Mon May 25 05:18:35 2020 UTC ()
biology/fastp: document possible array[char] bug


(rillig)
diff -r1.1 -r1.2 pkgsrc/biology/fastp/Makefile
cvs diff -r1.1 -r1.2 pkgsrc/biology/fastp/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/fastp/Makefile 2019/05/04 16:15:25 1.1
+++ pkgsrc/biology/fastp/Makefile 2020/05/25 05:18:35 1.2
@@ -1,23 +1,29 @@ @@ -1,23 +1,29 @@
1# $NetBSD: Makefile,v 1.1 2019/05/04 16:15:25 bacon Exp $ 1# $NetBSD: Makefile,v 1.2 2020/05/25 05:18:35 rillig Exp $
2 2
3DISTNAME= fastp-0.20.0 3DISTNAME= fastp-0.20.0
4CATEGORIES= biology 4CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=OpenGene/} 5MASTER_SITES= ${MASTER_SITE_GITHUB:=OpenGene/}
6GITHUB_TAG= v${PKGVERSION_NOREV} 6GITHUB_TAG= v${PKGVERSION_NOREV}
7 7
8MAINTAINER= bacon@NetBSD.org 8MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://github.com/OpenGene/fastp 9HOMEPAGE= https://github.com/OpenGene/fastp
10COMMENT= Ultra-fast all-in-one FASTQ preprocessor 10COMMENT= Ultra-fast all-in-one FASTQ preprocessor
11LICENSE= mit 11LICENSE= mit
12 12
13USE_LANGUAGES= c c++ 13USE_LANGUAGES= c c++
14USE_TOOLS+= gmake 14USE_TOOLS+= gmake
15BUILD_TARGET= fastp 15BUILD_TARGET= fastp
16PTHREAD_AUTO_VARS= yes 16PTHREAD_AUTO_VARS= yes
17 17
 18# src/stats.cpp: In member function 'void Stats::statRead(Read*)':
 19# src/stats.cpp:248:29: error: array subscript has type 'char' [-Werror=char-subscripts]
 20# mCycleQ30Bases[b][i]++;
 21# Maybe fix this later.
 22BUILDLINK_TRANSFORM+= rm:-Werror=char-subscripts
 23
18post-install: 24post-install:
19 ${STRIP} ${DESTDIR}${PREFIX}/bin/fastp 25 ${STRIP} ${DESTDIR}${PREFIX}/bin/fastp
20 26
21.include "../../devel/zlib/buildlink3.mk" 27.include "../../devel/zlib/buildlink3.mk"
22.include "../../mk/pthread.buildlink3.mk" 28.include "../../mk/pthread.buildlink3.mk"
23.include "../../mk/bsd.pkg.mk" 29.include "../../mk/bsd.pkg.mk"