Sun Jan 13 22:06:42 2019 UTC ()
Multiple packages: Replace obsolete maintainer email

jwbacon@tds.net ==> bacon@NetBSD.org


(bacon)
diff -r1.4 -r1.5 pkgsrc/biology/cdhit/Makefile
diff -r1.7 -r1.8 pkgsrc/biology/plink/Makefile
diff -r1.7 -r1.8 pkgsrc/biology/plinkseq/Makefile
diff -r1.32 -r1.33 pkgsrc/devel/libctl/Makefile
diff -r1.10 -r1.11 pkgsrc/devel/swig2/Makefile
diff -r1.5 -r1.6 pkgsrc/math/arpack/Makefile
cvs diff -r1.4 -r1.5 pkgsrc/biology/cdhit/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/cdhit/Makefile 2018/08/22 09:42:59 1.4
+++ pkgsrc/biology/cdhit/Makefile 2019/01/13 22:06:42 1.5
@@ -1,26 +1,26 @@ @@ -1,26 +1,26 @@
1# $NetBSD: Makefile,v 1.4 2018/08/22 09:42:59 wiz Exp $ 1# $NetBSD: Makefile,v 1.5 2019/01/13 22:06:42 bacon Exp $
2# 2#
3########################################################### 3###########################################################
4# Generated by fbsd2pkg # 4# Generated by fbsd2pkg #
5########################################################### 5###########################################################
6 6
7DISTNAME= cdhit-4.6.4 7DISTNAME= cdhit-4.6.4
8PKGREVISION= 2 8PKGREVISION= 2
9CATEGORIES= biology 9CATEGORIES= biology
10MASTER_SITES= ${MASTER_SITE_GITHUB:=weizhongli/} 10MASTER_SITES= ${MASTER_SITE_GITHUB:=weizhongli/}
11GITHUB_TAG= V${PKGVERSION_NOREV} 11GITHUB_TAG= V${PKGVERSION_NOREV}
12 12
13MAINTAINER= jwbacon@tds.net 13MAINTAINER= bacon@NetBSD.org
14HOMEPAGE= http://weizhong-lab.ucsd.edu/cd-hit/ 14HOMEPAGE= http://weizhong-lab.ucsd.edu/cd-hit/
15COMMENT= Clustering and comparing protein or nucleotide sequences 15COMMENT= Clustering and comparing protein or nucleotide sequences
16LICENSE= gnu-gpl-v2 16LICENSE= gnu-gpl-v2
17 17
18USE_LANGUAGES= c++ 18USE_LANGUAGES= c++
19USE_TOOLS+= bash:run gmake perl 19USE_TOOLS+= bash:run gmake perl
20REPLACE_PERL= *.pl 20REPLACE_PERL= *.pl
21 21
22# Restore default overridden by GITHUB_TAG 22# Restore default overridden by GITHUB_TAG
23WRKSRC= ${WRKDIR}/${DISTNAME} 23WRKSRC= ${WRKDIR}/${DISTNAME}
24 24
25SUBST_CLASSES+= compiler 25SUBST_CLASSES+= compiler
26SUBST_STAGE.compiler= pre-configure 26SUBST_STAGE.compiler= pre-configure
cvs diff -r1.7 -r1.8 pkgsrc/biology/plink/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/plink/Makefile 2018/01/01 01:18:03 1.7
+++ pkgsrc/biology/plink/Makefile 2019/01/13 22:06:42 1.8
@@ -1,22 +1,22 @@ @@ -1,22 +1,22 @@
1# $NetBSD: Makefile,v 1.7 2018/01/01 01:18:03 rillig Exp $ 1# $NetBSD: Makefile,v 1.8 2019/01/13 22:06:42 bacon Exp $
2 2
3DISTNAME= plink-1.07-src 3DISTNAME= plink-1.07-src
4PKGNAME= ${DISTNAME:-src=} 4PKGNAME= ${DISTNAME:-src=}
5CATEGORIES= biology 5CATEGORIES= biology
6#MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/ 6#MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
7EXTRACT_SUFX= .zip 7EXTRACT_SUFX= .zip
8 8
9MAINTAINER= jwbacon@tds.net 9MAINTAINER= bacon@NetBSD.org
10#HOMEPAGE= http://pngu.mgh.harvard.edu/~purcell/plink/ 10#HOMEPAGE= http://pngu.mgh.harvard.edu/~purcell/plink/
11COMMENT= Whole-genome association analysis toolset 11COMMENT= Whole-genome association analysis toolset
12LICENSE= gnu-gpl-v2 12LICENSE= gnu-gpl-v2
13 13
14USE_LANGUAGES= c c++ fortran77 14USE_LANGUAGES= c c++ fortran77
15USE_TOOLS+= gmake 15USE_TOOLS+= gmake
16 16
17CXXFLAGS+= -Dfopen64=fopen 17CXXFLAGS+= -Dfopen64=fopen
18 18
19MAKE_FLAGS+= LIBDL=${DL_LIBS:Q} 19MAKE_FLAGS+= LIBDL=${DL_LIBS:Q}
20 20
21LIB_LAPACK= -L${LOCALBASE}/lib ${COMPILER_RPATH_FLAG}${LOCALBASE}/lib -llapack -lblas -lf2c 21LIB_LAPACK= -L${LOCALBASE}/lib ${COMPILER_RPATH_FLAG}${LOCALBASE}/lib -llapack -lblas -lf2c
22MAKE_FLAGS+= WITH_LAPACK=1 LIB_LAPACK=${LIB_LAPACK:Q} 22MAKE_FLAGS+= WITH_LAPACK=1 LIB_LAPACK=${LIB_LAPACK:Q}
cvs diff -r1.7 -r1.8 pkgsrc/biology/plinkseq/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/plinkseq/Makefile 2018/08/04 21:42:28 1.7
+++ pkgsrc/biology/plinkseq/Makefile 2019/01/13 22:06:42 1.8
@@ -1,21 +1,21 @@ @@ -1,21 +1,21 @@
1# $NetBSD: Makefile,v 1.7 2018/08/04 21:42:28 minskim Exp $ 1# $NetBSD: Makefile,v 1.8 2019/01/13 22:06:42 bacon Exp $
2 2
3DISTNAME= plinkseq-0.08 3DISTNAME= plinkseq-0.08
4PKGREVISION= 3 4PKGREVISION= 3
5CATEGORIES= biology 5CATEGORIES= biology
6MASTER_SITES= https://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/ 6MASTER_SITES= https://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/
7 7
8MAINTAINER= jwbacon@tds.net 8MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://atgu.mgh.harvard.edu/plinkseq/ 9HOMEPAGE= https://atgu.mgh.harvard.edu/plinkseq/
10COMMENT= C/C++ library for working with human genetic variation data 10COMMENT= C/C++ library for working with human genetic variation data
11LICENSE= gnu-gpl-v2 # Assuming same as plink. No info on web. 11LICENSE= gnu-gpl-v2 # Assuming same as plink. No info on web.
12 12
13GNU_CONFIGURE= yes 13GNU_CONFIGURE= yes
14USE_LIBTOOL= yes 14USE_LIBTOOL= yes
15USE_LANGUAGES= c c++11 15USE_LANGUAGES= c c++11
16USE_TOOLS= bash:run 16USE_TOOLS= bash:run
17REPLACE_BASH= browser/pbrowse.in index/index.in 17REPLACE_BASH= browser/pbrowse.in index/index.in
18 18
19LDFLAGS.SunOS+= -lsocket -lnsl 19LDFLAGS.SunOS+= -lsocket -lnsl
20 20
21.include "../../mk/bsd.prefs.mk" 21.include "../../mk/bsd.prefs.mk"
cvs diff -r1.32 -r1.33 pkgsrc/devel/libctl/Makefile (expand / switch to unified diff)

--- pkgsrc/devel/libctl/Makefile 2016/09/15 14:32:40 1.32
+++ pkgsrc/devel/libctl/Makefile 2019/01/13 22:06:42 1.33
@@ -1,21 +1,21 @@ @@ -1,21 +1,21 @@
1# $NetBSD: Makefile,v 1.32 2016/09/15 14:32:40 wiz Exp $ 1# $NetBSD: Makefile,v 1.33 2019/01/13 22:06:42 bacon Exp $
2 2
3DISTNAME= libctl-3.2.2 3DISTNAME= libctl-3.2.2
4PKGREVISION= 1 4PKGREVISION= 1
5CATEGORIES= devel 5CATEGORIES= devel
6MASTER_SITES= http://ab-initio.mit.edu/libctl/ 6MASTER_SITES= http://ab-initio.mit.edu/libctl/
7 7
8MAINTAINER= jwbacon@tds.net 8MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= http://ab-initio.mit.edu/libctl/ 9HOMEPAGE= http://ab-initio.mit.edu/libctl/
10COMMENT= Guile-based flexible control file library for scientific simulations 10COMMENT= Guile-based flexible control file library for scientific simulations
11LICENSE= gnu-gpl-v2 11LICENSE= gnu-gpl-v2
12 12
13GNU_CONFIGURE= yes 13GNU_CONFIGURE= yes
14 14
15USE_LANGUAGES= c fortran77 15USE_LANGUAGES= c fortran77
16 16
17USE_LIBTOOL= yes 17USE_LIBTOOL= yes
18USE_TOOLS+= pkg-config 18USE_TOOLS+= pkg-config
19TEST_TARGET= check 19TEST_TARGET= check
20 20
21INSTALLATION_DIRS= share/doc/libctl 21INSTALLATION_DIRS= share/doc/libctl
cvs diff -r1.10 -r1.11 pkgsrc/devel/swig2/Makefile (expand / switch to unified diff)

--- pkgsrc/devel/swig2/Makefile 2017/05/04 12:21:45 1.10
+++ pkgsrc/devel/swig2/Makefile 2019/01/13 22:06:42 1.11
@@ -1,22 +1,22 @@ @@ -1,22 +1,22 @@
1# $NetBSD: Makefile,v 1.10 2017/05/04 12:21:45 jperkin Exp $ 1# $NetBSD: Makefile,v 1.11 2019/01/13 22:06:42 bacon Exp $
2 2
3DISTNAME= swig-2.0.12 3DISTNAME= swig-2.0.12
4PKGNAME= ${DISTNAME:S/swig-/swig2-/} 4PKGNAME= ${DISTNAME:S/swig-/swig2-/}
5PKGREVISION= 1 5PKGREVISION= 1
6CATEGORIES= devel 6CATEGORIES= devel
7MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=swig/} 7MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=swig/}
8 8
9MAINTAINER= jwbacon@tds.net 9MAINTAINER= bacon@NetBSD.org
10HOMEPAGE= http://www.swig.org/ 10HOMEPAGE= http://www.swig.org/
11COMMENT= Simplified Wrapper and Interface Generator (version 2) 11COMMENT= Simplified Wrapper and Interface Generator (version 2)
12LICENSE= 2-clause-bsd 12LICENSE= 2-clause-bsd
13 13
14CONFLICTS= swig-build-[0-9]* 14CONFLICTS= swig-build-[0-9]*
15 15
16# This package mostly can replace swig (1), but it is likely not 16# This package mostly can replace swig (1), but it is likely not
17# entirely compatible (per upstream). So the plan is to keep 17# entirely compatible (per upstream). So the plan is to keep
18# devel/swig and devel/swig2 both for a while. This package is 18# devel/swig and devel/swig2 both for a while. This package is
19# configured to install swig as "swig2", so that swig and swig2 can be 19# configured to install swig as "swig2", so that swig and swig2 can be
20# installed in parallel. The downside of that is that depending 20# installed in parallel. The downside of that is that depending
21# packages must check for and use swig2. Thus, the decision about 21# packages must check for and use swig2. Thus, the decision about
22# naming is open to being revisited. 22# naming is open to being revisited.
cvs diff -r1.5 -r1.6 pkgsrc/math/arpack/Attic/Makefile (expand / switch to unified diff)

--- pkgsrc/math/arpack/Attic/Makefile 2017/04/14 17:49:28 1.5
+++ pkgsrc/math/arpack/Attic/Makefile 2019/01/13 22:06:42 1.6
@@ -1,23 +1,23 @@ @@ -1,23 +1,23 @@
1# $NetBSD: Makefile,v 1.5 2017/04/14 17:49:28 joerg Exp $ 1# $NetBSD: Makefile,v 1.6 2019/01/13 22:06:42 bacon Exp $
2 2
3DISTNAME= arpack96 3DISTNAME= arpack96
4PKGNAME= arpack-96 4PKGNAME= arpack-96
5PKGREVISION= 2 5PKGREVISION= 2
6CATEGORIES= math 6CATEGORIES= math
7MASTER_SITES= http://www.caam.rice.edu/software/ARPACK/SRC/ 7MASTER_SITES= http://www.caam.rice.edu/software/ARPACK/SRC/
8DISTFILES= arpack96.tar.gz patch.tar.gz 8DISTFILES= arpack96.tar.gz patch.tar.gz
9 9
10MAINTAINER= jwbacon@tds.net 10MAINTAINER= bacon@NetBSD.org
11HOMEPAGE= http://www.caam.rice.edu/software/ARPACK/SRC/ 11HOMEPAGE= http://www.caam.rice.edu/software/ARPACK/SRC/
12COMMENT= Library of subroutines to solve eigenvalue problems 12COMMENT= Library of subroutines to solve eigenvalue problems
13LICENSE= original-bsd 13LICENSE= original-bsd
14 14
15WRKSRC= ${WRKDIR}/ARPACK 15WRKSRC= ${WRKDIR}/ARPACK
16USE_LANGUAGES= fortran77 16USE_LANGUAGES= fortran77
17MAKE_FILE= ${FILESDIR}/Makefile 17MAKE_FILE= ${FILESDIR}/Makefile
18 18
19USE_LIBTOOL= yes 19USE_LIBTOOL= yes
20 20
21INSTALLATION_DIRS= lib 21INSTALLATION_DIRS= lib
22 22
23# Patches must be extracted AFTER the main dist to overwrite files 23# Patches must be extracted AFTER the main dist to overwrite files