Thu Feb 25 11:21:12 2016 UTC ()
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(jperkin)
diff -r1.4 -r1.5 pkgsrc/biology/plink/Makefile
cvs diff -r1.4 -r1.5 pkgsrc/biology/plink/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/plink/Makefile 2015/12/29 04:54:37 1.4
+++ pkgsrc/biology/plink/Makefile 2016/02/25 11:21:11 1.5
@@ -1,40 +1,37 @@ @@ -1,40 +1,37 @@
1# $NetBSD: Makefile,v 1.4 2015/12/29 04:54:37 dholland Exp $ 1# $NetBSD: Makefile,v 1.5 2016/02/25 11:21:11 jperkin Exp $
2 2
3DISTNAME= plink-1.07-src 3DISTNAME= plink-1.07-src
4PKGNAME= $(DISTNAME:-src=) 4PKGNAME= $(DISTNAME:-src=)
5CATEGORIES= biology 5CATEGORIES= biology
6MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/ 6MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
7EXTRACT_SUFX= .zip 7EXTRACT_SUFX= .zip
8 8
9MAINTAINER= jwbacon@tds.net 9MAINTAINER= jwbacon@tds.net
10HOMEPAGE= http://pngu.mgh.harvard.edu/~purcell/plink/ 10HOMEPAGE= http://pngu.mgh.harvard.edu/~purcell/plink/
11COMMENT= Whole-genome association analysis toolset 11COMMENT= Whole-genome association analysis toolset
12LICENSE= gnu-gpl-v2 12LICENSE= gnu-gpl-v2
13 13
14USE_LANGUAGES= c c++ fortran77 14USE_LANGUAGES= c c++ fortran77
15USE_TOOLS+= gmake 15USE_TOOLS+= gmake
16 16
17CXXFLAGS+= -Dfopen64=fopen 17CXXFLAGS+= -Dfopen64=fopen
18 18
19MAKE_FLAGS+= LIBDL=${DL_LIBS:Q} 19MAKE_FLAGS+= LIBDL=${DL_LIBS:Q}
20 20
21LIB_LAPACK= -L${LOCALBASE}/lib ${COMPILER_RPATH_FLAG}${LOCALBASE}/lib -llapack -lblas -lf2c 21LIB_LAPACK= -L${LOCALBASE}/lib ${COMPILER_RPATH_FLAG}${LOCALBASE}/lib -llapack -lblas -lf2c
22MAKE_FLAGS+= WITH_LAPACK=1 LIB_LAPACK=${LIB_LAPACK:Q} 22MAKE_FLAGS+= WITH_LAPACK=1 LIB_LAPACK=${LIB_LAPACK:Q}
23 23
24.include "../../mk/bsd.prefs.mk" 24MAKE_ENV.SunOS+= LIB="-lsocket -lnsl"
25.if ${OPSYS} == "SunOS" 
26MAKE_ENV+= LIB="-lsocket -lnsl" 
27.endif 
28 25
29INSTALLATION_DIRS= bin 26INSTALLATION_DIRS= bin
30 27
31do-install: 28do-install:
32 ${INSTALL_PROGRAM} ${WRKSRC}/plink ${DESTDIR}${PREFIX}/bin 29 ${INSTALL_PROGRAM} ${WRKSRC}/plink ${DESTDIR}${PREFIX}/bin
33 30
34do-test: 31do-test:
35 cd $(WRKSRC) && ./plink --file test 32 cd $(WRKSRC) && ./plink --file test
36 cd $(WRKSRC) && ./plink --file test --freq 33 cd $(WRKSRC) && ./plink --file test --freq
37 cd $(WRKSRC) && ./plink --file test --assoc 34 cd $(WRKSRC) && ./plink --file test --assoc
38 cd $(WRKSRC) && ./plink --file test --make-bed 35 cd $(WRKSRC) && ./plink --file test --make-bed
39 36
40.include "../../devel/libf2c/buildlink3.mk" 37.include "../../devel/libf2c/buildlink3.mk"