Tue Nov 3 16:41:26 2020 UTC ()
New package, maeparser-1.4.2.

maeparser is a parser for Schrodinger Maestro files.

Structure files (.mae,.maegz,.mae.gz) can contain multiple structures
delimited by "f_m_ct".  See MaeConstants.hpp for standard block and property
names.


(bsiegert)
diff -r1.56 -r1.57 pkgsrc/biology/Makefile
diff -r0 -r1.1 pkgsrc/biology/maeparser/DESCR
diff -r0 -r1.1 pkgsrc/biology/maeparser/Makefile
diff -r0 -r1.1 pkgsrc/biology/maeparser/PLIST
diff -r0 -r1.1 pkgsrc/biology/maeparser/buildlink3.mk
diff -r0 -r1.1 pkgsrc/biology/maeparser/distinfo
cvs diff -r1.56 -r1.57 pkgsrc/biology/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/Makefile 2020/08/10 18:18:46 1.56
+++ pkgsrc/biology/Makefile 2020/11/03 16:41:26 1.57
@@ -1,14 +1,14 @@ @@ -1,14 +1,14 @@
1# $NetBSD: Makefile,v 1.56 2020/08/10 18:18:46 brook Exp $ 1# $NetBSD: Makefile,v 1.57 2020/11/03 16:41:26 bsiegert Exp $
2# 2#
3 3
4COMMENT= Software for the biological sciences 4COMMENT= Software for the biological sciences
5 5
6SUBDIR+= R-popbio 6SUBDIR+= R-popbio
7SUBDIR+= arka 7SUBDIR+= arka
8SUBDIR+= azara 8SUBDIR+= azara
9SUBDIR+= bcftools 9SUBDIR+= bcftools
10SUBDIR+= bioperl 10SUBDIR+= bioperl
11SUBDIR+= bodr 11SUBDIR+= bodr
12SUBDIR+= bwa 12SUBDIR+= bwa
13SUBDIR+= canu 13SUBDIR+= canu
14SUBDIR+= cdhit 14SUBDIR+= cdhit
@@ -20,26 +20,27 @@ SUBDIR+= fastDNAml @@ -20,26 +20,27 @@ SUBDIR+= fastDNAml
20SUBDIR+= fastp 20SUBDIR+= fastp
21SUBDIR+= fluctuate 21SUBDIR+= fluctuate
22SUBDIR+= gabedit 22SUBDIR+= gabedit
23SUBDIR+= genesplicer 23SUBDIR+= genesplicer
24SUBDIR+= glimmer 24SUBDIR+= glimmer
25SUBDIR+= gnome-chemistry-utils 25SUBDIR+= gnome-chemistry-utils
26SUBDIR+= gp 26SUBDIR+= gp
27SUBDIR+= gromacs 27SUBDIR+= gromacs
28SUBDIR+= hisat2 28SUBDIR+= hisat2
29SUBDIR+= hmmer 29SUBDIR+= hmmer
30SUBDIR+= htslib 30SUBDIR+= htslib
31SUBDIR+= kallisto 31SUBDIR+= kallisto
32SUBDIR+= lucy 32SUBDIR+= lucy
 33SUBDIR+= maeparser
33SUBDIR+= mopac 34SUBDIR+= mopac
34SUBDIR+= mpqc 35SUBDIR+= mpqc
35SUBDIR+= mummer 36SUBDIR+= mummer
36SUBDIR+= ncbi-blast+ 37SUBDIR+= ncbi-blast+
37SUBDIR+= nut 38SUBDIR+= nut
38SUBDIR+= openbabel 39SUBDIR+= openbabel
39SUBDIR+= p5-Bio-ASN1-EntrezGene 40SUBDIR+= p5-Bio-ASN1-EntrezGene
40SUBDIR+= pdbalign 41SUBDIR+= pdbalign
41SUBDIR+= phylip 42SUBDIR+= phylip
42SUBDIR+= plink 43SUBDIR+= plink
43SUBDIR+= plinkseq 44SUBDIR+= plinkseq
44SUBDIR+= primer3 45SUBDIR+= primer3
45SUBDIR+= profit 46SUBDIR+= profit
File Added: pkgsrc/biology/maeparser/DESCR
maeparser is a parser for Schrodinger Maestro files.

Structure files (.mae,.maegz,.mae.gz) can contain multiple structures
delimited by "f_m_ct".  See MaeConstants.hpp for standard block and property
names.
File Added: pkgsrc/biology/maeparser/Makefile
# $NetBSD: Makefile,v 1.1 2020/11/03 16:41:26 bsiegert Exp $

GITHUB_TAG=	v${PKGVERSION_NOREV}
DISTNAME=	maeparser-1.2.4
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_GITHUB:=schrodinger/}

MAINTAINER=	bsiegert@NetBSD.org
HOMEPAGE=	https://github.com/schrodinger/maeparser/
COMMENT=	Parser for Maestro file format
LICENSE=	mit

USE_CMAKE=	yes
USE_LANGUAGES=	c c++


.include "../../devel/boost-libs/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
File Added: pkgsrc/biology/maeparser/PLIST
@comment $NetBSD: PLIST,v 1.1 2020/11/03 16:41:26 bsiegert Exp $
include/maeparser/Buffer.hpp
include/maeparser/MaeBlock.hpp
include/maeparser/MaeConstants.hpp
include/maeparser/MaeParser.hpp
include/maeparser/MaeParserConfig.hpp
include/maeparser/Reader.hpp
include/maeparser/Writer.hpp
lib/cmake/maeparser-config-noconfig.cmake
lib/cmake/maeparser-config.cmake
lib/libmaeparser.so
lib/libmaeparser.so.1
lib/libmaeparser.so.${PKGVERSION}
File Added: pkgsrc/biology/maeparser/buildlink3.mk
# $NetBSD: buildlink3.mk,v 1.1 2020/11/03 16:41:26 bsiegert Exp $

BUILDLINK_TREE+=	maeparser

.if !defined(MAEPARSER_BUILDLINK3_MK)
MAEPARSER_BUILDLINK3_MK:=

BUILDLINK_API_DEPENDS.maeparser+=	maeparser>=1.2.4
BUILDLINK_PKGSRCDIR.maeparser?=	../../biology/maeparser

.include "../../devel/boost-libs/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.endif	# MAEPARSER_BUILDLINK3_MK

BUILDLINK_TREE+=	-maeparser
File Added: pkgsrc/biology/maeparser/distinfo
$NetBSD: distinfo,v 1.1 2020/11/03 16:41:26 bsiegert Exp $

SHA1 (maeparser-1.2.4.tar.gz) = 51654efcd3ca8b9c027ac58e735ec6c313bfe087
RMD160 (maeparser-1.2.4.tar.gz) = 595c8881aa1a368c8d6cfcd9af13076c58f9b403
SHA512 (maeparser-1.2.4.tar.gz) = b8862099c725007b81e7da574fa1c9f1ae00481a6427a1ae7b07dda6043b9c08008fc9e352858e6830fb8cecc1cf70edb5681299e8c91050e9f0ad1606e527e3
Size (maeparser-1.2.4.tar.gz) = 38285 bytes