.html
1252lib/R/library/utils/help/AnIndex 1389lib/R/library/utils/help/AnIndex
1253lib/R/library/utils/help/aliases.rds 1390lib/R/library/utils/help/aliases.rds
1254lib/R/library/utils/help/paths.rds 1391lib/R/library/utils/help/paths.rds
1255lib/R/library/utils/help/utils.rdb 1392lib/R/library/utils/help/utils.rdb
1256lib/R/library/utils/help/utils.rdx 1393lib/R/library/utils/help/utils.rdx
1257lib/R/library/utils/html/00Index.html 1394lib/R/library/utils/html/00Index.html
1258lib/R/library/utils/html/R.css 1395lib/R/library/utils/html/R.css
1259lib/R/library/utils/iconvlist 1396lib/R/library/utils/iconvlist
 1397lib/R/library/utils/libs/utils.so
1260lib/R/library/utils/misc/exDIF.csv 1398lib/R/library/utils/misc/exDIF.csv
1261lib/R/library/utils/misc/exDIF.dif 1399lib/R/library/utils/misc/exDIF.dif
1262lib/R/library/utils/po/da/LC_MESSAGES/R-utils.mo 
1263lib/R/library/utils/po/de/LC_MESSAGES/R-utils.mo 
1264lib/R/library/utils/po/en@quot/LC_MESSAGES/R-utils.mo 
1265lib/R/library/utils/po/fr/LC_MESSAGES/R-utils.mo 
1266lib/R/library/utils/po/ja/LC_MESSAGES/R-utils.mo 
1267lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo 
1268lib/R/library/utils/po/pl/LC_MESSAGES/R-utils.mo 
1269lib/R/library/utils/po/pt_BR/LC_MESSAGES/R-utils.mo 
1270lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo 
1271lib/R/library/utils/po/tr/LC_MESSAGES/R-utils.mo 
1272lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo 
1273lib/R/modules/R_X11.so 1400lib/R/modules/R_X11.so
 1401lib/R/modules/R_de.so
1274lib/R/modules/internet.so 1402lib/R/modules/internet.so
1275lib/R/modules/lapack.so 1403lib/R/modules/lapack.so
1276lib/R/modules/vfonts.so 1404lib/R/modules/vfonts.so
1277lib/R/share/R/REMOVE.R 1405lib/R/share/R/REMOVE.R
1278lib/R/share/R/examples-footer.R 1406lib/R/share/R/examples-footer.R
1279lib/R/share/R/examples-header.R 1407lib/R/share/R/examples-header.R
1280lib/R/share/R/nspackloader.R 1408lib/R/share/R/nspackloader.R
1281lib/R/share/R/tests-startup.R 1409lib/R/share/R/tests-startup.R
 1410lib/R/share/dictionaries/en_stats.rds
1282lib/R/share/encodings/Adobe-glyphlist 1411lib/R/share/encodings/Adobe-glyphlist
1283lib/R/share/encodings/character-sets 1412lib/R/share/encodings/character-sets
1284lib/R/share/java/README 1413lib/R/share/java/README
1285lib/R/share/java/getsp.class 1414lib/R/share/java/getsp.class
1286lib/R/share/licenses/AGPL-3 1415lib/R/share/licenses/AGPL-3
1287lib/R/share/licenses/Artistic-1.0 
1288lib/R/share/licenses/Artistic-2.0 1416lib/R/share/licenses/Artistic-2.0
 1417lib/R/share/licenses/BSD_2_clause
 1418lib/R/share/licenses/BSD_3_clause
1289lib/R/share/licenses/GPL-2 1419lib/R/share/licenses/GPL-2
1290lib/R/share/licenses/GPL-3 1420lib/R/share/licenses/GPL-3
1291lib/R/share/licenses/LGPL-2 1421lib/R/share/licenses/LGPL-2
1292lib/R/share/licenses/LGPL-2.1 1422lib/R/share/licenses/LGPL-2.1
1293lib/R/share/licenses/LGPL-3 1423lib/R/share/licenses/LGPL-3
 1424lib/R/share/licenses/MIT
1294lib/R/share/licenses/license.db 1425lib/R/share/licenses/license.db
1295lib/R/share/locale/da/LC_MESSAGES/R.mo 
1296lib/R/share/locale/de/LC_MESSAGES/R.mo 
1297lib/R/share/locale/en/LC_MESSAGES/R.mo 
1298lib/R/share/locale/en@quot/LC_MESSAGES/R.mo 
1299lib/R/share/locale/en_GB/LC_MESSAGES/R.mo 
1300lib/R/share/locale/es/LC_MESSAGES/R.mo 
1301lib/R/share/locale/fr/LC_MESSAGES/R.mo 
1302lib/R/share/locale/it/LC_MESSAGES/R.mo 
1303lib/R/share/locale/ja/LC_MESSAGES/R.mo 
1304lib/R/share/locale/ko/LC_MESSAGES/R.mo 
1305lib/R/share/locale/nn/LC_MESSAGES/R.mo 
1306lib/R/share/locale/pl/LC_MESSAGES/R.mo 
1307lib/R/share/locale/pt_BR/LC_MESSAGES/R.mo 
1308lib/R/share/locale/ru/LC_MESSAGES/R.mo 
1309lib/R/share/locale/tr/LC_MESSAGES/R.mo 
1310lib/R/share/locale/zh_CN/LC_MESSAGES/R.mo 
1311lib/R/share/locale/zh_TW/LC_MESSAGES/R.mo 
1312lib/R/share/make/basepkg.mk 1426lib/R/share/make/basepkg.mk
1313lib/R/share/make/check.mk 1427lib/R/share/make/check.mk
1314lib/R/share/make/clean.mk 1428lib/R/share/make/clean.mk
1315lib/R/share/make/config.mk 1429lib/R/share/make/config.mk
1316lib/R/share/make/lazycomp.mk 1430lib/R/share/make/lazycomp.mk
1317lib/R/share/make/shlib.mk 1431lib/R/share/make/shlib.mk
1318lib/R/share/make/vars.mk 1432lib/R/share/make/vars.mk
1319lib/R/share/make/winshlib.mk 1433lib/R/share/make/winshlib.mk
1320lib/R/share/sh/echo.sh 1434lib/R/share/sh/echo.sh
1321lib/R/share/texmf/bibtex/bib/RJournal.bib 1435lib/R/share/texmf/bibtex/bib/RJournal.bib
1322lib/R/share/texmf/bibtex/bib/Rnews.bib 1436lib/R/share/texmf/bibtex/bib/Rnews.bib
1323lib/R/share/texmf/bibtex/bst/jss.bst 1437lib/R/share/texmf/bibtex/bst/jss.bst
1324lib/R/share/texmf/tex/latex/Rd.sty 1438lib/R/share/texmf/tex/latex/Rd.sty
1325lib/R/share/texmf/tex/latex/Sweave.sty 1439lib/R/share/texmf/tex/latex/Sweave.sty
1326lib/R/share/texmf/tex/latex/jss.cls 1440lib/R/share/texmf/tex/latex/jss.cls
1327lib/R/share/texmf/tex/latex/omsaer.fd 1441lib/R/share/texmf/tex/latex/omsaer.fd
1328lib/R/share/texmf/tex/latex/omsaett.fd 1442lib/R/share/texmf/tex/latex/omsaett.fd
1329lib/R/share/texmf/tex/latex/omscmtt.fd 1443lib/R/share/texmf/tex/latex/omscmtt.fd
1330lib/R/share/texmf/tex/latex/ts1aer.fd 1444lib/R/share/texmf/tex/latex/ts1aer.fd
1331lib/R/share/texmf/tex/latex/ts1aett.fd 1445lib/R/share/texmf/tex/latex/ts1aett.fd
1332lib/R/share/texmf/tex/latex/upquote.sty 1446lib/R/share/texmf/tex/latex/upquote.sty
1333lib/pkgconfig/libR.pc 1447lib/pkgconfig/libR.pc
1334man/man1/R.1 1448man/man1/R.1
1335man/man1/Rscript.1 1449man/man1/Rscript.1
1336@pkgdir lib/R/library/compiler/po/compiler-zh_CN/LC_MESSAGES 
cvs diff -r1.51 -r1.52 pkgsrc/math/R/distinfo (expand / switch to unified diff)

--- pkgsrc/math/R/distinfo 2013/05/05 14:57:27 1.51
+++ pkgsrc/math/R/distinfo 2013/08/13 19:53:30 1.52
@@ -1,8 +1,12 @@ @@ -1,8 +1,12 @@
1$NetBSD: distinfo,v 1.51 2013/05/05 14:57:27 joerg Exp $ 1$NetBSD: distinfo,v 1.52 2013/08/13 19:53:30 markd Exp $
2 2
3SHA1 (R-2.15.1.tar.gz) = f0e6912be6dfc0d1fdc4be66048304d8befe8424 3SHA1 (R-3.0.1.tar.gz) = 5cc65476837926fdf04105954ea94efa53ac85ce
4RMD160 (R-2.15.1.tar.gz) = 84a010906424f3e84b84a71236424a8f2bf1df08 4RMD160 (R-3.0.1.tar.gz) = 09910626891c2962b5c05d204b14d59444da0c3b
5Size (R-2.15.1.tar.gz) = 24592493 bytes 5Size (R-3.0.1.tar.gz) = 25508280 bytes
6SHA1 (patch-ac) = 527234c663ea7f2fe0d6e303cf692aad0276bdbe 6SHA1 (patch-ac) = 25e54a7fc8934d2997ea2eff8836784b45ad2a45
7SHA1 (patch-ad) = 9268c33c999ed39f9e8d0769486706bb920c8253 7SHA1 (patch-ad) = 21c2f74ceb41afa72b0b268ba4b1dcb57f01e106
8SHA1 (patch-src_main_format.c) = 96290cd5f2e509a25ab71cd32854b20a43028cf6 8SHA1 (patch-src_library_stats_src_cov.c) = 23e452472506483ffc33a9c6629274b121cfd161
 9SHA1 (patch-src_main_format.c) = f03012b8fbab34ead3f35143fe782ab7c7b29768
 10SHA1 (patch-src_nmath_dnbeta.c) = f14c188a4b74a38cec9a62f5eb2ba1ab72ad52d3
 11SHA1 (patch-src_nmath_pnbeta.c) = 4a23cb223408d2bb73c6dc42d50659f3589be3ec
 12SHA1 (patch-src_nmath_pnchisq.c) = fdf82ef6967b12eb9f44e246bb8660c9a2b55fd3
cvs diff -r1.29 -r1.30 pkgsrc/math/R/patches/Attic/patch-ac (expand / switch to unified diff)

--- pkgsrc/math/R/patches/Attic/patch-ac 2013/05/05 14:57:27 1.29
+++ pkgsrc/math/R/patches/Attic/patch-ac 2013/08/13 19:53:30 1.30
@@ -1,195 +1,195 @@ @@ -1,195 +1,195 @@
1$NetBSD: patch-ac,v 1.29 2013/05/05 14:57:27 joerg Exp $ 1$NetBSD: patch-ac,v 1.30 2013/08/13 19:53:30 markd Exp $
2 2
3--- configure.orig 2012-06-14 22:05:51.000000000 +0000 3--- configure.orig 2013-05-08 22:06:02.000000000 +0000
4+++ configure 4+++ configure
5@@ -3976,7 +3976,7 @@ fi 5@@ -3967,7 +3967,7 @@ fi
6  6
7  7
8 if test "${want_R_shlib}" = yes; then 8 if test "${want_R_shlib}" = yes; then
9- LIBR="-L\$(R_HOME)/lib\$(R_ARCH) -lR" 9- LIBR="-L\$(R_HOME)/lib\$(R_ARCH) -lR"
10+ LIBR="-Wl,-R${prefix}/lib/R/lib\$(R_ARCH) -L\$(R_HOME)/lib\$(R_ARCH) -lR" 10+ LIBR="-Wl,-R${prefix}/lib/R/lib\$(R_ARCH) -L\$(R_HOME)/lib\$(R_ARCH) -lR"
11 else 11 else
12 LIBR= 12 LIBR=
13 fi 13 fi
14@@ -4040,7 +4040,7 @@ fi 14@@ -4031,7 +4031,7 @@ fi
15 if test "x${want_lto}" != xno; then 15 if test "x${want_lto}" != xno; then
16 LTO=-flto 16 LTO=-flto
17 fi 17 fi
18-if test "x${want_lto}" == xyes; then 18-if test "x${want_lto}" == xyes; then
19+if test "x${want_lto}" = xyes; then 19+if test "x${want_lto}" = xyes; then
20 LTOALL=-flto 20 LTOALL=-flto
21 fi 21 fi
22  22
23@@ -22963,6 +22963,11 @@ fi 23@@ -23015,6 +23015,11 @@ fi
24 done 24 done
25 ;; 25 ;;
26 -[lLR]*) 26 -[lLR]*)
27+ case $ac_arg in 27+ case $ac_arg in
28+ -R*) 28+ -R*)
29+ ac_arg="${wl}$ac_arg" 29+ ac_arg="${wl}$ac_arg"
30+ ;; 30+ ;;
31+ esac 31+ esac
32 ac_exists=false 32 ac_exists=false
33 for ac_i in $ac_cv_f77_libs; do 33 for ac_i in $ac_cv_f77_libs; do
34 if test x"$ac_arg" = x"$ac_i"; then 34 if test x"$ac_arg" = x"$ac_i"; then
35@@ -23928,6 +23933,9 @@ cat > conftest.c <<EOF 35@@ -23980,6 +23985,9 @@ cat > conftest.c <<EOF
36  36
37 extern void F77_SYMBOL(cftest)(int *a, int *b, double *x, double *y); 37 extern void F77_SYMBOL(cftest)(int *a, int *b, double *x, double *y);
38  38
39+int MAIN_ () { return 0; } 39+int MAIN_ () { return 0; }
40+int MAIN__ () { return 0; } 40+int MAIN__ () { return 0; }
41+ 41+
42 int main () { 42 int main () {
43 int a[3] = {17, 237, 2000000000}, b[2], res = 0; 43 int a[3] = {17, 237, 2000000000}, b[2], res = 0;
44 double x[3] = {3.14159265, 123.456789, 2.3e34}, z[3]; 44 double x[3] = {3.14159265, 123.456789, 2.3e34}, z[3];
45@@ -24023,6 +24031,9 @@ typedef struct { 45@@ -24075,6 +24083,9 @@ typedef struct {
46  46
47 extern void F77_SYMBOL(cftest)(Rcomplex *x); 47 extern void F77_SYMBOL(cftest)(Rcomplex *x);
48  48
49+int MAIN_ () { return 0; } 49+int MAIN_ () { return 0; }
50+int MAIN__ () { return 0; } 50+int MAIN__ () { return 0; }
51+ 51+
52 int main () { 52 int main () {
53 Rcomplex z[3]; 53 Rcomplex z[3];
54  54
55@@ -26224,12 +26235,12 @@ $as_echo "$as_me: WARNING: Use of flat n 55@@ -26279,12 +26290,12 @@ $as_echo "$as_me: WARNING: Use of flat n
56 SHLIB_LIBADD="-lcc_dynamic" 56 SHLIB_LIBADD="-lcc_dynamic"
57 fi 57 fi
58 ;; 58 ;;
59- freebsd*) 59- freebsd*)
60- main_ldflags="-export-dynamic" 60- main_ldflags="-export-dynamic"
61+ freebsd*|dragonfly*) 61+ freebsd*|dragonfly*)
62+ main_ldflags="${wl}-export-dynamic" 62+ main_ldflags="${wl}-export-dynamic"
63 shlib_ldflags="-shared" 63 shlib_ldflags="-shared"
64 ;; 64 ;;
65 gnu*) # GNU Hurd 65 gnu*) # GNU Hurd
66- main_ldflags="-export-dynamic" 66- main_ldflags="-export-dynamic"
67+ main_ldflags="${wl}-export-dynamic" 67+ main_ldflags="${wl}-export-dynamic"
68 ;; 68 ;;
69 hpux*) 69 hpux*)
70 SHLIB_EXT=".sl" 70 SHLIB_EXT=".sl"
71@@ -26312,8 +26323,15 @@ $as_echo "$as_me: WARNING: Use of flat n 71@@ -26367,8 +26378,15 @@ $as_echo "$as_me: WARNING: Use of flat n
72 fcpicflags= 72 fcpicflags=
73 ;; 73 ;;
74 netbsd*) 74 netbsd*)
75+ fpicflags="-fPIC" 75+ fpicflags="-fPIC"
76+ case "${host_cpu}" in 76+ case "${host_cpu}" in
77+ powerpc*) 77+ powerpc*)
78+ cpicflags="-fPIC" 78+ cpicflags="-fPIC"
79+ ;; 79+ ;;
80+ esac 80+ esac
81+ 81+
82 if ${CPP} - -dM < /dev/null | grep __ELF__ >/dev/null ; then 82 if ${CPP} - -dM < /dev/null | grep __ELF__ >/dev/null ; then
83- main_ldflags="-export-dynamic" 83- main_ldflags="-export-dynamic"
84+ main_ldflags="${wl}-export-dynamic" 84+ main_ldflags="${wl}-export-dynamic"
85 shlib_ldflags="-shared" 85 shlib_ldflags="-shared"
86 else 86 else
87 shlib_ldflags="-Bshareable" 87 shlib_ldflags="-Bshareable"
88@@ -26335,22 +26353,22 @@ $as_echo "$as_me: WARNING: Use of flat n 88@@ -26390,22 +26408,22 @@ $as_echo "$as_me: WARNING: Use of flat n
89 solaris*) 89 solaris*)
90 ## SPARC has only an 8k global object table, 1024 entries on 64-bit, 90 ## SPARC has only an 8k global object table, 1024 entries on 64-bit,
91 ## so need PIC not pic. They are the same on other Solaris platforms. 91 ## so need PIC not pic. They are the same on other Solaris platforms.
92- shlib_ldflags="-G" 92- shlib_ldflags="-G"
93- shlib_cxxldflags="-G" 93- shlib_cxxldflags="-G"
94 if test "${GCC}" = yes; then 94 if test "${GCC}" = yes; then
95+ shlib_ldflags="-shared" 95+ shlib_ldflags="-shared"
96+ shlib_cxxldflags="-shared" 96+ shlib_cxxldflags="-shared"
97 cpicflags="-fPIC" 97 cpicflags="-fPIC"
98 ld=`${CC} -print-prog-name=ld` 98 ld=`${CC} -print-prog-name=ld`
99 ldoutput=`${ld} -v 2>&1 | grep GNU` 99 ldoutput=`${ld} -v 2>&1 | grep GNU`
100 if test -n "${ldoutput}"; then 100 if test -n "${ldoutput}"; then
101 main_ldflags="-Wl,-export-dynamic" 101 main_ldflags="-Wl,-export-dynamic"
102- shlib_ldflags="-shared" 102- shlib_ldflags="-shared"
103- shlib_cxxldflags="-shared" 103- shlib_cxxldflags="-shared"
104 else 104 else
105 ## it seems gcc c 4.6.2 needs this with Solaris linker 105 ## it seems gcc c 4.6.2 needs this with Solaris linker
106 shlib_ldflags="-shared" 106 shlib_ldflags="-shared"
107 shlib_cxxldflags="-shared" 107 shlib_cxxldflags="-shared"
108 fi 108 fi
109 else 109 else
110+ shlib_ldflags="-G" 110+ shlib_ldflags="-G"
111+ shlib_cxxldflags="-G" 111+ shlib_cxxldflags="-G"
112 cpicflags="-KPIC" 112 cpicflags="-KPIC"
113 if test "`basename ${CXX}`" = "CC" ; then 113 if test "`basename ${CXX}`" = "CC" ; then
114 ## Forte version 7 needs -lCstd: Forte 6 does not. 114 ## Forte version 7 needs -lCstd: Forte 6 does not.
115@@ -26407,7 +26425,7 @@ fi 115@@ -26466,7 +26484,7 @@ fi
116 : ${CPICFLAGS="${cpicflags}"} 116 : ${CPICFLAGS="${cpicflags}"}
117 if test -z "${CPICFLAGS}"; then 117 if test -z "${CPICFLAGS}"; then
118 case "${host_os}" in 118 case "${host_os}" in
119- aix*|cygwin*|irix*|mingw*|osf*) 119- aix*|cygwin*|irix*|mingw*|osf*)
120+ aix*|cygwin*|irix*|mingw*|osf*|darwin*) 120+ aix*|cygwin*|irix*|mingw*|osf*|darwin*)
121 ;; 121 ;;
122 *) 122 *)
123 { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: I could not determine CPICFLAGS." >&5 123 { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: I could not determine CPICFLAGS." >&5
124@@ -26916,6 +26934,14 @@ _ACEOF 124@@ -26984,6 +27002,14 @@ _ACEOF
125 ## Cygwin has rintl but not nearbyintl 125 ## Cygwin has rintl but not nearbyintl
126 for ac_func in expm1 hypot log1p log2 log10 nearbyint nearbyintl powl rint rintl 126 for ac_func in expm1 hypot log1p log1pl log2 log10 nearbyint nearbyintl powl rint rintl
127 do 127 do
128+case $ac_func in 128+case $ac_func in
129+expm1|log1p|log2|log10|nearbyint|nearbyintl|rint|rintl) 129+expm1|log1p|log2|log10|nearbyint|nearbyintl|rint|rintl)
130+ args="x" 130+ args="x"
131+ ;; 131+ ;;
132+hypot|powl) 132+hypot|powl)
133+ args="x,x" 133+ args="x,x"
134+ ;; 134+ ;;
135+esac 135+esac
136 as_ac_Symbol=`$as_echo "ac_cv_have_decl_$ac_func" | $as_tr_sh` 136 as_ac_Symbol=`$as_echo "ac_cv_have_decl_$ac_func" | $as_tr_sh`
137 { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $ac_func exists and is declared" >&5 137 { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $ac_func exists and is declared" >&5
138 $as_echo_n "checking whether $ac_func exists and is declared... " >&6; } 138 $as_echo_n "checking whether $ac_func exists and is declared... " >&6; }
139@@ -26925,24 +26951,12 @@ else 139@@ -26993,24 +27019,12 @@ else
140 cat confdefs.h - <<_ACEOF >conftest.$ac_ext 140 cat confdefs.h - <<_ACEOF >conftest.$ac_ext
141 /* end confdefs.h. */ 141 /* end confdefs.h. */
142 #include <math.h> 142 #include <math.h>
143+volatile long double x; 143+volatile long double x;
144  144
145-#ifdef F77_DUMMY_MAIN 145-#ifdef F77_DUMMY_MAIN
146- 146-
147-# ifdef __cplusplus 147-# ifdef __cplusplus
148- extern "C" 148- extern "C"
149-# endif 149-# endif
150- int F77_DUMMY_MAIN() { return 1; } 150- int F77_DUMMY_MAIN() { return 1; }
151- 151-
152-#endif 152-#endif
153 int 153 int
154 main () 154 main ()
155 { 155 {
156-#ifndef $ac_func 156-#ifndef $ac_func
157- char *p = (char *) $ac_func; 157- char *p = (char *) $ac_func;
158-#endif 158-#endif
159- 159-
160- ; 160- ;
161- return 0; 161- return 0;
162+ return $ac_func($args); 162+ return $ac_func($args);
163 } 163 }
164 _ACEOF 164 _ACEOF
165 if ac_fn_c_try_link "$LINENO"; then : 165 if ac_fn_c_try_link "$LINENO"; then :
166@@ -29539,6 +29553,15 @@ cat > conftest.c <<EOF 166@@ -29657,6 +29671,15 @@ cat > conftest.c <<EOF
167 #endif 167 #endif
168 extern void F77_SYMBOL(test1)(int *iflag); 168 extern void F77_SYMBOL(test1)(int *iflag);
169  169
170+#ifdef F77_DUMMY_MAIN 170+#ifdef F77_DUMMY_MAIN
171+ 171+
172+# ifdef __cplusplus 172+# ifdef __cplusplus
173+ extern "C" 173+ extern "C"
174+# endif 174+# endif
175+ int F77_DUMMY_MAIN() { return 1; } 175+ int F77_DUMMY_MAIN() { return 1; }
176+ 176+
177+#endif 177+#endif
178+ 178+
179 int main () { 179 int main () {
180 int iflag; 180 int iflag;
181 F77_SYMBOL(test1)(&iflag); 181 F77_SYMBOL(test1)(&iflag);
182@@ -29606,6 +29629,14 @@ else 182@@ -29721,6 +29744,14 @@ else
183 #else 183 #else
184 # define F77_SYMBOL(x) x 184 # define F77_SYMBOL(x) x
185 #endif 185 #endif
186+#ifdef F77_DUMMY_MAIN 186+#ifdef F77_DUMMY_MAIN
187+ 187+
188+# ifdef __cplusplus 188+# ifdef __cplusplus
189+ extern "C" 189+ extern "C"
190+# endif 190+# endif
191+ int F77_DUMMY_MAIN() { return 1; } 191+ int F77_DUMMY_MAIN() { return 1; }
192+ 192+
193+#endif 193+#endif
194 void F77_SYMBOL(xerbla)(char *srname, int *info) 194 void F77_SYMBOL(xerbla)(char *srname, int *info)
195 {} 195 {}
cvs diff -r1.15 -r1.16 pkgsrc/math/R/patches/Attic/patch-ad (expand / switch to unified diff)

--- pkgsrc/math/R/patches/Attic/patch-ad 2012/12/17 09:08:47 1.15
+++ pkgsrc/math/R/patches/Attic/patch-ad 2013/08/13 19:53:30 1.16
@@ -1,21 +1,21 @@ @@ -1,21 +1,21 @@
1$NetBSD: patch-ad,v 1.15 2012/12/17 09:08:47 wen Exp $ 1$NetBSD: patch-ad,v 1.16 2013/08/13 19:53:30 markd Exp $
2Adjust EXTRA_LIBS and @WANT_R_SHLIB_TRUE@R_bin_LDADD 2Adjust EXTRA_LIBS and @WANT_R_SHLIB_TRUE@R_bin_LDADD
3--- src/main/Makefile.in.orig 2012-03-01 23:02:24.000000000 +0000 3
 4--- src/main/Makefile.in.orig 2013-03-05 23:02:40.000000000 +0000
4+++ src/main/Makefile.in 5+++ src/main/Makefile.in
5@@ -98,14 +98,14 @@ EXTRA_STATIC_LIBS = \ 6@@ -95,13 +95,13 @@ EXTRA_STATIC_LIBS = \
6 $(R_ZLIBS) $(R_BZLIBS) $(R_PCRE) $(R_TRE) $(R_XDR) $(R_XZ) $(R_LIBINTL) 7 $(R_ZLIBS) $(R_BZLIBS) $(R_PCRE) $(R_TRE) $(R_XDR) $(R_XZ) $(R_LIBINTL)
7 STATIC_LIBS = $(MAIN_LIBS) $(EXTRA_STATIC_LIBS) 8 STATIC_LIBS = $(MAIN_LIBS) $(EXTRA_STATIC_LIBS)
8  9
9-EXTRA_LIBS = $(BLAS_LIBS) $(FLIBS) $(R_XTRA_LIBS) @LIBINTL@ $(READLINE_LIBS) $(LIBS) 10-EXTRA_LIBS = $(BLAS_LIBS) $(FLIBS) $(R_XTRA_LIBS) @LIBINTL@ $(READLINE_LIBS) $(LIBS)
10+EXTRA_LIBS = $(BLAS_LIBS) $(FLIBS) $(R_XTRA_LIBS) @LIBINTL@ $(READLINE_LIBS) $(LIBS) @LIBMULTITHREAD@ 11+EXTRA_LIBS = $(BLAS_LIBS) $(FLIBS) $(R_XTRA_LIBS) @LIBINTL@ $(READLINE_LIBS) $(LIBS) @LIBMULTITHREAD@
11  12
12 R_binary = R.bin 13 R_binary = R.bin
13 R_bin_OBJECTS = Rmain.o @BUILD_LTO_TRUE@@WANT_R_SHLIB_FALSE@$(OBJECTS) 14 R_bin_OBJECTS = Rmain.o @WANT_R_SHLIB_FALSE@$(OBJECTS)
14 @BUILD_LTO_TRUE@@WANT_R_SHLIB_FALSE@R_bin_LDADD = $(MAIN_OBJS) $(EXTRA_STATIC_LIBS) $(EXTRA_LIBS) 15 @WANT_R_SHLIB_FALSE@R_bin_LDADD = $(MAIN_OBJS) $(EXTRA_STATIC_LIBS) $(EXTRA_LIBS)
15 @BUILD_LTO_FALSE@@WANT_R_SHLIB_FALSE@R_bin_LDADD = libR.a $(EXTRA_LIBS) 
16 ## Linked against -lRblas becasue -lR is and otherwise ld complains. 16 ## Linked against -lRblas becasue -lR is and otherwise ld complains.
17-@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ -lR @BLAS_SHLIB_TRUE@-lRblas 17-@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ -lR @BLAS_SHLIB_TRUE@-lRblas
18+@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ ${COMPILER_RPATH_FLAG}$(Rexeclibdir) -lR @BLAS_SHLIB_TRUE@-lRblas 18+@WANT_R_SHLIB_TRUE@R_bin_LDADD = -L../../lib@R_ARCH@ ${COMPILER_RPATH_FLAG}$(Rexeclibdir) -lR @BLAS_SHLIB_TRUE@-lRblas
19 @BUILD_LTO_FALSE@R_bin_DEPENDENCIES =@WANT_R_SHLIB_FALSE@ libR.a @USE_EXPORTFILES_TRUE@ $(top_builddir)/etc/R.exp 19 @BUILD_LTO_FALSE@R_bin_DEPENDENCIES =@WANT_R_SHLIB_FALSE@ libR.a @USE_EXPORTFILES_TRUE@ $(top_builddir)/etc/R.exp
20  20
21 libR_la = libR$(DYLIB_EXT) 21 libR_la = libR$(DYLIB_EXT)
File Added: pkgsrc/math/R/patches/Attic/patch-src_library_stats_src_cov.c
$NetBSD: patch-src_library_stats_src_cov.c,v 1.1 2013/08/13 19:53:30 markd Exp $

No sqrtl() in NetBSD 6.x

--- src/library/stats/src/cov.c.orig	2013-03-05 23:02:24.000000000 +0000
+++ src/library/stats/src/cov.c
@@ -27,6 +27,10 @@
 
 #include "statsR.h"
 
+#ifdef __NetBSD__
+#define sqrtl sqrt
+#endif
+
 static SEXP corcov(SEXP x, SEXP y, SEXP na_method, SEXP kendall, Rboolean cor);
File Added: pkgsrc/math/R/patches/Attic/patch-src_nmath_dnbeta.c
$NetBSD: patch-src_nmath_dnbeta.c,v 1.1 2013/08/13 19:53:30 markd Exp $

No logl() in NetBSD 6.x

--- src/nmath/dnbeta.c.orig	2013-03-05 23:02:41.000000000 +0000
+++ src/nmath/dnbeta.c
@@ -118,7 +118,7 @@ double dnbeta(double x, double a, double
 	sum += term;
     } while (term > sum * eps);
 
-#ifdef HAVE_LONG_DOUBLE
+#if defined(HAVE_LONG_DOUBLE) && ! defined(__NetBSD__)
     return R_D_exp((double)(p_k + logl(sum)));
 #else
     return R_D_exp((double)(p_k + log(sum)));
File Added: pkgsrc/math/R/patches/Attic/patch-src_nmath_pnbeta.c
$NetBSD: patch-src_nmath_pnbeta.c,v 1.1 2013/08/13 19:53:30 markd Exp $

No logl() in NetBSD 6.x

--- src/nmath/pnbeta.c.orig	2013-03-05 23:02:41.000000000 +0000
+++ src/nmath/pnbeta.c
@@ -92,7 +92,7 @@ pnbeta2(double x, double o_x, double a, 
 
     /* return R_DT_val(ans), but we want to warn about cancellation here */
     if (lower_tail)
-#ifdef HAVE_LONG_DOUBLE
+#if defined(HAVE_LONG_DOUBLE) && ! defined(__NetBSD__)
 	return (double) (log_p ? logl(ans) : ans);
 #else
 	return log_p ? log(ans) : ans;
File Added: pkgsrc/math/R/patches/Attic/patch-src_nmath_pnchisq.c
$NetBSD: patch-src_nmath_pnchisq.c,v 1.1 2013/08/13 19:53:30 markd Exp $

No expl() in NetBSD 6.x.

--- src/nmath/pnchisq.c.orig	2013-03-05 23:02:41.000000000 +0000
+++ src/nmath/pnchisq.c
@@ -27,7 +27,11 @@
  */
 
 #ifdef HAVE_LONG_DOUBLE
+#ifdef __NetBSD__
+# define EXP exp
+#else
 # define EXP expl
+#endif
 # define FABS fabsl
 #else
 # define EXP exp
cvs diff -r1.3 -r1.4 pkgsrc/math/R/patches/Attic/patch-src_main_format.c (expand / switch to unified diff)

--- pkgsrc/math/R/patches/Attic/patch-src_main_format.c 2012/12/17 09:08:47 1.3
+++ pkgsrc/math/R/patches/Attic/patch-src_main_format.c 2013/08/13 19:53:30 1.4
@@ -1,29 +1,29 @@ @@ -1,29 +1,29 @@
1$NetBSD: patch-src_main_format.c,v 1.3 2012/12/17 09:08:47 wen Exp $ 1$NetBSD: patch-src_main_format.c,v 1.4 2013/08/13 19:53:30 markd Exp $
2 2
3NetBSD does not have rintl() or floorl() so use the OpenBSD implementation 3NetBSD does not have rintl() or floorl() so use the OpenBSD implementation
4of rintl() in that case. The same case exists for DragonFly. 4of rintl() in that case. The same case exists for DragonFly.
5 5
6--- src/main/format.c.orig 2012-04-15 22:05:34.000000000 +0000 6--- src/main/format.c.orig 2013-03-05 23:02:40.000000000 +0000
7+++ src/main/format.c 7+++ src/main/format.c
8@@ -130,6 +130,7 @@ void formatInteger(int *x, int n, int *f 8@@ -130,6 +130,7 @@ void formatInteger(int *x, R_xlen_t n, i
9 # define R_nearbyintl rintl 9 # define R_nearbyintl rintl
10 # else 10 # else
11 # define R_nearbyintl private_nearbyintl 11 # define R_nearbyintl private_nearbyintl
12+# if !defined(__NetBSD__) && !defined(__DragonFly__) 12+# if !defined(__NetBSD__) && !defined(__DragonFly__)
13 long double private_nearbyintl(long double x) 13 LDOUBLE private_nearbyintl(LDOUBLE x)
14 { 14 {
15 long double x1; 15 LDOUBLE x1;
16@@ -142,6 +143,55 @@ long double private_nearbyintl(long doub 16@@ -142,6 +143,55 @@ LDOUBLE private_nearbyintl(LDOUBLE x)
17 if (x/2.0 == floorl(x/2.0)) return(x); else return(x1); 17 if (x/2.0 == floorl(x/2.0)) return(x); else return(x1);
18 } 18 }
19 } 19 }
20+# else 20+# else
21+#include <machine/ieee.h> 21+#include <machine/ieee.h>
22+ 22+
23+#if LDBL_MAX_EXP != 0x4000 23+#if LDBL_MAX_EXP != 0x4000
24+/* We also require the usual bias, min exp and expsign packing. */ 24+/* We also require the usual bias, min exp and expsign packing. */
25+#error "Unsupported long double format" 25+#error "Unsupported long double format"
26+#endif 26+#endif
27+ 27+
28+#define BIAS (LDBL_MAX_EXP - 1) 28+#define BIAS (LDBL_MAX_EXP - 1)
29+ 29+