Wed May 1 12:38:54 2019 UTC ()
biology/kallisto: Switch from archivers/szip to archivers/libaec

libaec is a BSD-licensed drop-in replacement for the non-redistributable szip


(bacon)
diff -r1.1 -r1.2 pkgsrc/biology/kallisto/Makefile
cvs diff -r1.1 -r1.2 pkgsrc/biology/kallisto/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/kallisto/Makefile 2018/12/21 19:00:56 1.1
+++ pkgsrc/biology/kallisto/Makefile 2019/05/01 12:38:54 1.2
@@ -1,16 +1,17 @@ @@ -1,16 +1,17 @@
1# $NetBSD: Makefile,v 1.1 2018/12/21 19:00:56 bacon Exp $ 1# $NetBSD: Makefile,v 1.2 2019/05/01 12:38:54 bacon Exp $
2 2
3DISTNAME= kallisto-${PV} 3DISTNAME= kallisto-${PV}
 4PKGREVISION= 1
4CATEGORIES= biology 5CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=pachterlab/} 6MASTER_SITES= ${MASTER_SITE_GITHUB:=pachterlab/}
6GITHUB_TAG= v${PV} 7GITHUB_TAG= v${PV}
7 8
8MAINTAINER= bacon@NetBSD.org 9MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://pachterlab.github.io/kallisto/ 10HOMEPAGE= https://pachterlab.github.io/kallisto/
10COMMENT= Quantify abundances of transcripts from RNA-Seq data 11COMMENT= Quantify abundances of transcripts from RNA-Seq data
11LICENSE= 2-clause-bsd 12LICENSE= 2-clause-bsd
12 13
13USE_LANGUAGES= c c++ 14USE_LANGUAGES= c c++
14USE_TOOLS+= pax 15USE_TOOLS+= pax
15USE_CMAKE= yes 16USE_CMAKE= yes
16 17
@@ -23,16 +24,16 @@ PV= 0.45.0 @@ -23,16 +24,16 @@ PV= 0.45.0
23DATADIR= ${PREFIX}/share/kallisto 24DATADIR= ${PREFIX}/share/kallisto
24 25
25INSTALLATION_DIRS= bin ${DATADIR} 26INSTALLATION_DIRS= bin ${DATADIR}
26 27
27post-extract: 28post-extract:
28 ${CP} ${FILESDIR}/kallisto-test ${WRKSRC} 29 ${CP} ${FILESDIR}/kallisto-test ${WRKSRC}
29 30
30post-install: 31post-install:
31 ${INSTALL_SCRIPT} ${WRKSRC}/kallisto-test ${DESTDIR}${PREFIX}/bin 32 ${INSTALL_SCRIPT} ${WRKSRC}/kallisto-test ${DESTDIR}${PREFIX}/bin
32 cd ${WRKSRC} && pax -rw test ${DESTDIR}${DATADIR} 33 cd ${WRKSRC} && pax -rw test ${DESTDIR}${DATADIR}
33 34
34.include "../../biology/htslib/buildlink3.mk" 35.include "../../biology/htslib/buildlink3.mk"
35.include "../../devel/hdf5/buildlink3.mk" 36.include "../../devel/hdf5/buildlink3.mk"
36.include "../../archivers/szip/buildlink3.mk" 37.include "../../archivers/libaec/buildlink3.mk"
37.include "../../devel/zlib/buildlink3.mk" 38.include "../../devel/zlib/buildlink3.mk"
38.include "../../mk/bsd.pkg.mk" 39.include "../../mk/bsd.pkg.mk"