| @@ -1,65 +1,67 @@ | | | @@ -1,65 +1,67 @@ |
1 | # $NetBSD: Makefile,v 1.28 2014/06/02 12:51:38 obache Exp $ | | 1 | # $NetBSD: Makefile,v 1.29 2014/07/17 12:12:26 wen Exp $ |
2 | | | 2 | |
3 | DISTNAME= BioPerl-1.6.923 | | 3 | DISTNAME= BioPerl-1.6.924 |
4 | PKGNAME= ${DISTNAME:tl} | | 4 | PKGNAME= ${DISTNAME:tl} |
5 | PKGREVISION= 2 | | | |
6 | CATEGORIES= biology perl5 | | 5 | CATEGORIES= biology perl5 |
7 | MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/} | | 6 | MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/} |
8 | | | 7 | |
9 | MAINTAINER= filip@joyent.com | | 8 | MAINTAINER= filip@joyent.com |
10 | HOMEPAGE= http://www.bioperl.org/ | | 9 | HOMEPAGE= http://www.bioperl.org/ |
11 | COMMENT= Perl tools for computational molecular biology | | 10 | COMMENT= Perl tools for computational molecular biology |
12 | LICENSE= ${PERL5_LICENSE} | | 11 | LICENSE= ${PERL5_LICENSE} |
13 | | | 12 | |
14 | BUILD_DEPENDS+= {perl>=5.19.6,p5-Module-Build>0.42}:../../devel/p5-Module-Build | | 13 | BUILD_DEPENDS+= {perl>=5.19.6,p5-Module-Build>0.42}:../../devel/p5-Module-Build |
15 | BUILD_DEPENDS+= p5-Test-Most-[0-9]*:../../devel/p5-Test-Most | | 14 | BUILD_DEPENDS+= p5-Test-Most-[0-9]*:../../devel/p5-Test-Most |
16 | | | 15 | |
17 | DEPENDS+= p5-Algorithm-Munkres-[0-9]*:../../math/p5-Algorithm-Munkres | | 16 | DEPENDS+= p5-Algorithm-Munkres-[0-9]*:../../math/p5-Algorithm-Munkres |
18 | DEPENDS+= p5-Array-Compare-[0-9]*:../../devel/p5-Array-Compare | | 17 | DEPENDS+= p5-Array-Compare-[0-9]*:../../devel/p5-Array-Compare |
19 | DEPENDS+= p5-Bio-ASN1-EntrezGene-[0-9]*:../../biology/p5-Bio-ASN1-EntrezGene | | 18 | DEPENDS+= p5-Bio-ASN1-EntrezGene-[0-9]*:../../biology/p5-Bio-ASN1-EntrezGene |
20 | DEPENDS+= p5-Clone-[0-9]*:../../devel/p5-Clone | | 19 | DEPENDS+= p5-Clone-[0-9]*:../../devel/p5-Clone |
21 | DEPENDS+= p5-Convert-Binary-C-[0-9]*:../../devel/p5-Convert-Binary-C | | 20 | DEPENDS+= p5-Convert-Binary-C-[0-9]*:../../devel/p5-Convert-Binary-C |
22 | DEPENDS+= {perl>=5,p5-DB_File-[0-9]*}:../../databases/p5-DB_File | | 21 | DEPENDS+= {perl>=5,p5-DB_File-[0-9]*}:../../databases/p5-DB_File |
23 | DEPENDS+= p5-Data-Stag>=0.11:../../devel/p5-Data-Stag | | 22 | DEPENDS+= p5-Data-Stag>=0.11:../../devel/p5-Data-Stag |
24 | DEPENDS+= p5-Error-[0-9]*:../../devel/p5-Error | | 23 | DEPENDS+= p5-Error-[0-9]*:../../devel/p5-Error |
25 | DEPENDS+= {perl>=5.10.1,p5-ExtUtils-Manifest>=1.52}:../../devel/p5-ExtUtils-Manifest | | 24 | DEPENDS+= {perl>=5.10.1,p5-ExtUtils-Manifest>=1.52}:../../devel/p5-ExtUtils-Manifest |
26 | DEPENDS+= p5-GD-[0-9]*:../../graphics/p5-GD | | 25 | DEPENDS+= p5-GD-[0-9]*:../../graphics/p5-GD |
27 | DEPENDS+= p5-Graph>=0.50:../../devel/p5-Graph | | 26 | DEPENDS+= p5-Graph>=0.50:../../devel/p5-Graph |
28 | DEPENDS+= p5-GraphViz-[0-9]*:../../graphics/p5-GraphViz | | 27 | DEPENDS+= p5-GraphViz-[0-9]*:../../graphics/p5-GraphViz |
29 | DEPENDS+= p5-HTML-Parser>=3:../../www/p5-HTML-Parser | | 28 | DEPENDS+= p5-HTML-Parser>=3:../../www/p5-HTML-Parser |
30 | DEPENDS+= p5-HTML-TableExtract-[0-9]*:../../www/p5-HTML-TableExtract | | 29 | DEPENDS+= p5-HTML-TableExtract-[0-9]*:../../www/p5-HTML-TableExtract |
31 | DEPENDS+= p5-IO-String-[0-9]*:../../devel/p5-IO-String | | 30 | DEPENDS+= p5-IO-String-[0-9]*:../../devel/p5-IO-String |
32 | DEPENDS+= p5-List-MoreUtils-[0-9]*:../../devel/p5-List-MoreUtils | | 31 | DEPENDS+= p5-List-MoreUtils-[0-9]*:../../devel/p5-List-MoreUtils |
33 | DEPENDS+= p5-PostScript-[0-9]*:../../print/p5-PostScript | | 32 | DEPENDS+= p5-PostScript-[0-9]*:../../print/p5-PostScript |
34 | DEPENDS+= p5-SOAP-Lite-[0-9]*:../../net/p5-SOAP-Lite | | 33 | DEPENDS+= p5-SOAP-Lite-[0-9]*:../../net/p5-SOAP-Lite |
35 | DEPENDS+= p5-SVG-Graph>=0.01:../../graphics/p5-SVG-Graph | | 34 | DEPENDS+= p5-SVG-Graph>=0.01:../../graphics/p5-SVG-Graph |
36 | DEPENDS+= p5-SVG>=2.26:../../graphics/p5-SVG | | 35 | DEPENDS+= p5-SVG>=2.26:../../graphics/p5-SVG |
37 | DEPENDS+= p5-Set-Scalar-[0-9]*:../../devel/p5-Set-Scalar | | 36 | DEPENDS+= p5-Set-Scalar-[0-9]*:../../devel/p5-Set-Scalar |
38 | DEPENDS+= p5-Sort-Naturally-[0-9]*:../../devel/p5-Sort-Naturally | | 37 | DEPENDS+= p5-Sort-Naturally-[0-9]*:../../devel/p5-Sort-Naturally |
39 | DEPENDS+= p5-Spreadsheet-ParseExcel-[0-9]*:../../math/p5-Spreadsheet-ParseExcel | | 38 | DEPENDS+= p5-Spreadsheet-ParseExcel-[0-9]*:../../math/p5-Spreadsheet-ParseExcel |
40 | DEPENDS+= {perl>=5.8.1,p5-Storable>=2.05}:../../devel/p5-Storable | | 39 | DEPENDS+= {perl>=5.8.1,p5-Storable>=2.05}:../../devel/p5-Storable |
41 | DEPENDS+= p5-XML-Parser-[0-9]*:../../textproc/p5-XML-Parser | | 40 | DEPENDS+= p5-XML-Parser-[0-9]*:../../textproc/p5-XML-Parser |
42 | DEPENDS+= p5-XML-SAX-Writer-[0-9]*:../../textproc/p5-XML-SAX-Writer | | 41 | DEPENDS+= p5-XML-SAX-Writer-[0-9]*:../../textproc/p5-XML-SAX-Writer |
43 | DEPENDS+= p5-XML-SAX>=0.15:../../textproc/p5-XML-SAX | | 42 | DEPENDS+= p5-XML-SAX>=0.15:../../textproc/p5-XML-SAX |
44 | DEPENDS+= p5-XML-Simple-[0-9]*:../../textproc/p5-XML-Simple | | 43 | DEPENDS+= p5-XML-Simple-[0-9]*:../../textproc/p5-XML-Simple |
45 | DEPENDS+= p5-XML-Twig-[0-9]*:../../textproc/p5-XML-Twig | | 44 | DEPENDS+= p5-XML-Twig-[0-9]*:../../textproc/p5-XML-Twig |
46 | DEPENDS+= p5-XML-Writer>=0.4:../../textproc/p5-XML-Writer | | 45 | DEPENDS+= p5-XML-Writer>=0.4:../../textproc/p5-XML-Writer |
47 | DEPENDS+= p5-YAML-[0-9]*:../../textproc/p5-YAML | | 46 | DEPENDS+= p5-YAML-[0-9]*:../../textproc/p5-YAML |
48 | DEPENDS+= p5-libwww-[0-9]*:../../www/p5-libwww | | 47 | DEPENDS+= p5-libwww-[0-9]*:../../www/p5-libwww |
49 | DEPENDS+= p5-libxml-[0-9]*:../../textproc/p5-libxml | | 48 | DEPENDS+= p5-libxml-[0-9]*:../../textproc/p5-libxml |
50 | | | 49 | |
| | | 50 | # Suggested |
| | | 51 | DEPENDS+= p5-XML-DOM>=0:../../textproc/p5-XML-DOM |
| | | 52 | |
51 | USE_TOOLS+= pax | | 53 | USE_TOOLS+= pax |
52 | | | 54 | |
53 | REPLACE_PERL+= scripts/*/*.pl | | 55 | REPLACE_PERL+= scripts/*/*.pl Bio/LiveSeq/Chain.pm |
54 | | | 56 | |
55 | PERL5_MODULE_TYPE= Module::Build | | 57 | PERL5_MODULE_TYPE= Module::Build |
56 | PERL5_PACKLIST= auto/Bio/.packlist | | 58 | PERL5_PACKLIST= auto/Bio/.packlist |
57 | | | 59 | |
58 | INSTALLATION_DIRS= share/examples/bioperl | | 60 | INSTALLATION_DIRS= share/examples/bioperl |
59 | | | 61 | |
60 | post-install: | | 62 | post-install: |
61 | cd ${WRKSRC}/examples && ${PAX} -rw . ${DESTDIR}${PREFIX}/share/examples/bioperl | | 63 | cd ${WRKSRC}/examples && ${PAX} -rw . ${DESTDIR}${PREFIX}/share/examples/bioperl |
62 | | | 64 | |
63 | .include "options.mk" | | 65 | .include "options.mk" |
64 | .include "../../lang/perl5/module.mk" | | 66 | .include "../../lang/perl5/module.mk" |
65 | .include "../../mk/bsd.pkg.mk" | | 67 | .include "../../mk/bsd.pkg.mk" |