Sun Feb 11 15:50:59 2018 UTC ()
plinkseq: use https


(wiz)
diff -r1.5 -r1.6 pkgsrc/biology/plinkseq/Makefile
cvs diff -r1.5 -r1.6 pkgsrc/biology/plinkseq/Makefile (switch to unified diff)

--- pkgsrc/biology/plinkseq/Makefile 2018/01/17 12:10:37 1.5
+++ pkgsrc/biology/plinkseq/Makefile 2018/02/11 15:50:59 1.6
@@ -1,38 +1,38 @@ @@ -1,38 +1,38 @@
1# $NetBSD: Makefile,v 1.5 2018/01/17 12:10:37 jperkin Exp $ 1# $NetBSD: Makefile,v 1.6 2018/02/11 15:50:59 wiz Exp $
2 2
3DISTNAME= plinkseq-0.08 3DISTNAME= plinkseq-0.08
4PKGREVISION= 2 4PKGREVISION= 2
5CATEGORIES= biology 5CATEGORIES= biology
6MASTER_SITES= http://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/ 6MASTER_SITES= https://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/
7 7
8MAINTAINER= jwbacon@tds.net 8MAINTAINER= jwbacon@tds.net
9HOMEPAGE= http://atgu.mgh.harvard.edu/plinkseq/ 9HOMEPAGE= https://atgu.mgh.harvard.edu/plinkseq/
10COMMENT= C/C++ library for working with human genetic variation data 10COMMENT= C/C++ library for working with human genetic variation data
11LICENSE= gnu-gpl-v2 # Assuming same as plink. No info on web. 11LICENSE= gnu-gpl-v2 # Assuming same as plink. No info on web.
12 12
13GNU_CONFIGURE= yes 13GNU_CONFIGURE= yes
14USE_LIBTOOL= yes 14USE_LIBTOOL= yes
15USE_LANGUAGES= c c++ 15USE_LANGUAGES= c c++
16USE_TOOLS= bash:run 16USE_TOOLS= bash:run
17REPLACE_BASH= browser/pbrowse.in index/index.in 17REPLACE_BASH= browser/pbrowse.in index/index.in
18 18
19LDFLAGS.SunOS+= -lsocket -lnsl 19LDFLAGS.SunOS+= -lsocket -lnsl
20 20
21.include "../../mk/bsd.prefs.mk" 21.include "../../mk/bsd.prefs.mk"
22 22
23.if ${OPSYS} != "Linux" 23.if ${OPSYS} != "Linux"
24BUILDLINK_TRANSFORM= rm:-ldl 24BUILDLINK_TRANSFORM= rm:-ldl
25.endif 25.endif
26 26
27# Put missing protocol description files in place: 27# Put missing protocol description files in place:
28post-extract: 28post-extract:
29 ${CP} ${FILESDIR}/pp.proto ${WRKSRC}/lib/ 29 ${CP} ${FILESDIR}/pp.proto ${WRKSRC}/lib/
30 ${CP} ${FILESDIR}/variant.proto ${WRKSRC}/lib/ 30 ${CP} ${FILESDIR}/variant.proto ${WRKSRC}/lib/
31 31
32# Regenerate: 32# Regenerate:
33pre-build: 33pre-build:
34 cd ${WRKSRC}/lib && protoc --cpp_out=. pp.proto && mv pp.pb.cc pp.pb.cpp 34 cd ${WRKSRC}/lib && protoc --cpp_out=. pp.proto && mv pp.pb.cc pp.pb.cpp
35 cd ${WRKSRC}/lib && protoc --cpp_out=. variant.proto && mv variant.pb.cc variant.pb.cpp 35 cd ${WRKSRC}/lib && protoc --cpp_out=. variant.proto && mv variant.pb.cc variant.pb.cpp
36 36
37.include "../../devel/protobuf/buildlink3.mk" 37.include "../../devel/protobuf/buildlink3.mk"
38.include "../../mk/bsd.pkg.mk" 38.include "../../mk/bsd.pkg.mk"