Fri Jun 11 13:47:40 2021 UTC ()
biology/ncbi-blast+: Update to 2.11.0

Release notes: https://www.ncbi.nlm.nih.gov/books/NBK131777/


(bacon)
diff -r1.23 -r1.24 pkgsrc/biology/ncbi-blast+/Makefile
diff -r1.2 -r1.3 pkgsrc/biology/ncbi-blast+/PLIST
diff -r1.2 -r1.3 pkgsrc/biology/ncbi-blast+/buildlink3.mk
diff -r1.3 -r1.4 pkgsrc/biology/ncbi-blast+/distinfo
diff -r1.1 -r0 pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_cmake_cmake-cfg-unix.sh
diff -r1.1 -r0 pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_cmake_cmake-configure
diff -r0 -r1.1 pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_cmake_cmake-cfg-xcode.sh
diff -r1.1 -r1.2 pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_configure
cvs diff -r1.23 -r1.24 pkgsrc/biology/ncbi-blast+/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/ncbi-blast+/Makefile 2021/05/24 19:49:11 1.23
+++ pkgsrc/biology/ncbi-blast+/Makefile 2021/06/11 13:47:39 1.24
@@ -1,70 +1,72 @@ @@ -1,70 +1,72 @@
1# $NetBSD: Makefile,v 1.23 2021/05/24 19:49:11 wiz Exp $ 1# $NetBSD: Makefile,v 1.24 2021/06/11 13:47:39 bacon Exp $
2 2
3DISTNAME= ncbi-blast-2.8.1+-src 3DISTNAME= ncbi-blast-2.11.0+-src
4PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/} 4PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
5PKGREVISION= 15 
6CATEGORIES= biology 5CATEGORIES= biology
7MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ 6MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
8 https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/ 7 https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
9 8
10MAINTAINER= bacon@NetBSD.org 9MAINTAINER= bacon@NetBSD.org
11HOMEPAGE= http://blast.ncbi.nlm.nih.gov/ 10HOMEPAGE= http://blast.ncbi.nlm.nih.gov/
12COMMENT= NCBI implementation of Basic Local Alignment Search Tool 11COMMENT= NCBI implementation of Basic Local Alignment Search Tool
13LICENSE= public-domain 12LICENSE= public-domain
14 13
15# Fix "undefined _ThreadRuneLocale" error on FreeBSD 10.0 14# Fix "undefined _ThreadRuneLocale" error on FreeBSD 10.0
16# Fix "unknown options" in configure 15# Fix "unknown options" in configure
17SUBST_CLASSES+= configure 16SUBST_CLASSES+= configure
18SUBST_STAGE.configure= pre-configure 17SUBST_STAGE.configure= pre-configure
19SUBST_SED.configure+= -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' 18SUBST_SED.configure+= -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|'
20SUBST_SED.configure+= -e '/--infodir=DIR/d' 19SUBST_SED.configure+= -e '/--infodir=DIR/d'
21SUBST_SED.configure+= -e '/--mandir=DIR/d' 20SUBST_SED.configure+= -e '/--mandir=DIR/d'
22SUBST_FILES.configure+= ${WRKSRC}/src/build-system/configure 21SUBST_FILES.configure+= src/build-system/configure
23 22
24USE_TOOLS+= bash gmake perl 23USE_TOOLS+= bash gmake perl
25USE_LANGUAGES= c c++ 24USE_LANGUAGES= c c++
26GNU_CONFIGURE= yes 25GNU_CONFIGURE= yes
27GNU_CONFIGURE_STRICT= no # doesn't know --enable-option-checking 26GNU_CONFIGURE_STRICT= no # doesn't know --enable-option-checking
28REPLACE_BASH= scripts/common/impl/define_random_macros.sh 27REPLACE_BASH= scripts/common/impl/define_random_macros.sh
29REPLACE_BASH+= src/app/blast/get_species_taxids.sh 28REPLACE_BASH+= src/app/blast/get_species_taxids.sh
30REPLACE_PERL= src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl 29REPLACE_PERL= src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl
31REPLACE_PYTHON= src/app/winmasker/windowmasker_2.2.22_adapter.py 30REPLACE_PYTHON= src/app/winmasker/windowmasker_2.2.22_adapter.py
 31REPLACE_PYTHON+= src/app/blast/cleanup-blastdb-volumes.py
32 32
33# The test for amq can hang, but amq is not needed so just avoid the test 33# The test for amq can hang, but amq is not needed so just avoid the test
34# configure chooses /usr/local/bin/ar with no flags 34# configure chooses /usr/local/bin/ar with no flags
35# Resolve a conflict with libproj by moving libs to a subdir 35# Resolve a conflict with libproj by moving libs to a subdir
36CONFIGURE_ENV= ncbi_cv_prog_amq_w=no 36CONFIGURE_ENV= ncbi_cv_prog_amq_w=no
37CONFIGURE_ARGS+= AR="ar cr" --without-boost 37CONFIGURE_ARGS+= AR="ar cr" --without-boost
38CONFIGURE_ARGS+= --libdir=${PREFIX}/lib/ncbi-tools++ 38CONFIGURE_ARGS+= --libdir=${PREFIX}/lib/ncbi-tools++
39WRKSRC= ${WRKDIR}/${DISTNAME}/c++ 39WRKSRC= ${WRKDIR}/${DISTNAME}/c++
40 40
41.include "../../mk/bsd.prefs.mk" 41.include "../../mk/bsd.prefs.mk"
42 42
43.if ${OPSYS} == NetBSD 43.if ${OPSYS} == NetBSD
44# statfs is deprecated on NetBSD, but still exists in libc 44# statfs is deprecated on NetBSD, but still exists in libc
45# configure checks only for undefined reference, not for usability 45# configure checks only for undefined reference, not for usability
46CONFIGURE_ENV+= ac_cv_func_statfs=no 46CONFIGURE_ENV+= ac_cv_func_statfs=no
47.endif 47.endif
48 48
49# c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': 49# c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()':
50# c++/src/objtools/edit/seq_entry_edit.cpp:172:44: error: array subscript has type 'char' [-Werror=char-subscripts] 50# c++/src/objtools/edit/seq_entry_edit.cpp:172:44: error: array subscript has type 'char' [-Werror=char-subscripts]
51# while (descr_insert_order[index] != 0) 51# while (descr_insert_order[index] != 0)
52# Maybe fix this later. 52# Maybe fix this later.
53BUILDLINK_TRANSFORM+= rm:-Werror=char-subscripts 53BUILDLINK_TRANSFORM+= rm:-Werror=char-subscripts
54 54
55post-install: 55post-install:
56 ${RM} ${DESTDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra 56 ${RM} ${DESTDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
 57.if ${OPSYS} != Darwin
57 ${STRIP} ${DESTDIR}${PREFIX}/lib/ncbi-tools++/*.so 58 ${STRIP} ${DESTDIR}${PREFIX}/lib/ncbi-tools++/*.so
 59.endif
58 60
59.include "../../devel/zlib/buildlink3.mk" 61.include "../../devel/zlib/buildlink3.mk"
60.include "../../archivers/lzo/buildlink3.mk" 62.include "../../archivers/lzo/buildlink3.mk"
61.include "../../archivers/bzip2/buildlink3.mk" 63.include "../../archivers/bzip2/buildlink3.mk"
62.include "../../devel/pcre/buildlink3.mk" 64.include "../../devel/pcre/buildlink3.mk"
63.include "../../databases/lmdb/buildlink3.mk" 65.include "../../databases/lmdb/buildlink3.mk"
64.include "../../security/gnutls/buildlink3.mk" 66.include "../../security/gnutls/buildlink3.mk"
65.include "../../devel/gmp/buildlink3.mk" 67.include "../../devel/gmp/buildlink3.mk"
66.include "../../devel/libidn2/buildlink3.mk" 68.include "../../devel/libidn2/buildlink3.mk"
67.include "../../security/nettle/buildlink3.mk" 69.include "../../security/nettle/buildlink3.mk"
68.include "../../security/libtasn1/buildlink3.mk" 70.include "../../security/libtasn1/buildlink3.mk"
69.include "../../security/p11-kit/buildlink3.mk" 71.include "../../security/p11-kit/buildlink3.mk"
70.include "../../security/libgcrypt/buildlink3.mk" 72.include "../../security/libgcrypt/buildlink3.mk"
cvs diff -r1.2 -r1.3 pkgsrc/biology/ncbi-blast+/PLIST (expand / switch to unified diff)

--- pkgsrc/biology/ncbi-blast+/PLIST 2019/01/07 15:00:10 1.2
+++ pkgsrc/biology/ncbi-blast+/PLIST 2021/06/11 13:47:39 1.3
@@ -1,23 +1,26 @@ @@ -1,23 +1,26 @@
1@comment $NetBSD: PLIST,v 1.2 2019/01/07 15:00:10 bacon Exp $ 1@comment $NetBSD: PLIST,v 1.3 2021/06/11 13:47:39 bacon Exp $
2bin/blast_formatter 2bin/blast_formatter
 3bin/blast_report
3bin/blastdb_aliastool 4bin/blastdb_aliastool
4bin/blastdb_convert 5bin/blastdb_convert
 6bin/blastdb_path
5bin/blastdbcheck 7bin/blastdbcheck
6bin/blastdbcmd 8bin/blastdbcmd
7bin/blastdbcp 9bin/blastdbcp
8bin/blastn 10bin/blastn
9bin/blastp 11bin/blastp
10bin/blastx 12bin/blastx
 13bin/cleanup-blastdb-volumes.py
11bin/convert2blastmask 14bin/convert2blastmask
12bin/datatool 15bin/datatool
13bin/deltablast 16bin/deltablast
14bin/dustmasker 17bin/dustmasker
15bin/gc_cli 18bin/gc_cli
16bin/gene_info_reader 19bin/gene_info_reader
17bin/get_species_taxids.sh 20bin/get_species_taxids.sh
18bin/legacy_blast.pl 21bin/legacy_blast.pl
19bin/lmdbxx_sample 22bin/lmdbxx_sample
20bin/makeblastdb 23bin/makeblastdb
21bin/makembindex 24bin/makembindex
22bin/makeprofiledb 25bin/makeprofiledb
23bin/project_tree_builder 26bin/project_tree_builder
@@ -30,36 +33,38 @@ bin/segmasker @@ -30,36 +33,38 @@ bin/segmasker
30bin/seqdb_demo 33bin/seqdb_demo
31bin/seqdb_perf 34bin/seqdb_perf
32bin/tblastn 35bin/tblastn
33bin/tblastx 36bin/tblastx
34bin/update_blastdb.pl 37bin/update_blastdb.pl
35bin/windowmasker 38bin/windowmasker
36bin/windowmasker_2.2.22_adapter.py 39bin/windowmasker_2.2.22_adapter.py
37include/ncbi-tools++/algo/blast/api/bl2seq.hpp 40include/ncbi-tools++/algo/blast/api/bl2seq.hpp
38include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp 41include/ncbi-tools++/algo/blast/api/blast_advprot_options.hpp
39include/ncbi-tools++/algo/blast/api/blast_aux.hpp 42include/ncbi-tools++/algo/blast/api/blast_aux.hpp
40include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp 43include/ncbi-tools++/algo/blast/api/blast_dbindex.hpp
41include/ncbi-tools++/algo/blast/api/blast_exception.hpp 44include/ncbi-tools++/algo/blast/api/blast_exception.hpp
42include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp 45include/ncbi-tools++/algo/blast/api/blast_mtlock.hpp
 46include/ncbi-tools++/algo/blast/api/blast_node.hpp
43include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp 47include/ncbi-tools++/algo/blast/api/blast_nucl_options.hpp
44include/ncbi-tools++/algo/blast/api/blast_options.hpp 48include/ncbi-tools++/algo/blast/api/blast_options.hpp
45include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp 49include/ncbi-tools++/algo/blast/api/blast_options_builder.hpp
46include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp 50include/ncbi-tools++/algo/blast/api/blast_options_handle.hpp
47include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp 51include/ncbi-tools++/algo/blast/api/blast_prot_options.hpp
48include/ncbi-tools++/algo/blast/api/blast_results.hpp 52include/ncbi-tools++/algo/blast/api/blast_results.hpp
49include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp 53include/ncbi-tools++/algo/blast/api/blast_rps_options.hpp
50include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp 54include/ncbi-tools++/algo/blast/api/blast_seqinfosrc.hpp
51include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp 55include/ncbi-tools++/algo/blast/api/blast_seqinfosrc_aux.hpp
52include/ncbi-tools++/algo/blast/api/blast_types.hpp 56include/ncbi-tools++/algo/blast/api/blast_types.hpp
 57include/ncbi-tools++/algo/blast/api/blast_usage_report.hpp
53include/ncbi-tools++/algo/blast/api/blastp_kmer_options.hpp 58include/ncbi-tools++/algo/blast/api/blastp_kmer_options.hpp
54include/ncbi-tools++/algo/blast/api/blastx_options.hpp 59include/ncbi-tools++/algo/blast/api/blastx_options.hpp
55include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp 60include/ncbi-tools++/algo/blast/api/cdd_pssm_input.hpp
56include/ncbi-tools++/algo/blast/api/deltablast.hpp 61include/ncbi-tools++/algo/blast/api/deltablast.hpp
57include/ncbi-tools++/algo/blast/api/deltablast_options.hpp 62include/ncbi-tools++/algo/blast/api/deltablast_options.hpp
58include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp 63include/ncbi-tools++/algo/blast/api/disc_nucl_options.hpp
59include/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp 64include/ncbi-tools++/algo/blast/api/effsearchspace_calc.hpp
60include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp 65include/ncbi-tools++/algo/blast/api/hspstream_queue.hpp
61include/ncbi-tools++/algo/blast/api/local_blast.hpp 66include/ncbi-tools++/algo/blast/api/local_blast.hpp
62include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp 67include/ncbi-tools++/algo/blast/api/local_db_adapter.hpp
63include/ncbi-tools++/algo/blast/api/local_search.hpp 68include/ncbi-tools++/algo/blast/api/local_search.hpp
64include/ncbi-tools++/algo/blast/api/magicblast.hpp 69include/ncbi-tools++/algo/blast/api/magicblast.hpp
65include/ncbi-tools++/algo/blast/api/magicblast_options.hpp 70include/ncbi-tools++/algo/blast/api/magicblast_options.hpp
@@ -263,80 +268,86 @@ include/ncbi-tools++/common/boost_skew_g @@ -263,80 +268,86 @@ include/ncbi-tools++/common/boost_skew_g
263include/ncbi-tools++/common/config/ncbiconf_msvc.h 268include/ncbi-tools++/common/config/ncbiconf_msvc.h
264include/ncbi-tools++/common/config/ncbiconf_msvc_site.h.in 269include/ncbi-tools++/common/config/ncbiconf_msvc_site.h.in
265include/ncbi-tools++/common/config/ncbiconf_universal.h 270include/ncbi-tools++/common/config/ncbiconf_universal.h
266include/ncbi-tools++/common/config/ncbiconf_xcode.h 271include/ncbi-tools++/common/config/ncbiconf_xcode.h
267include/ncbi-tools++/common/header_template.hpp 272include/ncbi-tools++/common/header_template.hpp
268include/ncbi-tools++/common/metamodules_doxygen.h 273include/ncbi-tools++/common/metamodules_doxygen.h
269include/ncbi-tools++/common/ncbi_build_info.h 274include/ncbi-tools++/common/ncbi_build_info.h
270include/ncbi-tools++/common/ncbi_build_ver.h 275include/ncbi-tools++/common/ncbi_build_ver.h
271include/ncbi-tools++/common/ncbi_build_ver.h.in 276include/ncbi-tools++/common/ncbi_build_ver.h.in
272include/ncbi-tools++/common/ncbi_build_ver.h.last 277include/ncbi-tools++/common/ncbi_build_ver.h.last
273include/ncbi-tools++/common/ncbi_export.h 278include/ncbi-tools++/common/ncbi_export.h
274include/ncbi-tools++/common/ncbi_package_ver.h 279include/ncbi-tools++/common/ncbi_package_ver.h
275include/ncbi-tools++/common/ncbi_pch_impl.hpp 280include/ncbi-tools++/common/ncbi_pch_impl.hpp
 281include/ncbi-tools++/common/ncbi_revision.h
 282include/ncbi-tools++/common/ncbi_revision.h.in
276include/ncbi-tools++/common/ncbi_skew_guard.h 283include/ncbi-tools++/common/ncbi_skew_guard.h
277include/ncbi-tools++/common/ncbi_source_ver.cmake_nodep 284include/ncbi-tools++/common/ncbi_source_ver.cmake_nodep
278include/ncbi-tools++/common/ncbi_source_ver.h 285include/ncbi-tools++/common/ncbi_source_ver.h
279include/ncbi-tools++/common/ncbiconf_impl.h 286include/ncbi-tools++/common/ncbiconf_impl.h
280include/ncbi-tools++/common/test_assert.h 287include/ncbi-tools++/common/test_assert.h
281include/ncbi-tools++/common/test_assert_impl.h 288include/ncbi-tools++/common/test_assert_impl.h
282include/ncbi-tools++/common/test_data_path.h 289include/ncbi-tools++/common/test_data_path.h
283include/ncbi-tools++/connect/connect_export.h 290include/ncbi-tools++/connect/connect_export.h
284include/ncbi-tools++/connect/email_diag_handler.hpp 291include/ncbi-tools++/connect/email_diag_handler.hpp
285include/ncbi-tools++/connect/error_codes.hpp 292include/ncbi-tools++/connect/error_codes.hpp
286include/ncbi-tools++/connect/impl/server_connection.hpp 293include/ncbi-tools++/connect/impl/server_connection.hpp
287include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp 294include/ncbi-tools++/connect/impl/thread_pool_for_server.hpp
288include/ncbi-tools++/connect/ncbi_base64.h 295include/ncbi-tools++/connect/ncbi_base64.h
 296include/ncbi-tools++/connect/ncbi_blowfish.h
289include/ncbi-tools++/connect/ncbi_buffer.h 297include/ncbi-tools++/connect/ncbi_buffer.h
290include/ncbi-tools++/connect/ncbi_conn_exception.hpp 298include/ncbi-tools++/connect/ncbi_conn_exception.hpp
291include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp 299include/ncbi-tools++/connect/ncbi_conn_reader_writer.hpp
292include/ncbi-tools++/connect/ncbi_conn_stream.hpp 300include/ncbi-tools++/connect/ncbi_conn_stream.hpp
293include/ncbi-tools++/connect/ncbi_conn_test.hpp 301include/ncbi-tools++/connect/ncbi_conn_test.hpp
294include/ncbi-tools++/connect/ncbi_connection.h 302include/ncbi-tools++/connect/ncbi_connection.h
295include/ncbi-tools++/connect/ncbi_connector.h 303include/ncbi-tools++/connect/ncbi_connector.h
296include/ncbi-tools++/connect/ncbi_connutil.h 304include/ncbi-tools++/connect/ncbi_connutil.h
297include/ncbi-tools++/connect/ncbi_core.h 305include/ncbi-tools++/connect/ncbi_core.h
298include/ncbi-tools++/connect/ncbi_core_cxx.hpp 306include/ncbi-tools++/connect/ncbi_core_cxx.hpp
299include/ncbi-tools++/connect/ncbi_file_connector.h 307include/ncbi-tools++/connect/ncbi_file_connector.h
300include/ncbi-tools++/connect/ncbi_ftp_connector.h 308include/ncbi-tools++/connect/ncbi_ftp_connector.h
301include/ncbi-tools++/connect/ncbi_gnutls.h 309include/ncbi-tools++/connect/ncbi_gnutls.h
302include/ncbi-tools++/connect/ncbi_heapmgr.h 310include/ncbi-tools++/connect/ncbi_heapmgr.h
303include/ncbi-tools++/connect/ncbi_host_info.h 311include/ncbi-tools++/connect/ncbi_host_info.h
304include/ncbi-tools++/connect/ncbi_http_connector.h 312include/ncbi-tools++/connect/ncbi_http_connector.h
305include/ncbi-tools++/connect/ncbi_http_session.hpp 313include/ncbi-tools++/connect/ncbi_http_session.hpp
306include/ncbi-tools++/connect/ncbi_iprange.h 314include/ncbi-tools++/connect/ncbi_iprange.h
307include/ncbi-tools++/connect/ncbi_ipv6.h 315include/ncbi-tools++/connect/ncbi_ipv6.h
308include/ncbi-tools++/connect/ncbi_lbos.hpp 316include/ncbi-tools++/connect/ncbi_lbos.hpp
309include/ncbi-tools++/connect/ncbi_localip.h 317include/ncbi-tools++/connect/ncbi_localip.h
 318include/ncbi-tools++/connect/ncbi_localip.hpp
310include/ncbi-tools++/connect/ncbi_mbedtls.h 319include/ncbi-tools++/connect/ncbi_mbedtls.h
311include/ncbi-tools++/connect/ncbi_memory_connector.h 320include/ncbi-tools++/connect/ncbi_memory_connector.h
312include/ncbi-tools++/connect/ncbi_misc.hpp 321include/ncbi-tools++/connect/ncbi_misc.hpp
313include/ncbi-tools++/connect/ncbi_monkey.hpp 322include/ncbi-tools++/connect/ncbi_monkey.hpp
314include/ncbi-tools++/connect/ncbi_namedpipe.hpp 323include/ncbi-tools++/connect/ncbi_namedpipe.hpp
315include/ncbi-tools++/connect/ncbi_namedpipe_connector.hpp 324include/ncbi-tools++/connect/ncbi_namedpipe_connector.hpp
316include/ncbi-tools++/connect/ncbi_pipe.hpp 325include/ncbi-tools++/connect/ncbi_pipe.hpp
317include/ncbi-tools++/connect/ncbi_pipe_connector.hpp 326include/ncbi-tools++/connect/ncbi_pipe_connector.hpp
318include/ncbi-tools++/connect/ncbi_sendmail.h 327include/ncbi-tools++/connect/ncbi_sendmail.h
319include/ncbi-tools++/connect/ncbi_server_info.h 328include/ncbi-tools++/connect/ncbi_server_info.h
320include/ncbi-tools++/connect/ncbi_service.h 329include/ncbi-tools++/connect/ncbi_service.h
 330include/ncbi-tools++/connect/ncbi_service.hpp
321include/ncbi-tools++/connect/ncbi_service_connector.h 331include/ncbi-tools++/connect/ncbi_service_connector.h
322include/ncbi-tools++/connect/ncbi_service_cxx.hpp 332include/ncbi-tools++/connect/ncbi_service_cxx.hpp
323include/ncbi-tools++/connect/ncbi_socket.h 333include/ncbi-tools++/connect/ncbi_socket.h
324include/ncbi-tools++/connect/ncbi_socket.hpp 334include/ncbi-tools++/connect/ncbi_socket.hpp
325include/ncbi-tools++/connect/ncbi_socket_connector.h 335include/ncbi-tools++/connect/ncbi_socket_connector.h
326include/ncbi-tools++/connect/ncbi_socket_unix.h 336include/ncbi-tools++/connect/ncbi_socket_unix.h
327include/ncbi-tools++/connect/ncbi_socket_unix.hpp 337include/ncbi-tools++/connect/ncbi_socket_unix.hpp
328include/ncbi-tools++/connect/ncbi_tls.h 338include/ncbi-tools++/connect/ncbi_tls.h
329include/ncbi-tools++/connect/ncbi_types.h 339include/ncbi-tools++/connect/ncbi_types.h
 340include/ncbi-tools++/connect/ncbi_usage_report.hpp
330include/ncbi-tools++/connect/ncbi_userhost.hpp 341include/ncbi-tools++/connect/ncbi_userhost.hpp
331include/ncbi-tools++/connect/ncbi_util.h 342include/ncbi-tools++/connect/ncbi_util.h
332include/ncbi-tools++/connect/server.hpp 343include/ncbi-tools++/connect/server.hpp
333include/ncbi-tools++/connect/server_monitor.hpp 344include/ncbi-tools++/connect/server_monitor.hpp
334include/ncbi-tools++/connect/services/blob_storage_netcache.hpp 345include/ncbi-tools++/connect/services/blob_storage_netcache.hpp
335include/ncbi-tools++/connect/services/clparser.hpp 346include/ncbi-tools++/connect/services/clparser.hpp
336include/ncbi-tools++/connect/services/compound_id.hpp 347include/ncbi-tools++/connect/services/compound_id.hpp
337include/ncbi-tools++/connect/services/error_codes.hpp 348include/ncbi-tools++/connect/services/error_codes.hpp
338include/ncbi-tools++/connect/services/grid_app_version_info.hpp 349include/ncbi-tools++/connect/services/grid_app_version_info.hpp
339include/ncbi-tools++/connect/services/grid_client.hpp 350include/ncbi-tools++/connect/services/grid_client.hpp
340include/ncbi-tools++/connect/services/grid_client_app.hpp 351include/ncbi-tools++/connect/services/grid_client_app.hpp
341include/ncbi-tools++/connect/services/grid_globals.hpp 352include/ncbi-tools++/connect/services/grid_globals.hpp
342include/ncbi-tools++/connect/services/grid_rw_impl.hpp 353include/ncbi-tools++/connect/services/grid_rw_impl.hpp
@@ -417,26 +428,27 @@ include/ncbi-tools++/corelib/ncbi_os_msw @@ -417,26 +428,27 @@ include/ncbi-tools++/corelib/ncbi_os_msw
417include/ncbi-tools++/corelib/ncbi_os_unix.hpp 428include/ncbi-tools++/corelib/ncbi_os_unix.hpp
418include/ncbi-tools++/corelib/ncbi_param.hpp 429include/ncbi-tools++/corelib/ncbi_param.hpp
419include/ncbi-tools++/corelib/ncbi_process.hpp 430include/ncbi-tools++/corelib/ncbi_process.hpp
420include/ncbi-tools++/corelib/ncbi_safe_static.hpp 431include/ncbi-tools++/corelib/ncbi_safe_static.hpp
421include/ncbi-tools++/corelib/ncbi_signal.hpp 432include/ncbi-tools++/corelib/ncbi_signal.hpp
422include/ncbi-tools++/corelib/ncbi_stack.hpp 433include/ncbi-tools++/corelib/ncbi_stack.hpp
423include/ncbi-tools++/corelib/ncbi_strings.h 434include/ncbi-tools++/corelib/ncbi_strings.h
424include/ncbi-tools++/corelib/ncbi_system.hpp 435include/ncbi-tools++/corelib/ncbi_system.hpp
425include/ncbi-tools++/corelib/ncbi_toolkit.hpp 436include/ncbi-tools++/corelib/ncbi_toolkit.hpp
426include/ncbi-tools++/corelib/ncbi_tree.hpp 437include/ncbi-tools++/corelib/ncbi_tree.hpp
427include/ncbi-tools++/corelib/ncbi_url.hpp 438include/ncbi-tools++/corelib/ncbi_url.hpp
428include/ncbi-tools++/corelib/ncbi_xstr.hpp 439include/ncbi-tools++/corelib/ncbi_xstr.hpp
429include/ncbi-tools++/corelib/ncbiapp.hpp 440include/ncbi-tools++/corelib/ncbiapp.hpp
 441include/ncbi-tools++/corelib/ncbiapp_api.hpp
430include/ncbi-tools++/corelib/ncbiargs.hpp 442include/ncbi-tools++/corelib/ncbiargs.hpp
431include/ncbi-tools++/corelib/ncbiatomic.h 443include/ncbi-tools++/corelib/ncbiatomic.h
432include/ncbi-tools++/corelib/ncbiatomic.hpp 444include/ncbi-tools++/corelib/ncbiatomic.hpp
433include/ncbi-tools++/corelib/ncbicfg.h 445include/ncbi-tools++/corelib/ncbicfg.h
434include/ncbi-tools++/corelib/ncbicntr.hpp 446include/ncbi-tools++/corelib/ncbicntr.hpp
435include/ncbi-tools++/corelib/ncbictype.hpp 447include/ncbi-tools++/corelib/ncbictype.hpp
436include/ncbi-tools++/corelib/ncbidbg.hpp 448include/ncbi-tools++/corelib/ncbidbg.hpp
437include/ncbi-tools++/corelib/ncbidiag.hpp 449include/ncbi-tools++/corelib/ncbidiag.hpp
438include/ncbi-tools++/corelib/ncbidiag.inl 450include/ncbi-tools++/corelib/ncbidiag.inl
439include/ncbi-tools++/corelib/ncbidll.hpp 451include/ncbi-tools++/corelib/ncbidll.hpp
440include/ncbi-tools++/corelib/ncbienv.hpp 452include/ncbi-tools++/corelib/ncbienv.hpp
441include/ncbi-tools++/corelib/ncbierror.hpp 453include/ncbi-tools++/corelib/ncbierror.hpp
442include/ncbi-tools++/corelib/ncbiexec.hpp 454include/ncbi-tools++/corelib/ncbiexec.hpp
@@ -444,69 +456,72 @@ include/ncbi-tools++/corelib/ncbiexpt.hp @@ -444,69 +456,72 @@ include/ncbi-tools++/corelib/ncbiexpt.hp
444include/ncbi-tools++/corelib/ncbifile.hpp 456include/ncbi-tools++/corelib/ncbifile.hpp
445include/ncbi-tools++/corelib/ncbifloat.h 457include/ncbi-tools++/corelib/ncbifloat.h
446include/ncbi-tools++/corelib/ncbimempool.hpp 458include/ncbi-tools++/corelib/ncbimempool.hpp
447include/ncbi-tools++/corelib/ncbimisc.hpp 459include/ncbi-tools++/corelib/ncbimisc.hpp
448include/ncbi-tools++/corelib/ncbimtx.hpp 460include/ncbi-tools++/corelib/ncbimtx.hpp
449include/ncbi-tools++/corelib/ncbimtx.inl 461include/ncbi-tools++/corelib/ncbimtx.inl
450include/ncbi-tools++/corelib/ncbiobj.hpp 462include/ncbi-tools++/corelib/ncbiobj.hpp
451include/ncbi-tools++/corelib/ncbireg.hpp 463include/ncbi-tools++/corelib/ncbireg.hpp
452include/ncbi-tools++/corelib/ncbistd.hpp 464include/ncbi-tools++/corelib/ncbistd.hpp
453include/ncbi-tools++/corelib/ncbistl.hpp 465include/ncbi-tools++/corelib/ncbistl.hpp
454include/ncbi-tools++/corelib/ncbistr.hpp 466include/ncbi-tools++/corelib/ncbistr.hpp
455include/ncbi-tools++/corelib/ncbistr_util.hpp 467include/ncbi-tools++/corelib/ncbistr_util.hpp
456include/ncbi-tools++/corelib/ncbistre.hpp 468include/ncbi-tools++/corelib/ncbistre.hpp
 469include/ncbi-tools++/corelib/ncbisys.hpp
457include/ncbi-tools++/corelib/ncbithr.hpp 470include/ncbi-tools++/corelib/ncbithr.hpp
458include/ncbi-tools++/corelib/ncbithr_conf.hpp 471include/ncbi-tools++/corelib/ncbithr_conf.hpp
459include/ncbi-tools++/corelib/ncbitime.hpp 472include/ncbi-tools++/corelib/ncbitime.hpp
460include/ncbi-tools++/corelib/ncbitype.h 473include/ncbi-tools++/corelib/ncbitype.h
461include/ncbi-tools++/corelib/ncbiutil.hpp 474include/ncbi-tools++/corelib/ncbiutil.hpp
462include/ncbi-tools++/corelib/obj_pool.hpp 475include/ncbi-tools++/corelib/obj_pool.hpp
463include/ncbi-tools++/corelib/obj_store.hpp 476include/ncbi-tools++/corelib/obj_store.hpp
464include/ncbi-tools++/corelib/perf_log.hpp 477include/ncbi-tools++/corelib/perf_log.hpp
465include/ncbi-tools++/corelib/plugin_manager.hpp 478include/ncbi-tools++/corelib/plugin_manager.hpp
466include/ncbi-tools++/corelib/plugin_manager_impl.hpp 479include/ncbi-tools++/corelib/plugin_manager_impl.hpp
467include/ncbi-tools++/corelib/plugin_manager_store.hpp 480include/ncbi-tools++/corelib/plugin_manager_store.hpp
468include/ncbi-tools++/corelib/reader_writer.hpp 481include/ncbi-tools++/corelib/reader_writer.hpp
469include/ncbi-tools++/corelib/request_control.hpp 482include/ncbi-tools++/corelib/request_control.hpp
470include/ncbi-tools++/corelib/request_ctx.hpp 483include/ncbi-tools++/corelib/request_ctx.hpp
471include/ncbi-tools++/corelib/request_status.hpp 484include/ncbi-tools++/corelib/request_status.hpp
472include/ncbi-tools++/corelib/resource_info.hpp 485include/ncbi-tools++/corelib/resource_info.hpp
473include/ncbi-tools++/corelib/rwstream.hpp 486include/ncbi-tools++/corelib/rwstream.hpp
474include/ncbi-tools++/corelib/stream_utils.hpp 487include/ncbi-tools++/corelib/stream_utils.hpp
475include/ncbi-tools++/corelib/syslog.hpp 488include/ncbi-tools++/corelib/syslog.hpp
476include/ncbi-tools++/corelib/teamcity_messages.h 489include/ncbi-tools++/corelib/teamcity_messages.h
477include/ncbi-tools++/corelib/tempstr.hpp 490include/ncbi-tools++/corelib/tempstr.hpp
478include/ncbi-tools++/corelib/test_boost.hpp 491include/ncbi-tools++/corelib/test_boost.hpp
479include/ncbi-tools++/corelib/test_mt.hpp 492include/ncbi-tools++/corelib/test_mt.hpp
480include/ncbi-tools++/corelib/version.hpp 493include/ncbi-tools++/corelib/version.hpp
 494include/ncbi-tools++/corelib/version_api.hpp
481include/ncbi-tools++/db/error_codes.hpp 495include/ncbi-tools++/db/error_codes.hpp
482include/ncbi-tools++/db/sqlite/sqlitewrapp.hpp 496include/ncbi-tools++/db/sqlite/sqlitewrapp.hpp
483include/ncbi-tools++/dbapi/cache/dbapi_blob_cache.hpp 497include/ncbi-tools++/dbapi/cache/dbapi_blob_cache.hpp
484include/ncbi-tools++/dbapi/dbapi.hpp 498include/ncbi-tools++/dbapi/dbapi.hpp
485include/ncbi-tools++/dbapi/dbapi_variant_convert.hpp 499include/ncbi-tools++/dbapi/dbapi_variant_convert.hpp
486include/ncbi-tools++/dbapi/driver/dbapi_conn_factory.hpp 500include/ncbi-tools++/dbapi/driver/dbapi_conn_factory.hpp
487include/ncbi-tools++/dbapi/driver/dbapi_driver_conn_mgr.hpp 501include/ncbi-tools++/dbapi/driver/dbapi_driver_conn_mgr.hpp
488include/ncbi-tools++/dbapi/driver/dbapi_driver_conn_params.hpp 502include/ncbi-tools++/dbapi/driver/dbapi_driver_conn_params.hpp
489include/ncbi-tools++/dbapi/driver/dbapi_driver_convert.hpp 503include/ncbi-tools++/dbapi/driver/dbapi_driver_convert.hpp
490include/ncbi-tools++/dbapi/driver/dbapi_object_convert.hpp 504include/ncbi-tools++/dbapi/driver/dbapi_object_convert.hpp
491include/ncbi-tools++/dbapi/driver/dbapi_svc_mapper.hpp 505include/ncbi-tools++/dbapi/driver/dbapi_svc_mapper.hpp
492include/ncbi-tools++/dbapi/driver/driver_mgr.hpp 506include/ncbi-tools++/dbapi/driver/driver_mgr.hpp
493include/ncbi-tools++/dbapi/driver/drivers.hpp 507include/ncbi-tools++/dbapi/driver/drivers.hpp
494include/ncbi-tools++/dbapi/driver/exception.hpp 508include/ncbi-tools++/dbapi/driver/exception.hpp
495include/ncbi-tools++/dbapi/driver/impl/dbapi_driver_utils.hpp 509include/ncbi-tools++/dbapi/driver/impl/dbapi_driver_utils.hpp
496include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_cmd.hpp 510include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_cmd.hpp
497include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_connection.hpp 511include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_connection.hpp
498include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_context.hpp 512include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_context.hpp
499include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_result.hpp 513include/ncbi-tools++/dbapi/driver/impl/dbapi_impl_result.hpp
 514include/ncbi-tools++/dbapi/driver/impl/dbapi_pool_balancer.hpp
500include/ncbi-tools++/dbapi/driver/impl/handle_stack.hpp 515include/ncbi-tools++/dbapi/driver/impl/handle_stack.hpp
501include/ncbi-tools++/dbapi/driver/interfaces.hpp 516include/ncbi-tools++/dbapi/driver/interfaces.hpp
502include/ncbi-tools++/dbapi/driver/odbc/interfaces.hpp 517include/ncbi-tools++/dbapi/driver/odbc/interfaces.hpp
503include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/odbcinst.h 518include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/odbcinst.h
504include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sql.h 519include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sql.h
505include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlext.h 520include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlext.h
506include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlfront.h 521include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlfront.h
507include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlspi.h 522include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlspi.h
508include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqltypes.h 523include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqltypes.h
509include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlucode.h 524include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/sqlucode.h
510include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/unixodbc_conf.h 525include/ncbi-tools++/dbapi/driver/odbc/unix_odbc/unixodbc_conf.h
511include/ncbi-tools++/dbapi/driver/public.hpp 526include/ncbi-tools++/dbapi/driver/public.hpp
512include/ncbi-tools++/dbapi/driver/types.hpp 527include/ncbi-tools++/dbapi/driver/types.hpp
@@ -525,26 +540,96 @@ include/ncbi-tools++/html/factory.hpp @@ -525,26 +540,96 @@ include/ncbi-tools++/html/factory.hpp
525include/ncbi-tools++/html/html.hpp 540include/ncbi-tools++/html/html.hpp
526include/ncbi-tools++/html/html.inl 541include/ncbi-tools++/html/html.inl
527include/ncbi-tools++/html/html_exception.hpp 542include/ncbi-tools++/html/html_exception.hpp
528include/ncbi-tools++/html/htmlhelper.hpp 543include/ncbi-tools++/html/htmlhelper.hpp
529include/ncbi-tools++/html/indentstream.hpp 544include/ncbi-tools++/html/indentstream.hpp
530include/ncbi-tools++/html/node.hpp 545include/ncbi-tools++/html/node.hpp
531include/ncbi-tools++/html/node.inl 546include/ncbi-tools++/html/node.inl
532include/ncbi-tools++/html/nodemap.hpp 547include/ncbi-tools++/html/nodemap.hpp
533include/ncbi-tools++/html/page.hpp 548include/ncbi-tools++/html/page.hpp
534include/ncbi-tools++/html/pager.hpp 549include/ncbi-tools++/html/pager.hpp
535include/ncbi-tools++/html/selection.hpp 550include/ncbi-tools++/html/selection.hpp
536include/ncbi-tools++/html/writer_htmlenc.hpp 551include/ncbi-tools++/html/writer_htmlenc.hpp
537include/ncbi-tools++/misc/error_codes.hpp 552include/ncbi-tools++/misc/error_codes.hpp
 553include/ncbi-tools++/misc/jsonwrapp/jsonwrapp.hpp
 554include/ncbi-tools++/misc/jsonwrapp/jsonwrapp10.hpp
 555include/ncbi-tools++/misc/jsonwrapp/jsonwrapp11.hpp
 556include/ncbi-tools++/misc/jsonwrapp/rapidjson10/__NCBI_read_me.txt
 557include/ncbi-tools++/misc/jsonwrapp/rapidjson10/allocators.h
 558include/ncbi-tools++/misc/jsonwrapp/rapidjson10/document.h
 559include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodedstream.h
 560include/ncbi-tools++/misc/jsonwrapp/rapidjson10/encodings.h
 561include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/en.h
 562include/ncbi-tools++/misc/jsonwrapp/rapidjson10/error/error.h
 563include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filereadstream.h
 564include/ncbi-tools++/misc/jsonwrapp/rapidjson10/filewritestream.h
 565include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/biginteger.h
 566include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/diyfp.h
 567include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/dtoa.h
 568include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/ieee754.h
 569include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/itoa.h
 570include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/meta.h
 571include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/pow10.h
 572include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/stack.h
 573include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strfunc.h
 574include/ncbi-tools++/misc/jsonwrapp/rapidjson10/internal/strtod.h
 575include/ncbi-tools++/misc/jsonwrapp/rapidjson10/license.txt
 576include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorybuffer.h
 577include/ncbi-tools++/misc/jsonwrapp/rapidjson10/memorystream.h
 578include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/inttypes.h
 579include/ncbi-tools++/misc/jsonwrapp/rapidjson10/msinttypes/stdint.h
 580include/ncbi-tools++/misc/jsonwrapp/rapidjson10/pointer.h
 581include/ncbi-tools++/misc/jsonwrapp/rapidjson10/prettywriter.h
 582include/ncbi-tools++/misc/jsonwrapp/rapidjson10/rapidjson.h
 583include/ncbi-tools++/misc/jsonwrapp/rapidjson10/reader.h
 584include/ncbi-tools++/misc/jsonwrapp/rapidjson10/stringbuffer.h
 585include/ncbi-tools++/misc/jsonwrapp/rapidjson10/writer.h
 586include/ncbi-tools++/misc/jsonwrapp/rapidjson11/__NCBI_read_me.txt
 587include/ncbi-tools++/misc/jsonwrapp/rapidjson11/allocators.h
 588include/ncbi-tools++/misc/jsonwrapp/rapidjson11/document.h
 589include/ncbi-tools++/misc/jsonwrapp/rapidjson11/encodedstream.h
 590include/ncbi-tools++/misc/jsonwrapp/rapidjson11/encodings.h
 591include/ncbi-tools++/misc/jsonwrapp/rapidjson11/error/en.h
 592include/ncbi-tools++/misc/jsonwrapp/rapidjson11/error/error.h
 593include/ncbi-tools++/misc/jsonwrapp/rapidjson11/filereadstream.h
 594include/ncbi-tools++/misc/jsonwrapp/rapidjson11/filewritestream.h
 595include/ncbi-tools++/misc/jsonwrapp/rapidjson11/fwd.h
 596include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/biginteger.h
 597include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/diyfp.h
 598include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/dtoa.h
 599include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/ieee754.h
 600include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/itoa.h
 601include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/meta.h
 602include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/pow10.h
 603include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/regex.h
 604include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/stack.h
 605include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strfunc.h
 606include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/strtod.h
 607include/ncbi-tools++/misc/jsonwrapp/rapidjson11/internal/swap.h
 608include/ncbi-tools++/misc/jsonwrapp/rapidjson11/istreamwrapper.h
 609include/ncbi-tools++/misc/jsonwrapp/rapidjson11/license.txt
 610include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorybuffer.h
 611include/ncbi-tools++/misc/jsonwrapp/rapidjson11/memorystream.h
 612include/ncbi-tools++/misc/jsonwrapp/rapidjson11/msinttypes/inttypes.h
 613include/ncbi-tools++/misc/jsonwrapp/rapidjson11/msinttypes/stdint.h
 614include/ncbi-tools++/misc/jsonwrapp/rapidjson11/ostreamwrapper.h
 615include/ncbi-tools++/misc/jsonwrapp/rapidjson11/pointer.h
 616include/ncbi-tools++/misc/jsonwrapp/rapidjson11/prettywriter.h
 617include/ncbi-tools++/misc/jsonwrapp/rapidjson11/rapidjson.h
 618include/ncbi-tools++/misc/jsonwrapp/rapidjson11/reader.h
 619include/ncbi-tools++/misc/jsonwrapp/rapidjson11/schema.h
 620include/ncbi-tools++/misc/jsonwrapp/rapidjson11/stream.h
 621include/ncbi-tools++/misc/jsonwrapp/rapidjson11/stringbuffer.h
 622include/ncbi-tools++/misc/jsonwrapp/rapidjson11/writer.h
538include/ncbi-tools++/ncbi_pch.hpp 623include/ncbi-tools++/ncbi_pch.hpp
539include/ncbi-tools++/ncbi_random_macro.h 624include/ncbi-tools++/ncbi_random_macro.h
540include/ncbi-tools++/ncbi_source_ver.h 625include/ncbi-tools++/ncbi_source_ver.h
541include/ncbi-tools++/ncbiconf.h 626include/ncbi-tools++/ncbiconf.h
542include/ncbi-tools++/ncbiconf_unix.h 627include/ncbi-tools++/ncbiconf_unix.h
543include/ncbi-tools++/objects/access/.cvsignore 628include/ncbi-tools++/objects/access/.cvsignore
544include/ncbi-tools++/objects/access/.gitignore 629include/ncbi-tools++/objects/access/.gitignore
545include/ncbi-tools++/objects/access/Link_set.hpp 630include/ncbi-tools++/objects/access/Link_set.hpp
546include/ncbi-tools++/objects/access/Link_set_.hpp 631include/ncbi-tools++/objects/access/Link_set_.hpp
547include/ncbi-tools++/objects/access/NCBI_Access_module.hpp 632include/ncbi-tools++/objects/access/NCBI_Access_module.hpp
548include/ncbi-tools++/objects/access/access__.hpp 633include/ncbi-tools++/objects/access/access__.hpp
549include/ncbi-tools++/objects/biblio/.cvsignore 634include/ncbi-tools++/objects/biblio/.cvsignore
550include/ncbi-tools++/objects/biblio/.gitignore 635include/ncbi-tools++/objects/biblio/.gitignore
@@ -936,26 +1021,30 @@ include/ncbi-tools++/objects/cn3d/Cn3d_v @@ -936,26 +1021,30 @@ include/ncbi-tools++/objects/cn3d/Cn3d_v
936include/ncbi-tools++/objects/cn3d/Cn3d_vector_.hpp 1021include/ncbi-tools++/objects/cn3d/Cn3d_vector_.hpp
937include/ncbi-tools++/objects/cn3d/Cn3d_view_settings.hpp 1022include/ncbi-tools++/objects/cn3d/Cn3d_view_settings.hpp
938include/ncbi-tools++/objects/cn3d/Cn3d_view_settings_.hpp 1023include/ncbi-tools++/objects/cn3d/Cn3d_view_settings_.hpp
939include/ncbi-tools++/objects/cn3d/NCBI_Cn3d_module.hpp 1024include/ncbi-tools++/objects/cn3d/NCBI_Cn3d_module.hpp
940include/ncbi-tools++/objects/cn3d/cn3d__.hpp 1025include/ncbi-tools++/objects/cn3d/cn3d__.hpp
941include/ncbi-tools++/objects/coords/.cvsignore 1026include/ncbi-tools++/objects/coords/.cvsignore
942include/ncbi-tools++/objects/coords/.gitignore 1027include/ncbi-tools++/objects/coords/.gitignore
943include/ncbi-tools++/objects/coords/HGVS_Coordinate.hpp 1028include/ncbi-tools++/objects/coords/HGVS_Coordinate.hpp
944include/ncbi-tools++/objects/coords/HGVS_Coordinate_.hpp 1029include/ncbi-tools++/objects/coords/HGVS_Coordinate_.hpp
945include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set.hpp 1030include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set.hpp
946include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set_.hpp 1031include/ncbi-tools++/objects/coords/HGVS_Coordinate_Set_.hpp
947include/ncbi-tools++/objects/coords/NCBI_HGVSCoordinate_module.hpp 1032include/ncbi-tools++/objects/coords/NCBI_HGVSCoordinate_module.hpp
948include/ncbi-tools++/objects/coords/objcoords__.hpp 1033include/ncbi-tools++/objects/coords/objcoords__.hpp
 1034include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp.grpc.pb.h
 1035include/ncbi-tools++/objects/dbsnp/primary_track/dbsnp.pb.h
 1036include/ncbi-tools++/objects/dbsnp/primary_track/impl/snpptis_impl.hpp
 1037include/ncbi-tools++/objects/dbsnp/primary_track/snpptis.hpp
949include/ncbi-tools++/objects/docsum/.cvsignore 1038include/ncbi-tools++/objects/docsum/.cvsignore
950include/ncbi-tools++/objects/docsum/.gitignore 1039include/ncbi-tools++/objects/docsum/.gitignore
951include/ncbi-tools++/objects/docsum/Assay.hpp 1040include/ncbi-tools++/objects/docsum/Assay.hpp
952include/ncbi-tools++/objects/docsum/Assay_.hpp 1041include/ncbi-tools++/objects/docsum/Assay_.hpp
953include/ncbi-tools++/objects/docsum/Assembly.hpp 1042include/ncbi-tools++/objects/docsum/Assembly.hpp
954include/ncbi-tools++/objects/docsum/Assembly_.hpp 1043include/ncbi-tools++/objects/docsum/Assembly_.hpp
955include/ncbi-tools++/objects/docsum/BaseURL.hpp 1044include/ncbi-tools++/objects/docsum/BaseURL.hpp
956include/ncbi-tools++/objects/docsum/BaseURL_.hpp 1045include/ncbi-tools++/objects/docsum/BaseURL_.hpp
957include/ncbi-tools++/objects/docsum/Component.hpp 1046include/ncbi-tools++/objects/docsum/Component.hpp
958include/ncbi-tools++/objects/docsum/Component_.hpp 1047include/ncbi-tools++/objects/docsum/Component_.hpp
959include/ncbi-tools++/objects/docsum/Docsum_3_4_module.hpp 1048include/ncbi-tools++/objects/docsum/Docsum_3_4_module.hpp
960include/ncbi-tools++/objects/docsum/ExchangeSet.hpp 1049include/ncbi-tools++/objects/docsum/ExchangeSet.hpp
961include/ncbi-tools++/objects/docsum/ExchangeSet_.hpp 1050include/ncbi-tools++/objects/docsum/ExchangeSet_.hpp
@@ -1209,26 +1298,28 @@ include/ncbi-tools++/objects/genomecoll/ @@ -1209,26 +1298,28 @@ include/ncbi-tools++/objects/genomecoll/
1209include/ncbi-tools++/objects/genomecoll/GCClient_AssemblyInfo_.hpp 1298include/ncbi-tools++/objects/genomecoll/GCClient_AssemblyInfo_.hpp
1210include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI.hpp 1299include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI.hpp
1211include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI_.hpp 1300include/ncbi-tools++/objects/genomecoll/GCClient_AssemblySequenceI_.hpp
1212include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl.hpp 1301include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl.hpp
1213include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl_.hpp 1302include/ncbi-tools++/objects/genomecoll/GCClient_EquivalentAssembl_.hpp
1214include/ncbi-tools++/objects/genomecoll/GCClient_Error.hpp 1303include/ncbi-tools++/objects/genomecoll/GCClient_Error.hpp
1215include/ncbi-tools++/objects/genomecoll/GCClient_Error_.hpp 1304include/ncbi-tools++/objects/genomecoll/GCClient_Error_.hpp
1216include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe.hpp 1305include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe.hpp
1217include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe_.hpp 1306include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBlobRe_.hpp
1218include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ.hpp 1307include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ.hpp
1219include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ_.hpp 1308include/ncbi-tools++/objects/genomecoll/GCClient_GetAssemblyBySequ_.hpp
1220include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse.hpp 1309include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse.hpp
1221include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse_.hpp 1310include/ncbi-tools++/objects/genomecoll/GCClient_GetEquivalentAsse_.hpp
 1311include/ncbi-tools++/objects/genomecoll/GCClient_SequenceInfo.hpp
 1312include/ncbi-tools++/objects/genomecoll/GCClient_SequenceInfo_.hpp
1222include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo.hpp 1313include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo.hpp
1223include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo_.hpp 1314include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLo_.hpp
1224include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLx.hpp 1315include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLx.hpp
1225include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLx_.hpp 1316include/ncbi-tools++/objects/genomecoll/GCClient_ValidateChrTypeLx_.hpp
1226include/ncbi-tools++/objects/genomecoll/GC_Assemblies.hpp 1317include/ncbi-tools++/objects/genomecoll/GC_Assemblies.hpp
1227include/ncbi-tools++/objects/genomecoll/GC_Assemblies_.hpp 1318include/ncbi-tools++/objects/genomecoll/GC_Assemblies_.hpp
1228include/ncbi-tools++/objects/genomecoll/GC_Assembly.hpp 1319include/ncbi-tools++/objects/genomecoll/GC_Assembly.hpp
1229include/ncbi-tools++/objects/genomecoll/GC_AssemblyDesc.hpp 1320include/ncbi-tools++/objects/genomecoll/GC_AssemblyDesc.hpp
1230include/ncbi-tools++/objects/genomecoll/GC_AssemblyDesc_.hpp 1321include/ncbi-tools++/objects/genomecoll/GC_AssemblyDesc_.hpp
1231include/ncbi-tools++/objects/genomecoll/GC_AssemblySet.hpp 1322include/ncbi-tools++/objects/genomecoll/GC_AssemblySet.hpp
1232include/ncbi-tools++/objects/genomecoll/GC_AssemblySet_.hpp 1323include/ncbi-tools++/objects/genomecoll/GC_AssemblySet_.hpp
1233include/ncbi-tools++/objects/genomecoll/GC_AssemblyUnit.hpp 1324include/ncbi-tools++/objects/genomecoll/GC_AssemblyUnit.hpp
1234include/ncbi-tools++/objects/genomecoll/GC_AssemblyUnit_.hpp 1325include/ncbi-tools++/objects/genomecoll/GC_AssemblyUnit_.hpp
@@ -3388,26 +3479,27 @@ include/ncbi-tools++/objtools/align_form @@ -3388,26 +3479,27 @@ include/ncbi-tools++/objtools/align_form
3388include/ncbi-tools++/objtools/align_format/ilinkoutdb.hpp 3479include/ncbi-tools++/objtools/align_format/ilinkoutdb.hpp
3389include/ncbi-tools++/objtools/align_format/seqalignfilter.hpp 3480include/ncbi-tools++/objtools/align_format/seqalignfilter.hpp
3390include/ncbi-tools++/objtools/align_format/showalign.hpp 3481include/ncbi-tools++/objtools/align_format/showalign.hpp
3391include/ncbi-tools++/objtools/align_format/showdefline.hpp 3482include/ncbi-tools++/objtools/align_format/showdefline.hpp
3392include/ncbi-tools++/objtools/align_format/tabular.hpp 3483include/ncbi-tools++/objtools/align_format/tabular.hpp
3393include/ncbi-tools++/objtools/align_format/taxFormat.hpp 3484include/ncbi-tools++/objtools/align_format/taxFormat.hpp
3394include/ncbi-tools++/objtools/align_format/vectorscreen.hpp 3485include/ncbi-tools++/objtools/align_format/vectorscreen.hpp
3395include/ncbi-tools++/objtools/alnmgr/aln_asn_reader.hpp 3486include/ncbi-tools++/objtools/alnmgr/aln_asn_reader.hpp
3396include/ncbi-tools++/objtools/alnmgr/aln_builders.hpp 3487include/ncbi-tools++/objtools/alnmgr/aln_builders.hpp
3397include/ncbi-tools++/objtools/alnmgr/aln_container.hpp 3488include/ncbi-tools++/objtools/alnmgr/aln_container.hpp
3398include/ncbi-tools++/objtools/alnmgr/aln_converters.hpp 3489include/ncbi-tools++/objtools/alnmgr/aln_converters.hpp
3399include/ncbi-tools++/objtools/alnmgr/aln_explorer.hpp 3490include/ncbi-tools++/objtools/alnmgr/aln_explorer.hpp
3400include/ncbi-tools++/objtools/alnmgr/aln_generators.hpp 3491include/ncbi-tools++/objtools/alnmgr/aln_generators.hpp
 3492include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_list_oper.hpp
3401include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_oper.hpp 3493include/ncbi-tools++/objtools/alnmgr/aln_rng_coll_oper.hpp
3402include/ncbi-tools++/objtools/alnmgr/aln_seqid.hpp 3494include/ncbi-tools++/objtools/alnmgr/aln_seqid.hpp
3403include/ncbi-tools++/objtools/alnmgr/aln_serial.hpp 3495include/ncbi-tools++/objtools/alnmgr/aln_serial.hpp
3404include/ncbi-tools++/objtools/alnmgr/aln_stats.hpp 3496include/ncbi-tools++/objtools/alnmgr/aln_stats.hpp
3405include/ncbi-tools++/objtools/alnmgr/aln_tests.hpp 3497include/ncbi-tools++/objtools/alnmgr/aln_tests.hpp
3406include/ncbi-tools++/objtools/alnmgr/aln_user_options.hpp 3498include/ncbi-tools++/objtools/alnmgr/aln_user_options.hpp
3407include/ncbi-tools++/objtools/alnmgr/alndiag.hpp 3499include/ncbi-tools++/objtools/alnmgr/alndiag.hpp
3408include/ncbi-tools++/objtools/alnmgr/alnexception.hpp 3500include/ncbi-tools++/objtools/alnmgr/alnexception.hpp
3409include/ncbi-tools++/objtools/alnmgr/alnmap.hpp 3501include/ncbi-tools++/objtools/alnmgr/alnmap.hpp
3410include/ncbi-tools++/objtools/alnmgr/alnmatch.hpp 3502include/ncbi-tools++/objtools/alnmgr/alnmatch.hpp
3411include/ncbi-tools++/objtools/alnmgr/alnmerger.hpp 3503include/ncbi-tools++/objtools/alnmgr/alnmerger.hpp
3412include/ncbi-tools++/objtools/alnmgr/alnmix.hpp 3504include/ncbi-tools++/objtools/alnmgr/alnmix.hpp
3413include/ncbi-tools++/objtools/alnmgr/alnpos_ci.hpp 3505include/ncbi-tools++/objtools/alnmgr/alnpos_ci.hpp
@@ -3454,103 +3546,108 @@ include/ncbi-tools++/objtools/blast/seqd @@ -3454,103 +3546,108 @@ include/ncbi-tools++/objtools/blast/seqd
3454include/ncbi-tools++/objtools/blast/seqdb_writer/taxid_set.hpp 3546include/ncbi-tools++/objtools/blast/seqdb_writer/taxid_set.hpp
3455include/ncbi-tools++/objtools/blast/seqdb_writer/writedb.hpp 3547include/ncbi-tools++/objtools/blast/seqdb_writer/writedb.hpp
3456include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_convert.hpp 3548include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_convert.hpp
3457include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_error.hpp 3549include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_error.hpp
3458include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_files.hpp 3550include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_files.hpp
3459include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp 3551include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_general.hpp
3460include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp 3552include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_isam.hpp
3461include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_lmdb.hpp 3553include/ncbi-tools++/objtools/blast/seqdb_writer/writedb_lmdb.hpp
3462include/ncbi-tools++/objtools/blast/services/blast_services.hpp 3554include/ncbi-tools++/objtools/blast/services/blast_services.hpp
3463include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp 3555include/ncbi-tools++/objtools/cleanup/autogenerated_cleanup.hpp
3464include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp 3556include/ncbi-tools++/objtools/cleanup/capitalization_string.hpp
3465include/ncbi-tools++/objtools/cleanup/cleanup.hpp 3557include/ncbi-tools++/objtools/cleanup/cleanup.hpp
3466include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp 3558include/ncbi-tools++/objtools/cleanup/cleanup_change.hpp
3467include/ncbi-tools++/objtools/cleanup/newcleanup.hpp 3559include/ncbi-tools++/objtools/cleanup/cleanup_message.hpp
 3560include/ncbi-tools++/objtools/cleanup/cleanup_pub.hpp
 3561include/ncbi-tools++/objtools/cleanup/fix_feature_id.hpp
3468include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp 3562include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader.hpp
3469include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp 3563include/ncbi-tools++/objtools/data_loaders/blastdb/bdbloader_rmt.hpp
3470include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp 3564include/ncbi-tools++/objtools/data_loaders/blastdb/blastdb_adapter.hpp
3471include/ncbi-tools++/objtools/data_loaders/genbank/blob_id.hpp 3565include/ncbi-tools++/objtools/data_loaders/genbank/blob_id.hpp
3472include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache.hpp 3566include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache.hpp
3473include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp 3567include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_entry.hpp
3474include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_params.h 3568include/ncbi-tools++/objtools/data_loaders/genbank/cache/reader_cache_params.h
3475include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache.hpp 3569include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache.hpp
3476include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp 3570include/ncbi-tools++/objtools/data_loaders/genbank/cache/writer_cache_entry.hpp
3477include/ncbi-tools++/objtools/data_loaders/genbank/gbloader.hpp 3571include/ncbi-tools++/objtools/data_loaders/genbank/gbloader.hpp
3478include/ncbi-tools++/objtools/data_loaders/genbank/gbloader_params.h 3572include/ncbi-tools++/objtools/data_loaders/genbank/gbloader_params.h
 3573include/ncbi-tools++/objtools/data_loaders/genbank/gbnative.hpp
3479include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache.hpp 3574include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache.hpp
3480include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp 3575include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_entry.hpp
3481include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_params.h 3576include/ncbi-tools++/objtools/data_loaders/genbank/gicache/reader_gicache_params.h
3482include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1.hpp 3577include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1.hpp
3483include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp 3578include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_entry.hpp
3484include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_params.h 3579include/ncbi-tools++/objtools/data_loaders/genbank/id1/reader_id1_params.h
3485include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2.hpp 3580include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2.hpp
3486include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp 3581include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_entry.hpp
3487include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_params.h 3582include/ncbi-tools++/objtools/data_loaders/genbank/id2/reader_id2_params.h
3488include/ncbi-tools++/objtools/data_loaders/genbank/impl/cache_manager.hpp 3583include/ncbi-tools++/objtools/data_loaders/genbank/impl/cache_manager.hpp
3489include/ncbi-tools++/objtools/data_loaders/genbank/impl/dispatcher.hpp 3584include/ncbi-tools++/objtools/data_loaders/genbank/impl/dispatcher.hpp
3490include/ncbi-tools++/objtools/data_loaders/genbank/impl/gbload_util.hpp 3585include/ncbi-tools++/objtools/data_loaders/genbank/impl/gbload_util.hpp
3491include/ncbi-tools++/objtools/data_loaders/genbank/impl/incr_time.hpp 3586include/ncbi-tools++/objtools/data_loaders/genbank/impl/incr_time.hpp
3492include/ncbi-tools++/objtools/data_loaders/genbank/impl/info_cache.hpp 3587include/ncbi-tools++/objtools/data_loaders/genbank/impl/info_cache.hpp
3493include/ncbi-tools++/objtools/data_loaders/genbank/impl/processor.hpp 3588include/ncbi-tools++/objtools/data_loaders/genbank/impl/processor.hpp
3494include/ncbi-tools++/objtools/data_loaders/genbank/impl/processors.hpp 3589include/ncbi-tools++/objtools/data_loaders/genbank/impl/processors.hpp
 3590include/ncbi-tools++/objtools/data_loaders/genbank/impl/psg_loader_impl.hpp
3495include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id1_base.hpp 3591include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id1_base.hpp
3496include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id2_base.hpp 3592include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_id2_base.hpp
3497include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_service.hpp 3593include/ncbi-tools++/objtools/data_loaders/genbank/impl/reader_service.hpp
3498include/ncbi-tools++/objtools/data_loaders/genbank/impl/request_result.hpp 3594include/ncbi-tools++/objtools/data_loaders/genbank/impl/request_result.hpp
3499include/ncbi-tools++/objtools/data_loaders/genbank/impl/standalone_result.hpp 3595include/ncbi-tools++/objtools/data_loaders/genbank/impl/standalone_result.hpp
3500include/ncbi-tools++/objtools/data_loaders/genbank/impl/statistics.hpp 3596include/ncbi-tools++/objtools/data_loaders/genbank/impl/statistics.hpp
 3597include/ncbi-tools++/objtools/data_loaders/genbank/psg_loader.hpp
3501include/ncbi-tools++/objtools/data_loaders/genbank/reader.hpp 3598include/ncbi-tools++/objtools/data_loaders/genbank/reader.hpp
3502include/ncbi-tools++/objtools/data_loaders/genbank/reader_interface.hpp 3599include/ncbi-tools++/objtools/data_loaders/genbank/reader_interface.hpp
3503include/ncbi-tools++/objtools/data_loaders/genbank/reader_params.h 3600include/ncbi-tools++/objtools/data_loaders/genbank/reader_params.h
3504include/ncbi-tools++/objtools/data_loaders/genbank/reader_service_params.h 3601include/ncbi-tools++/objtools/data_loaders/genbank/reader_service_params.h
3505include/ncbi-tools++/objtools/data_loaders/genbank/reader_snp.hpp 3602include/ncbi-tools++/objtools/data_loaders/genbank/reader_snp.hpp
3506include/ncbi-tools++/objtools/data_loaders/genbank/readers.hpp 3603include/ncbi-tools++/objtools/data_loaders/genbank/readers.hpp
3507include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp 3604include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/reader_cache.hpp
3508include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp 3605include/ncbi-tools++/objtools/data_loaders/genbank/readers/cache/writer_cache.hpp
3509include/ncbi-tools++/objtools/data_loaders/genbank/readers/id1/reader_id1.hpp 3606include/ncbi-tools++/objtools/data_loaders/genbank/readers/id1/reader_id1.hpp
3510include/ncbi-tools++/objtools/data_loaders/genbank/readers/id2/reader_id2.hpp 3607include/ncbi-tools++/objtools/data_loaders/genbank/readers/id2/reader_id2.hpp
3511include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos/reader_pubseq.hpp 3608include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos/reader_pubseq.hpp
3512include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp 3609include/ncbi-tools++/objtools/data_loaders/genbank/readers/pubseqos2/reader_pubseq2.hpp
3513include/ncbi-tools++/objtools/data_loaders/genbank/seqref.hpp 3610include/ncbi-tools++/objtools/data_loaders/genbank/seqref.hpp
3514include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp 3611include/ncbi-tools++/objtools/data_loaders/genbank/writer.hpp
3515include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp 3612include/ncbi-tools++/objtools/data_loaders/genbank/writer_interface.hpp
3516include/ncbi-tools++/objtools/data_loaders/loaders.hpp 3613include/ncbi-tools++/objtools/data_loaders/loaders.hpp
3517include/ncbi-tools++/objtools/edit/apply_mods.hpp 
3518include/ncbi-tools++/objtools/edit/apply_object.hpp 3614include/ncbi-tools++/objtools/edit/apply_object.hpp
3519include/ncbi-tools++/objtools/edit/autodef.hpp 3615include/ncbi-tools++/objtools/edit/autodef.hpp
3520include/ncbi-tools++/objtools/edit/autodef_options.hpp 3616include/ncbi-tools++/objtools/edit/autodef_options.hpp
3521include/ncbi-tools++/objtools/edit/autodef_source_desc.hpp 3617include/ncbi-tools++/objtools/edit/autodef_source_desc.hpp
3522include/ncbi-tools++/objtools/edit/autodef_with_tax.hpp 3618include/ncbi-tools++/objtools/edit/autodef_with_tax.hpp
3523include/ncbi-tools++/objtools/edit/capitalization_string.hpp 3619include/ncbi-tools++/objtools/edit/capitalization_string.hpp
3524include/ncbi-tools++/objtools/edit/cds_fix.hpp 3620include/ncbi-tools++/objtools/edit/cds_fix.hpp
3525include/ncbi-tools++/objtools/edit/dblink_field.hpp 3621include/ncbi-tools++/objtools/edit/dblink_field.hpp
3526include/ncbi-tools++/objtools/edit/edit_error.hpp 3622include/ncbi-tools++/objtools/edit/edit_error.hpp
3527include/ncbi-tools++/objtools/edit/edit_exception.hpp 3623include/ncbi-tools++/objtools/edit/edit_exception.hpp
3528include/ncbi-tools++/objtools/edit/external_annots.hpp 3624include/ncbi-tools++/objtools/edit/external_annots.hpp
3529include/ncbi-tools++/objtools/edit/feattable_edit.hpp 3625include/ncbi-tools++/objtools/edit/feattable_edit.hpp
3530include/ncbi-tools++/objtools/edit/feature_propagate.hpp 3626include/ncbi-tools++/objtools/edit/feature_propagate.hpp
3531include/ncbi-tools++/objtools/edit/field_handler.hpp 3627include/ncbi-tools++/objtools/edit/field_handler.hpp
3532include/ncbi-tools++/objtools/edit/gap_trim.hpp 3628include/ncbi-tools++/objtools/edit/gap_trim.hpp
3533include/ncbi-tools++/objtools/edit/gaps_edit.hpp 3629include/ncbi-tools++/objtools/edit/gaps_edit.hpp
3534include/ncbi-tools++/objtools/edit/gb_block_field.hpp 3630include/ncbi-tools++/objtools/edit/gb_block_field.hpp
3535include/ncbi-tools++/objtools/edit/gene_utils.hpp 3631include/ncbi-tools++/objtools/edit/gene_utils.hpp
3536include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp 3632include/ncbi-tools++/objtools/edit/link_cds_mrna.hpp
3537include/ncbi-tools++/objtools/edit/loc_edit.hpp 3633include/ncbi-tools++/objtools/edit/loc_edit.hpp
3538include/ncbi-tools++/objtools/edit/mail_report.hpp 3634include/ncbi-tools++/objtools/edit/mail_report.hpp
3539include/ncbi-tools++/objtools/edit/parse_text_options.hpp 3635include/ncbi-tools++/objtools/edit/parse_text_options.hpp
3540include/ncbi-tools++/objtools/edit/promote.hpp 3636include/ncbi-tools++/objtools/edit/promote.hpp
3541include/ncbi-tools++/objtools/edit/publication_edit.hpp 3637include/ncbi-tools++/objtools/edit/publication_edit.hpp
3542include/ncbi-tools++/objtools/edit/remote_updater.hpp 3638include/ncbi-tools++/objtools/edit/remote_updater.hpp
3543include/ncbi-tools++/objtools/edit/rna_edit.hpp 3639include/ncbi-tools++/objtools/edit/rna_edit.hpp
 3640include/ncbi-tools++/objtools/edit/seq_edit.hpp
3544include/ncbi-tools++/objtools/edit/seq_entry_edit.hpp 3641include/ncbi-tools++/objtools/edit/seq_entry_edit.hpp
3545include/ncbi-tools++/objtools/edit/seqid_guesser.hpp 3642include/ncbi-tools++/objtools/edit/seqid_guesser.hpp
3546include/ncbi-tools++/objtools/edit/source_edit.hpp 3643include/ncbi-tools++/objtools/edit/source_edit.hpp
3547include/ncbi-tools++/objtools/edit/string_constraint.hpp 3644include/ncbi-tools++/objtools/edit/string_constraint.hpp
3548include/ncbi-tools++/objtools/edit/struc_comm_field.hpp 3645include/ncbi-tools++/objtools/edit/struc_comm_field.hpp
3549include/ncbi-tools++/objtools/edit/text_desc_field.hpp 3646include/ncbi-tools++/objtools/edit/text_desc_field.hpp
3550include/ncbi-tools++/objtools/edit/text_object_description.hpp 3647include/ncbi-tools++/objtools/edit/text_object_description.hpp
3551include/ncbi-tools++/objtools/error_codes.hpp 3648include/ncbi-tools++/objtools/error_codes.hpp
3552include/ncbi-tools++/objtools/format/cigar_formatter.hpp 3649include/ncbi-tools++/objtools/format/cigar_formatter.hpp
3553include/ncbi-tools++/objtools/format/context.hpp 3650include/ncbi-tools++/objtools/format/context.hpp
3554include/ncbi-tools++/objtools/format/embl_formatter.hpp 3651include/ncbi-tools++/objtools/format/embl_formatter.hpp
3555include/ncbi-tools++/objtools/format/embl_gather.hpp 3652include/ncbi-tools++/objtools/format/embl_gather.hpp
3556include/ncbi-tools++/objtools/format/feature_gather.hpp 3653include/ncbi-tools++/objtools/format/feature_gather.hpp
@@ -3594,84 +3691,99 @@ include/ncbi-tools++/objtools/format/ite @@ -3594,84 +3691,99 @@ include/ncbi-tools++/objtools/format/ite
3594include/ncbi-tools++/objtools/format/items/qualifiers.hpp 3691include/ncbi-tools++/objtools/format/items/qualifiers.hpp
3595include/ncbi-tools++/objtools/format/items/reference_item.hpp 3692include/ncbi-tools++/objtools/format/items/reference_item.hpp
3596include/ncbi-tools++/objtools/format/items/segment_item.hpp 3693include/ncbi-tools++/objtools/format/items/segment_item.hpp
3597include/ncbi-tools++/objtools/format/items/sequence_item.hpp 3694include/ncbi-tools++/objtools/format/items/sequence_item.hpp
3598include/ncbi-tools++/objtools/format/items/source_item.hpp 3695include/ncbi-tools++/objtools/format/items/source_item.hpp
3599include/ncbi-tools++/objtools/format/items/tsa_item.hpp 3696include/ncbi-tools++/objtools/format/items/tsa_item.hpp
3600include/ncbi-tools++/objtools/format/items/version_item.hpp 3697include/ncbi-tools++/objtools/format/items/version_item.hpp
3601include/ncbi-tools++/objtools/format/items/wgs_item.hpp 3698include/ncbi-tools++/objtools/format/items/wgs_item.hpp
3602include/ncbi-tools++/objtools/format/ostream_text_ostream.hpp 3699include/ncbi-tools++/objtools/format/ostream_text_ostream.hpp
3603include/ncbi-tools++/objtools/format/sam_formatter.hpp 3700include/ncbi-tools++/objtools/format/sam_formatter.hpp
3604include/ncbi-tools++/objtools/format/text_ostream.hpp 3701include/ncbi-tools++/objtools/format/text_ostream.hpp
3605include/ncbi-tools++/objtools/logging/listener.hpp 3702include/ncbi-tools++/objtools/logging/listener.hpp
3606include/ncbi-tools++/objtools/logging/message.hpp 3703include/ncbi-tools++/objtools/logging/message.hpp
 3704include/ncbi-tools++/objtools/pubseq_gateway/client/impl/misc.hpp
 3705include/ncbi-tools++/objtools/pubseq_gateway/client/psg_client.hpp
3607include/ncbi-tools++/objtools/readers/agp_converter.hpp 3706include/ncbi-tools++/objtools/readers/agp_converter.hpp
3608include/ncbi-tools++/objtools/readers/agp_read.hpp 3707include/ncbi-tools++/objtools/readers/agp_read.hpp
3609include/ncbi-tools++/objtools/readers/agp_seq_entry.hpp 3708include/ncbi-tools++/objtools/readers/agp_seq_entry.hpp
3610include/ncbi-tools++/objtools/readers/agp_util.hpp 3709include/ncbi-tools++/objtools/readers/agp_util.hpp
3611include/ncbi-tools++/objtools/readers/agp_validate_reader.hpp 3710include/ncbi-tools++/objtools/readers/agp_validate_reader.hpp
 3711include/ncbi-tools++/objtools/readers/aln_error_reporter.hpp
 3712include/ncbi-tools++/objtools/readers/aln_formats.hpp
3612include/ncbi-tools++/objtools/readers/aln_reader.hpp 3713include/ncbi-tools++/objtools/readers/aln_reader.hpp
 3714include/ncbi-tools++/objtools/readers/alnread.hpp
3613include/ncbi-tools++/objtools/readers/bed_reader.hpp 3715include/ncbi-tools++/objtools/readers/bed_reader.hpp
3614include/ncbi-tools++/objtools/readers/cigar.hpp 3716include/ncbi-tools++/objtools/readers/cigar.hpp
3615include/ncbi-tools++/objtools/readers/error_container.hpp 3717include/ncbi-tools++/objtools/readers/error_container.hpp
3616include/ncbi-tools++/objtools/readers/fasta.hpp 3718include/ncbi-tools++/objtools/readers/fasta.hpp
3617include/ncbi-tools++/objtools/readers/fasta_exception.hpp 3719include/ncbi-tools++/objtools/readers/fasta_exception.hpp
3618include/ncbi-tools++/objtools/readers/fasta_reader_utils.hpp 3720include/ncbi-tools++/objtools/readers/fasta_reader_utils.hpp
3619include/ncbi-tools++/objtools/readers/featuredump.hpp 3721include/ncbi-tools++/objtools/readers/featuredump.hpp
3620include/ncbi-tools++/objtools/readers/format_guess_ex.hpp 3722include/ncbi-tools++/objtools/readers/format_guess_ex.hpp
3621include/ncbi-tools++/objtools/readers/getfeature.hpp 3723include/ncbi-tools++/objtools/readers/getfeature.hpp
3622include/ncbi-tools++/objtools/readers/gff2_data.hpp 3724include/ncbi-tools++/objtools/readers/gff2_data.hpp
3623include/ncbi-tools++/objtools/readers/gff2_reader.hpp 3725include/ncbi-tools++/objtools/readers/gff2_reader.hpp
3624include/ncbi-tools++/objtools/readers/gff3_reader.hpp 3726include/ncbi-tools++/objtools/readers/gff3_reader.hpp
3625include/ncbi-tools++/objtools/readers/gff3_sofa.hpp 3727include/ncbi-tools++/objtools/readers/gff3_sofa.hpp
 3728include/ncbi-tools++/objtools/readers/gff_base_columns.hpp
3626include/ncbi-tools++/objtools/readers/gff_reader.hpp 3729include/ncbi-tools++/objtools/readers/gff_reader.hpp
3627include/ncbi-tools++/objtools/readers/glimmer_reader.hpp 3730include/ncbi-tools++/objtools/readers/glimmer_reader.hpp
3628include/ncbi-tools++/objtools/readers/gtf_reader.hpp 3731include/ncbi-tools++/objtools/readers/gtf_reader.hpp
3629include/ncbi-tools++/objtools/readers/gvf_reader.hpp 3732include/ncbi-tools++/objtools/readers/gvf_reader.hpp
3630include/ncbi-tools++/objtools/readers/idmapper.hpp 3733include/ncbi-tools++/objtools/readers/idmapper.hpp
3631include/ncbi-tools++/objtools/readers/iidmapper.hpp 3734include/ncbi-tools++/objtools/readers/iidmapper.hpp
3632include/ncbi-tools++/objtools/readers/line_error.hpp 3735include/ncbi-tools++/objtools/readers/line_error.hpp
3633include/ncbi-tools++/objtools/readers/message_listener.hpp 3736include/ncbi-tools++/objtools/readers/message_listener.hpp
3634include/ncbi-tools++/objtools/readers/microarray_reader.hpp 3737include/ncbi-tools++/objtools/readers/microarray_reader.hpp
 3738include/ncbi-tools++/objtools/readers/mod_error.hpp
 3739include/ncbi-tools++/objtools/readers/mod_reader.hpp
3635include/ncbi-tools++/objtools/readers/phrap.hpp 3740include/ncbi-tools++/objtools/readers/phrap.hpp
 3741include/ncbi-tools++/objtools/readers/psl_reader.hpp
3636include/ncbi-tools++/objtools/readers/read_util.hpp 3742include/ncbi-tools++/objtools/readers/read_util.hpp
3637include/ncbi-tools++/objtools/readers/reader_base.hpp 3743include/ncbi-tools++/objtools/readers/reader_base.hpp
 3744include/ncbi-tools++/objtools/readers/reader_error_codes.hpp
3638include/ncbi-tools++/objtools/readers/reader_exception.hpp 3745include/ncbi-tools++/objtools/readers/reader_exception.hpp
3639include/ncbi-tools++/objtools/readers/reader_idgen.hpp 3746include/ncbi-tools++/objtools/readers/reader_idgen.hpp
 3747include/ncbi-tools++/objtools/readers/reader_listener.hpp
 3748include/ncbi-tools++/objtools/readers/reader_message.hpp
3640include/ncbi-tools++/objtools/readers/readfeat.hpp 3749include/ncbi-tools++/objtools/readers/readfeat.hpp
3641include/ncbi-tools++/objtools/readers/rm_reader.hpp 3750include/ncbi-tools++/objtools/readers/rm_reader.hpp
 3751include/ncbi-tools++/objtools/readers/seqid_validate.hpp
3642include/ncbi-tools++/objtools/readers/source_mod_parser.hpp 3752include/ncbi-tools++/objtools/readers/source_mod_parser.hpp
3643include/ncbi-tools++/objtools/readers/source_mod_parser_wrapper.hpp 3753include/ncbi-tools++/objtools/readers/source_mod_parser_wrapper.hpp
3644include/ncbi-tools++/objtools/readers/struct_cmt_reader.hpp 3754include/ncbi-tools++/objtools/readers/struct_cmt_reader.hpp
3645include/ncbi-tools++/objtools/readers/table_filter.hpp 3755include/ncbi-tools++/objtools/readers/table_filter.hpp
3646include/ncbi-tools++/objtools/readers/track_data.hpp 3756include/ncbi-tools++/objtools/readers/track_data.hpp
3647include/ncbi-tools++/objtools/readers/ucscregion_reader.hpp 3757include/ncbi-tools++/objtools/readers/ucscregion_reader.hpp
3648include/ncbi-tools++/objtools/readers/vcf_reader.hpp 3758include/ncbi-tools++/objtools/readers/vcf_reader.hpp
3649include/ncbi-tools++/objtools/readers/wiggle_reader.hpp 3759include/ncbi-tools++/objtools/readers/wiggle_reader.hpp
3650include/ncbi-tools++/objtools/seqmasks_io/mask_bdb_reader.hpp 3760include/ncbi-tools++/objtools/seqmasks_io/mask_bdb_reader.hpp
3651include/ncbi-tools++/objtools/seqmasks_io/mask_cmdline_args.hpp 3761include/ncbi-tools++/objtools/seqmasks_io/mask_cmdline_args.hpp
3652include/ncbi-tools++/objtools/seqmasks_io/mask_fasta_reader.hpp 3762include/ncbi-tools++/objtools/seqmasks_io/mask_fasta_reader.hpp
3653include/ncbi-tools++/objtools/seqmasks_io/mask_reader.hpp 3763include/ncbi-tools++/objtools/seqmasks_io/mask_reader.hpp
3654include/ncbi-tools++/objtools/seqmasks_io/mask_writer.hpp 3764include/ncbi-tools++/objtools/seqmasks_io/mask_writer.hpp
3655include/ncbi-tools++/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp 3765include/ncbi-tools++/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.hpp
3656include/ncbi-tools++/objtools/seqmasks_io/mask_writer_fasta.hpp 3766include/ncbi-tools++/objtools/seqmasks_io/mask_writer_fasta.hpp
3657include/ncbi-tools++/objtools/seqmasks_io/mask_writer_int.hpp 3767include/ncbi-tools++/objtools/seqmasks_io/mask_writer_int.hpp
3658include/ncbi-tools++/objtools/seqmasks_io/mask_writer_seqloc.hpp 3768include/ncbi-tools++/objtools/seqmasks_io/mask_writer_seqloc.hpp
3659include/ncbi-tools++/objtools/seqmasks_io/mask_writer_tab.hpp 3769include/ncbi-tools++/objtools/seqmasks_io/mask_writer_tab.hpp
3660include/ncbi-tools++/objtools/simple/simple_om.hpp 3770include/ncbi-tools++/objtools/simple/simple_om.hpp
3661include/ncbi-tools++/serial/delaybuf.hpp 3771include/ncbi-tools++/serial/delaybuf.hpp
3662include/ncbi-tools++/serial/enumvalues.hpp 3772include/ncbi-tools++/serial/enumvalues.hpp
3663include/ncbi-tools++/serial/error_codes.hpp 3773include/ncbi-tools++/serial/error_codes.hpp
3664include/ncbi-tools++/serial/exception.hpp 3774include/ncbi-tools++/serial/exception.hpp
 3775include/ncbi-tools++/serial/grpc_integration/grpc_integration.hpp
 3776include/ncbi-tools++/serial/grpc_integration/impl/grpc_support.hpp
3665include/ncbi-tools++/serial/impl/aliasinfo.hpp 3777include/ncbi-tools++/serial/impl/aliasinfo.hpp
3666include/ncbi-tools++/serial/impl/asntypes.hpp 3778include/ncbi-tools++/serial/impl/asntypes.hpp
3667include/ncbi-tools++/serial/impl/autoptrinfo.hpp 3779include/ncbi-tools++/serial/impl/autoptrinfo.hpp
3668include/ncbi-tools++/serial/impl/choice.hpp 3780include/ncbi-tools++/serial/impl/choice.hpp
3669include/ncbi-tools++/serial/impl/choice.inl 3781include/ncbi-tools++/serial/impl/choice.inl
3670include/ncbi-tools++/serial/impl/choiceptr.hpp 3782include/ncbi-tools++/serial/impl/choiceptr.hpp
3671include/ncbi-tools++/serial/impl/classinfo.hpp 3783include/ncbi-tools++/serial/impl/classinfo.hpp
3672include/ncbi-tools++/serial/impl/classinfo.inl 3784include/ncbi-tools++/serial/impl/classinfo.inl
3673include/ncbi-tools++/serial/impl/classinfob.hpp 3785include/ncbi-tools++/serial/impl/classinfob.hpp
3674include/ncbi-tools++/serial/impl/classinfob.inl 3786include/ncbi-tools++/serial/impl/classinfob.inl
3675include/ncbi-tools++/serial/impl/classinfohelper.hpp 3787include/ncbi-tools++/serial/impl/classinfohelper.hpp
3676include/ncbi-tools++/serial/impl/continfo.hpp 3788include/ncbi-tools++/serial/impl/continfo.hpp
3677include/ncbi-tools++/serial/impl/continfo.inl 3789include/ncbi-tools++/serial/impl/continfo.inl
@@ -3749,97 +3861,111 @@ include/ncbi-tools++/serial/serialdef.hp @@ -3749,97 +3861,111 @@ include/ncbi-tools++/serial/serialdef.hp
3749include/ncbi-tools++/serial/serialimpl.hpp 3861include/ncbi-tools++/serial/serialimpl.hpp
3750include/ncbi-tools++/serial/serializable.hpp 3862include/ncbi-tools++/serial/serializable.hpp
3751include/ncbi-tools++/serial/serialutil.hpp 3863include/ncbi-tools++/serial/serialutil.hpp
3752include/ncbi-tools++/serial/streamiter.hpp 3864include/ncbi-tools++/serial/streamiter.hpp
3753include/ncbi-tools++/serial/typeinfo.hpp 3865include/ncbi-tools++/serial/typeinfo.hpp
3754include/ncbi-tools++/util/align_range.hpp 3866include/ncbi-tools++/util/align_range.hpp
3755include/ncbi-tools++/util/align_range_coll.hpp 3867include/ncbi-tools++/util/align_range_coll.hpp
3756include/ncbi-tools++/util/align_range_oper.hpp 3868include/ncbi-tools++/util/align_range_oper.hpp
3757include/ncbi-tools++/util/arg_regexp.hpp 3869include/ncbi-tools++/util/arg_regexp.hpp
3758include/ncbi-tools++/util/ascii85.hpp 3870include/ncbi-tools++/util/ascii85.hpp
3759include/ncbi-tools++/util/bitset/bitset_debug.hpp 3871include/ncbi-tools++/util/bitset/bitset_debug.hpp
3760include/ncbi-tools++/util/bitset/bitset_pool.hpp 3872include/ncbi-tools++/util/bitset/bitset_pool.hpp
3761include/ncbi-tools++/util/bitset/bm.h 3873include/ncbi-tools++/util/bitset/bm.h
 3874include/ncbi-tools++/util/bitset/bm64.h
 3875include/ncbi-tools++/util/bitset/bmaggregator.h
3762include/ncbi-tools++/util/bitset/bmalgo.h 3876include/ncbi-tools++/util/bitset/bmalgo.h
3763include/ncbi-tools++/util/bitset/bmalgo_impl.h 3877include/ncbi-tools++/util/bitset/bmalgo_impl.h
3764include/ncbi-tools++/util/bitset/bmalgo_similarity.h 3878include/ncbi-tools++/util/bitset/bmalgo_similarity.h
3765include/ncbi-tools++/util/bitset/bmalloc.h 3879include/ncbi-tools++/util/bitset/bmalloc.h
3766include/ncbi-tools++/util/bitset/bmavx2.h 3880include/ncbi-tools++/util/bitset/bmavx2.h
 3881include/ncbi-tools++/util/bitset/bmavx512.h
3767include/ncbi-tools++/util/bitset/bmblocks.h 3882include/ncbi-tools++/util/bitset/bmblocks.h
 3883include/ncbi-tools++/util/bitset/bmbmatrix.h
 3884include/ncbi-tools++/util/bitset/bmbmi1.h
 3885include/ncbi-tools++/util/bitset/bmbmi2.h
3768include/ncbi-tools++/util/bitset/bmbuffer.h 3886include/ncbi-tools++/util/bitset/bmbuffer.h
3769include/ncbi-tools++/util/bitset/bmconst.h 3887include/ncbi-tools++/util/bitset/bmconst.h
3770include/ncbi-tools++/util/bitset/bmdbg.h 3888include/ncbi-tools++/util/bitset/bmdbg.h
3771include/ncbi-tools++/util/bitset/bmdef.h 3889include/ncbi-tools++/util/bitset/bmdef.h
3772include/ncbi-tools++/util/bitset/bmfunc.h 3890include/ncbi-tools++/util/bitset/bmfunc.h
3773include/ncbi-tools++/util/bitset/bmfwd.h 3891include/ncbi-tools++/util/bitset/bmfwd.h
3774include/ncbi-tools++/util/bitset/bmgamma.h 3892include/ncbi-tools++/util/bitset/bmgamma.h
 3893include/ncbi-tools++/util/bitset/bmintervals.h
3775include/ncbi-tools++/util/bitset/bmrandom.h 3894include/ncbi-tools++/util/bitset/bmrandom.h
 3895include/ncbi-tools++/util/bitset/bmrs.h
3776include/ncbi-tools++/util/bitset/bmserial.h 3896include/ncbi-tools++/util/bitset/bmserial.h
3777include/ncbi-tools++/util/bitset/bmsimd.h 3897include/ncbi-tools++/util/bitset/bmsimd.h
3778include/ncbi-tools++/util/bitset/bmsparsevec.h 3898include/ncbi-tools++/util/bitset/bmsparsevec.h
3779include/ncbi-tools++/util/bitset/bmsparsevec_algo.h 3899include/ncbi-tools++/util/bitset/bmsparsevec_algo.h
3780include/ncbi-tools++/util/bitset/bmsparsevec_compr.h 3900include/ncbi-tools++/util/bitset/bmsparsevec_compr.h
3781include/ncbi-tools++/util/bitset/bmsparsevec_serial.h 3901include/ncbi-tools++/util/bitset/bmsparsevec_serial.h
3782include/ncbi-tools++/util/bitset/bmsparsevec_util.h 3902include/ncbi-tools++/util/bitset/bmsparsevec_util.h
3783include/ncbi-tools++/util/bitset/bmsse2.h 3903include/ncbi-tools++/util/bitset/bmsse2.h
3784include/ncbi-tools++/util/bitset/bmsse4.h 3904include/ncbi-tools++/util/bitset/bmsse4.h
3785include/ncbi-tools++/util/bitset/bmsse_util.h 3905include/ncbi-tools++/util/bitset/bmsse_util.h
 3906include/ncbi-tools++/util/bitset/bmstrsparsevec.h
3786include/ncbi-tools++/util/bitset/bmtimer.h 3907include/ncbi-tools++/util/bitset/bmtimer.h
3787include/ncbi-tools++/util/bitset/bmtrans.h 3908include/ncbi-tools++/util/bitset/bmtrans.h
3788include/ncbi-tools++/util/bitset/bmundef.h 3909include/ncbi-tools++/util/bitset/bmundef.h
3789include/ncbi-tools++/util/bitset/bmutil.h 3910include/ncbi-tools++/util/bitset/bmutil.h
3790include/ncbi-tools++/util/bitset/bmvmin.h 3911include/ncbi-tools++/util/bitset/bmvmin.h
 3912include/ncbi-tools++/util/bitset/bmxor.h
3791include/ncbi-tools++/util/bitset/encoding.h 3913include/ncbi-tools++/util/bitset/encoding.h
3792include/ncbi-tools++/util/bitset/license.txt 3914include/ncbi-tools++/util/bitset/license.txt
3793include/ncbi-tools++/util/bitset/ncbi_bitset.hpp 3915include/ncbi-tools++/util/bitset/ncbi_bitset.hpp
3794include/ncbi-tools++/util/bitset/ncbi_bitset_alloc.hpp 3916include/ncbi-tools++/util/bitset/ncbi_bitset_alloc.hpp
3795include/ncbi-tools++/util/bitset/ncbi_bitset_util.hpp 3917include/ncbi-tools++/util/bitset/ncbi_bitset_util.hpp
3796include/ncbi-tools++/util/bitset/readme 3918include/ncbi-tools++/util/bitset/readme
3797include/ncbi-tools++/util/buffer_writer.hpp 3919include/ncbi-tools++/util/buffer_writer.hpp
3798include/ncbi-tools++/util/bytesrc.hpp 3920include/ncbi-tools++/util/bytesrc.hpp
3799include/ncbi-tools++/util/cache/cache_async.hpp 3921include/ncbi-tools++/util/cache/cache_async.hpp
3800include/ncbi-tools++/util/cache/cache_ref.hpp 3922include/ncbi-tools++/util/cache/cache_ref.hpp
3801include/ncbi-tools++/util/cache/icache.hpp 3923include/ncbi-tools++/util/cache/icache.hpp
3802include/ncbi-tools++/util/cache/icache_cf.hpp 3924include/ncbi-tools++/util/cache/icache_cf.hpp
3803include/ncbi-tools++/util/cache/icache_clean_thread.hpp 3925include/ncbi-tools++/util/cache/icache_clean_thread.hpp
3804include/ncbi-tools++/util/checksum.hpp 3926include/ncbi-tools++/util/checksum.hpp
 3927include/ncbi-tools++/util/compile_time.hpp
3805include/ncbi-tools++/util/compress/archive.hpp 3928include/ncbi-tools++/util/compress/archive.hpp
3806include/ncbi-tools++/util/compress/archive_.hpp 3929include/ncbi-tools++/util/compress/archive_.hpp
3807include/ncbi-tools++/util/compress/bzip2.hpp 3930include/ncbi-tools++/util/compress/bzip2.hpp
3808include/ncbi-tools++/util/compress/bzip2/bzlib.h 3931include/ncbi-tools++/util/compress/bzip2/bzlib.h
3809include/ncbi-tools++/util/compress/compress.hpp 3932include/ncbi-tools++/util/compress/compress.hpp
3810include/ncbi-tools++/util/compress/lzo.hpp 3933include/ncbi-tools++/util/compress/lzo.hpp
3811include/ncbi-tools++/util/compress/reader_zlib.hpp 3934include/ncbi-tools++/util/compress/reader_zlib.hpp
3812include/ncbi-tools++/util/compress/stream.hpp 3935include/ncbi-tools++/util/compress/stream.hpp
3813include/ncbi-tools++/util/compress/stream_util.hpp 3936include/ncbi-tools++/util/compress/stream_util.hpp
3814include/ncbi-tools++/util/compress/tar.hpp 3937include/ncbi-tools++/util/compress/tar.hpp
3815include/ncbi-tools++/util/compress/zlib.hpp 3938include/ncbi-tools++/util/compress/zlib.hpp
3816include/ncbi-tools++/util/compress/zlib/zconf.h 3939include/ncbi-tools++/util/compress/zlib/zconf.h
3817include/ncbi-tools++/util/compress/zlib/zlib.h 3940include/ncbi-tools++/util/compress/zlib/zlib.h
3818include/ncbi-tools++/util/compress/zlib/zutil.h 3941include/ncbi-tools++/util/compress/zlib/zutil.h
3819include/ncbi-tools++/util/creaders/alnread.h 3942include/ncbi-tools++/util/creaders/alnread.h
3820include/ncbi-tools++/util/creaders/creaders_export.h 3943include/ncbi-tools++/util/creaders/creaders_export.h
 3944include/ncbi-tools++/util/data_histogram.hpp
3821include/ncbi-tools++/util/ddump_viewer.hpp 3945include/ncbi-tools++/util/ddump_viewer.hpp
3822include/ncbi-tools++/util/dictionary.hpp 3946include/ncbi-tools++/util/dictionary.hpp
3823include/ncbi-tools++/util/dictionary_util.hpp 3947include/ncbi-tools++/util/dictionary_util.hpp
3824include/ncbi-tools++/util/distribution.hpp 3948include/ncbi-tools++/util/distribution.hpp
3825include/ncbi-tools++/util/error_codes.hpp 3949include/ncbi-tools++/util/error_codes.hpp
3826include/ncbi-tools++/util/file_manifest.hpp 3950include/ncbi-tools++/util/file_manifest.hpp
3827include/ncbi-tools++/util/file_obsolete.hpp 3951include/ncbi-tools++/util/file_obsolete.hpp
3828include/ncbi-tools++/util/floating_point.hpp 3952include/ncbi-tools++/util/floating_point.hpp
3829include/ncbi-tools++/util/format_guess.hpp 3953include/ncbi-tools++/util/format_guess.hpp
3830include/ncbi-tools++/util/histogram_binning.hpp 3954include/ncbi-tools++/util/histogram_binning.hpp
3831include/ncbi-tools++/util/icanceled.hpp 3955include/ncbi-tools++/util/icanceled.hpp
3832include/ncbi-tools++/util/id_mux.hpp 3956include/ncbi-tools++/util/id_mux.hpp
 3957include/ncbi-tools++/util/impl/compile_time_bits.hpp
 3958include/ncbi-tools++/util/impl/ct_crc32.hpp
3833include/ncbi-tools++/util/impl/floating_point_comparison.hpp 3959include/ncbi-tools++/util/impl/floating_point_comparison.hpp
3834include/ncbi-tools++/util/itransaction.hpp 3960include/ncbi-tools++/util/itransaction.hpp
3835include/ncbi-tools++/util/itree.hpp 3961include/ncbi-tools++/util/itree.hpp
3836include/ncbi-tools++/util/itree.inl 3962include/ncbi-tools++/util/itree.inl
3837include/ncbi-tools++/util/lightstr.hpp 3963include/ncbi-tools++/util/lightstr.hpp
3838include/ncbi-tools++/util/limited_size_map.hpp 3964include/ncbi-tools++/util/limited_size_map.hpp
3839include/ncbi-tools++/util/line_reader.hpp 3965include/ncbi-tools++/util/line_reader.hpp
3840include/ncbi-tools++/util/linkedset.hpp 3966include/ncbi-tools++/util/linkedset.hpp
3841include/ncbi-tools++/util/lmdb/lmdb.h 3967include/ncbi-tools++/util/lmdb/lmdb.h
3842include/ncbi-tools++/util/lmdbxx/lmdb++.h 3968include/ncbi-tools++/util/lmdbxx/lmdb++.h
3843include/ncbi-tools++/util/lock_vector.hpp 3969include/ncbi-tools++/util/lock_vector.hpp
3844include/ncbi-tools++/util/logrotate.hpp 3970include/ncbi-tools++/util/logrotate.hpp
3845include/ncbi-tools++/util/mask_regexp.hpp 3971include/ncbi-tools++/util/mask_regexp.hpp
@@ -3847,26 +3973,27 @@ include/ncbi-tools++/util/math/matrix.hp @@ -3847,26 +3973,27 @@ include/ncbi-tools++/util/math/matrix.hp
3847include/ncbi-tools++/util/math/miscmath.h 3973include/ncbi-tools++/util/math/miscmath.h
3848include/ncbi-tools++/util/math/promote.hpp 3974include/ncbi-tools++/util/math/promote.hpp
3849include/ncbi-tools++/util/md5.hpp 3975include/ncbi-tools++/util/md5.hpp
3850include/ncbi-tools++/util/miscmath.h 3976include/ncbi-tools++/util/miscmath.h
3851include/ncbi-tools++/util/multi_writer.hpp 3977include/ncbi-tools++/util/multi_writer.hpp
3852include/ncbi-tools++/util/multipattern_search.hpp 3978include/ncbi-tools++/util/multipattern_search.hpp
3853include/ncbi-tools++/util/mutex_pool.hpp 3979include/ncbi-tools++/util/mutex_pool.hpp
3854include/ncbi-tools++/util/ncbi_cache.hpp 3980include/ncbi-tools++/util/ncbi_cache.hpp
3855include/ncbi-tools++/util/ncbi_table.hpp 3981include/ncbi-tools++/util/ncbi_table.hpp
3856include/ncbi-tools++/util/ncbi_url.hpp 3982include/ncbi-tools++/util/ncbi_url.hpp
3857include/ncbi-tools++/util/random_gen.hpp 3983include/ncbi-tools++/util/random_gen.hpp
3858include/ncbi-tools++/util/range.hpp 3984include/ncbi-tools++/util/range.hpp
3859include/ncbi-tools++/util/range_coll.hpp 3985include/ncbi-tools++/util/range_coll.hpp
 3986include/ncbi-tools++/util/range_set.hpp
3860include/ncbi-tools++/util/rangelist.hpp 3987include/ncbi-tools++/util/rangelist.hpp
3861include/ncbi-tools++/util/rangemap.hpp 3988include/ncbi-tools++/util/rangemap.hpp
3862include/ncbi-tools++/util/rangemap.inl 3989include/ncbi-tools++/util/rangemap.inl
3863include/ncbi-tools++/util/reader_writer.hpp 3990include/ncbi-tools++/util/reader_writer.hpp
3864include/ncbi-tools++/util/regexp.hpp 3991include/ncbi-tools++/util/regexp.hpp
3865include/ncbi-tools++/util/regexp/pcre.h 3992include/ncbi-tools++/util/regexp/pcre.h
3866include/ncbi-tools++/util/regexp/pcrecpp.h 3993include/ncbi-tools++/util/regexp/pcrecpp.h
3867include/ncbi-tools++/util/regexp/pcrecpparg.h 3994include/ncbi-tools++/util/regexp/pcrecpparg.h
3868include/ncbi-tools++/util/regexp/pcreposix.h 3995include/ncbi-tools++/util/regexp/pcreposix.h
3869include/ncbi-tools++/util/request_control.hpp 3996include/ncbi-tools++/util/request_control.hpp
3870include/ncbi-tools++/util/resize_iter.hpp 3997include/ncbi-tools++/util/resize_iter.hpp
3871include/ncbi-tools++/util/resource_pool.hpp 3998include/ncbi-tools++/util/resource_pool.hpp
3872include/ncbi-tools++/util/retry_ctx.hpp 3999include/ncbi-tools++/util/retry_ctx.hpp
@@ -3941,59 +4068,61 @@ lib/ncbi-tools++/libblastxml-static.a @@ -3941,59 +4068,61 @@ lib/ncbi-tools++/libblastxml-static.a
3941lib/ncbi-tools++/libblastxml.a 4068lib/ncbi-tools++/libblastxml.a
3942lib/ncbi-tools++/libblastxml2-static.a 4069lib/ncbi-tools++/libblastxml2-static.a
3943lib/ncbi-tools++/libblastxml2.a 4070lib/ncbi-tools++/libblastxml2.a
3944lib/ncbi-tools++/libcdd-static.a 4071lib/ncbi-tools++/libcdd-static.a
3945lib/ncbi-tools++/libcdd.a 4072lib/ncbi-tools++/libcdd.a
3946lib/ncbi-tools++/libcn3d-static.a 4073lib/ncbi-tools++/libcn3d-static.a
3947lib/ncbi-tools++/libcn3d.a 4074lib/ncbi-tools++/libcn3d.a
3948lib/ncbi-tools++/libcomposition_adjustment-static.a 4075lib/ncbi-tools++/libcomposition_adjustment-static.a
3949lib/ncbi-tools++/libcomposition_adjustment.a 4076lib/ncbi-tools++/libcomposition_adjustment.a
3950lib/ncbi-tools++/libconnect-static.a 4077lib/ncbi-tools++/libconnect-static.a
3951lib/ncbi-tools++/libconnect.a 4078lib/ncbi-tools++/libconnect.a
3952lib/ncbi-tools++/libconnssl-static.a 4079lib/ncbi-tools++/libconnssl-static.a
3953lib/ncbi-tools++/libconnssl.a 4080lib/ncbi-tools++/libconnssl.a
3954lib/ncbi-tools++/libcreaders-static.a 
3955lib/ncbi-tools++/libcreaders.a 
3956lib/ncbi-tools++/libdbapi-static.a 4081lib/ncbi-tools++/libdbapi-static.a
3957lib/ncbi-tools++/libdbapi.a 4082lib/ncbi-tools++/libdbapi.a
3958lib/ncbi-tools++/libdbapi_driver-dll.so 4083lib/ncbi-tools++/libdbapi_driver-dll.so
3959lib/ncbi-tools++/libdbapi_driver-static.a 4084lib/ncbi-tools++/libdbapi_driver-static.a
3960lib/ncbi-tools++/libdbapi_driver.a 4085lib/ncbi-tools++/libdbapi_driver.a
 4086lib/ncbi-tools++/libdbsnp_ptis-static.a
 4087lib/ncbi-tools++/libdbsnp_ptis.a
3961lib/ncbi-tools++/libdbsnp_tooltip_service-static.a 4088lib/ncbi-tools++/libdbsnp_tooltip_service-static.a
3962lib/ncbi-tools++/libdbsnp_tooltip_service.a 4089lib/ncbi-tools++/libdbsnp_tooltip_service.a
3963lib/ncbi-tools++/libdocsum-static.a 4090lib/ncbi-tools++/libdocsum-static.a
3964lib/ncbi-tools++/libdocsum.a 4091lib/ncbi-tools++/libdocsum.a
3965lib/ncbi-tools++/libentrez2-static.a 4092lib/ncbi-tools++/libentrez2-static.a
3966lib/ncbi-tools++/libentrez2.a 4093lib/ncbi-tools++/libentrez2.a
3967lib/ncbi-tools++/libentrez2cli-static.a 4094lib/ncbi-tools++/libentrez2cli-static.a
3968lib/ncbi-tools++/libentrez2cli.a 4095lib/ncbi-tools++/libentrez2cli.a
3969lib/ncbi-tools++/libentrezgene-static.a 4096lib/ncbi-tools++/libentrezgene-static.a
3970lib/ncbi-tools++/libentrezgene.a 4097lib/ncbi-tools++/libentrezgene.a
3971lib/ncbi-tools++/libfeatdef-static.a 4098lib/ncbi-tools++/libfeatdef-static.a
3972lib/ncbi-tools++/libfeatdef.a 4099lib/ncbi-tools++/libfeatdef.a
3973lib/ncbi-tools++/libgbproj-static.a 4100lib/ncbi-tools++/libgbproj-static.a
3974lib/ncbi-tools++/libgbproj.a 4101lib/ncbi-tools++/libgbproj.a
3975lib/ncbi-tools++/libgbseq-static.a 4102lib/ncbi-tools++/libgbseq-static.a
3976lib/ncbi-tools++/libgbseq.a 4103lib/ncbi-tools++/libgbseq.a
3977lib/ncbi-tools++/libgencoll_client-static.a 4104lib/ncbi-tools++/libgencoll_client-static.a
3978lib/ncbi-tools++/libgencoll_client.a 4105lib/ncbi-tools++/libgencoll_client.a
3979lib/ncbi-tools++/libgene_info-static.a 4106lib/ncbi-tools++/libgene_info-static.a
3980lib/ncbi-tools++/libgene_info.a 4107lib/ncbi-tools++/libgene_info.a
3981lib/ncbi-tools++/libgeneral-static.a 4108lib/ncbi-tools++/libgeneral-static.a
3982lib/ncbi-tools++/libgeneral.a 4109lib/ncbi-tools++/libgeneral.a
3983lib/ncbi-tools++/libgenesbyloc-static.a 4110lib/ncbi-tools++/libgenesbyloc-static.a
3984lib/ncbi-tools++/libgenesbyloc.a 4111lib/ncbi-tools++/libgenesbyloc.a
3985lib/ncbi-tools++/libgenome_collection-static.a 4112lib/ncbi-tools++/libgenome_collection-static.a
3986lib/ncbi-tools++/libgenome_collection.a 4113lib/ncbi-tools++/libgenome_collection.a
 4114lib/ncbi-tools++/libgrpc_integration-static.a
 4115lib/ncbi-tools++/libgrpc_integration.a
3987lib/ncbi-tools++/libhomologene-static.a 4116lib/ncbi-tools++/libhomologene-static.a
3988lib/ncbi-tools++/libhomologene.a 4117lib/ncbi-tools++/libhomologene.a
3989lib/ncbi-tools++/libid1-static.a 4118lib/ncbi-tools++/libid1-static.a
3990lib/ncbi-tools++/libid1.a 4119lib/ncbi-tools++/libid1.a
3991lib/ncbi-tools++/libid1cli-static.a 4120lib/ncbi-tools++/libid1cli-static.a
3992lib/ncbi-tools++/libid1cli.a 4121lib/ncbi-tools++/libid1cli.a
3993lib/ncbi-tools++/libid2-static.a 4122lib/ncbi-tools++/libid2-static.a
3994lib/ncbi-tools++/libid2.a 4123lib/ncbi-tools++/libid2.a
3995lib/ncbi-tools++/libid2_split-static.a 4124lib/ncbi-tools++/libid2_split-static.a
3996lib/ncbi-tools++/libid2_split.a 4125lib/ncbi-tools++/libid2_split.a
3997lib/ncbi-tools++/libid2cli-static.a 4126lib/ncbi-tools++/libid2cli-static.a
3998lib/ncbi-tools++/libid2cli.a 4127lib/ncbi-tools++/libid2cli.a
3999lib/ncbi-tools++/libigblast-static.a 4128lib/ncbi-tools++/libigblast-static.a
@@ -4052,26 +4181,28 @@ lib/ncbi-tools++/libobjcoords-static.a @@ -4052,26 +4181,28 @@ lib/ncbi-tools++/libobjcoords-static.a
4052lib/ncbi-tools++/libobjcoords.a 4181lib/ncbi-tools++/libobjcoords.a
4053lib/ncbi-tools++/libobjprt-static.a 4182lib/ncbi-tools++/libobjprt-static.a
4054lib/ncbi-tools++/libobjprt.a 4183lib/ncbi-tools++/libobjprt.a
4055lib/ncbi-tools++/libomssa-static.a 4184lib/ncbi-tools++/libomssa-static.a
4056lib/ncbi-tools++/libomssa.a 4185lib/ncbi-tools++/libomssa.a
4057lib/ncbi-tools++/libpcassay-static.a 4186lib/ncbi-tools++/libpcassay-static.a
4058lib/ncbi-tools++/libpcassay.a 4187lib/ncbi-tools++/libpcassay.a
4059lib/ncbi-tools++/libpcsubstance-static.a 4188lib/ncbi-tools++/libpcsubstance-static.a
4060lib/ncbi-tools++/libpcsubstance.a 4189lib/ncbi-tools++/libpcsubstance.a
4061lib/ncbi-tools++/libproj-static.a 4190lib/ncbi-tools++/libproj-static.a
4062lib/ncbi-tools++/libproj.a 4191lib/ncbi-tools++/libproj.a
4063lib/ncbi-tools++/libproteinkmer-static.a 4192lib/ncbi-tools++/libproteinkmer-static.a
4064lib/ncbi-tools++/libproteinkmer.a 4193lib/ncbi-tools++/libproteinkmer.a
 4194lib/ncbi-tools++/libpsg_client-static.a
 4195lib/ncbi-tools++/libpsg_client.a
4065lib/ncbi-tools++/libpub-static.a 4196lib/ncbi-tools++/libpub-static.a
4066lib/ncbi-tools++/libpub.a 4197lib/ncbi-tools++/libpub.a
4067lib/ncbi-tools++/libpubmed-static.a 4198lib/ncbi-tools++/libpubmed-static.a
4068lib/ncbi-tools++/libpubmed.a 4199lib/ncbi-tools++/libpubmed.a
4069lib/ncbi-tools++/libremap-static.a 4200lib/ncbi-tools++/libremap-static.a
4070lib/ncbi-tools++/libremap.a 4201lib/ncbi-tools++/libremap.a
4071lib/ncbi-tools++/libremapcli-static.a 4202lib/ncbi-tools++/libremapcli-static.a
4072lib/ncbi-tools++/libremapcli.a 4203lib/ncbi-tools++/libremapcli.a
4073lib/ncbi-tools++/libscoremat-static.a 4204lib/ncbi-tools++/libscoremat-static.a
4074lib/ncbi-tools++/libscoremat.a 4205lib/ncbi-tools++/libscoremat.a
4075lib/ncbi-tools++/libsearchbyrsid-static.a 4206lib/ncbi-tools++/libsearchbyrsid-static.a
4076lib/ncbi-tools++/libsearchbyrsid.a 4207lib/ncbi-tools++/libsearchbyrsid.a
4077lib/ncbi-tools++/libseq-static.a 4208lib/ncbi-tools++/libseq-static.a
cvs diff -r1.2 -r1.3 pkgsrc/biology/ncbi-blast+/buildlink3.mk (expand / switch to unified diff)

--- pkgsrc/biology/ncbi-blast+/buildlink3.mk 2018/04/29 21:00:04 1.2
+++ pkgsrc/biology/ncbi-blast+/buildlink3.mk 2021/06/11 13:47:40 1.3
@@ -1,13 +1,13 @@ @@ -1,13 +1,13 @@
1# $NetBSD: buildlink3.mk,v 1.2 2018/04/29 21:00:04 adam Exp $ 1# $NetBSD: buildlink3.mk,v 1.3 2021/06/11 13:47:40 bacon Exp $
2 2
3BUILDLINK_TREE+= ncbi-blast+ 3BUILDLINK_TREE+= ncbi-blast+
4 4
5.if !defined(NCBI_BLAST+_BUILDLINK3_MK) 5.if !defined(NCBI_BLAST+_BUILDLINK3_MK)
6NCBI_BLAST+_BUILDLINK3_MK:= 6NCBI_BLAST+_BUILDLINK3_MK:=
7 7
8BUILDLINK_API_DEPENDS.ncbi-blast++= ncbi-blast+>=2.7.1 8BUILDLINK_API_DEPENDS.ncbi-blast++= ncbi-blast+>=2.11.0
9BUILDLINK_PKGSRCDIR.ncbi-blast+?= ../../biology/ncbi-blast+ 9BUILDLINK_PKGSRCDIR.ncbi-blast+?= ../../biology/ncbi-blast+
10 10
11.endif # NCBI_BLAST+_BUILDLINK3_MK 11.endif # NCBI_BLAST+_BUILDLINK3_MK
12 12
13BUILDLINK_TREE+= -ncbi-blast+ 13BUILDLINK_TREE+= -ncbi-blast+
cvs diff -r1.3 -r1.4 pkgsrc/biology/ncbi-blast+/distinfo (expand / switch to unified diff)

--- pkgsrc/biology/ncbi-blast+/distinfo 2019/01/07 15:00:10 1.3
+++ pkgsrc/biology/ncbi-blast+/distinfo 2021/06/11 13:47:40 1.4
@@ -1,14 +1,13 @@ @@ -1,14 +1,13 @@
1$NetBSD: distinfo,v 1.3 2019/01/07 15:00:10 bacon Exp $ 1$NetBSD: distinfo,v 1.4 2021/06/11 13:47:40 bacon Exp $
2 2
3SHA1 (ncbi-blast-2.8.1+-src.tar.gz) = 16573b642d7861d0bed67f3eb1174fc646819eec 3SHA1 (ncbi-blast-2.11.0+-src.tar.gz) = af9bdc82ec01959fb2ab8367636face8a0ef3e91
4RMD160 (ncbi-blast-2.8.1+-src.tar.gz) = ef8df6c4b3cae18b2ab4509af15554ee8d8f9bfd 4RMD160 (ncbi-blast-2.11.0+-src.tar.gz) = a8036dca9cc85b589bbb7f7f24e47c7e0053ead6
5SHA512 (ncbi-blast-2.8.1+-src.tar.gz) = 3f408c5f76704183578828df3272bab7d59dd6052364e73e1831cd005b87d87dcc086bb1799b316b09e639e4af0edea6404b93a4b3e3c159d27cef34fff93d6f 5SHA512 (ncbi-blast-2.11.0+-src.tar.gz) = 617994a0e3a4675a5f7048f165ac405bbd6a715ece9aba115d7c26b6be446b889b817dd496a2e15673545e5b594684c83fc4edb22cb5ecca2fd6d342c3bd642e
6Size (ncbi-blast-2.8.1+-src.tar.gz) = 24973554 bytes 6Size (ncbi-blast-2.11.0+-src.tar.gz) = 58493096 bytes
7SHA1 (patch-compilers_xcode30__prj_configure) = b89b3be8671c6c692ba474476879ee67a76fdbe5 7SHA1 (patch-compilers_xcode30__prj_configure) = b89b3be8671c6c692ba474476879ee67a76fdbe5
8SHA1 (patch-src_algo_blast_core_blast__kappa.c) = 6fcad996b3a8e5b6c2400608bff9de62ebf6927f 8SHA1 (patch-src_algo_blast_core_blast__kappa.c) = 6fcad996b3a8e5b6c2400608bff9de62ebf6927f
9SHA1 (patch-src_build-system_Makefile.in.top) = 71d5246867a8c985c1175c338fb0af664094ca01 9SHA1 (patch-src_build-system_Makefile.in.top) = 71d5246867a8c985c1175c338fb0af664094ca01
10SHA1 (patch-src_build-system_cmake_cmake-cfg-unix.sh) = 90468f3109800e01fc7351926adb331919a12fb2 10SHA1 (patch-src_build-system_cmake_cmake-cfg-xcode.sh) = 9167a5092d30da46a06b0be05199afa3b08680c6
11SHA1 (patch-src_build-system_cmake_cmake-configure) = 7b9a10447b1dd665200ee73a2180b3210f586b97 11SHA1 (patch-src_build-system_configure) = 95185d53179a69a1b1cfa6870aca36dd962d2c43
12SHA1 (patch-src_build-system_configure) = 90becd948f8aca87fd68081e689bdc8c49b419c6 
13SHA1 (patch-src_build-system_helpers_Makefile.run__with__lock.app) = d69b9e349646c970c3b296707f917defbe39cccd 12SHA1 (patch-src_build-system_helpers_Makefile.run__with__lock.app) = d69b9e349646c970c3b296707f917defbe39cccd
14SHA1 (patch-src_util_checksum_farmhash_farmhash.h) = c3ff60de9a9020d3b706c2bff37f6f4cde4e6b6b 13SHA1 (patch-src_util_checksum_farmhash_farmhash.h) = c3ff60de9a9020d3b706c2bff37f6f4cde4e6b6b
File Deleted: pkgsrc/biology/ncbi-blast+/patches/Attic/patch-src_build-system_cmake_cmake-cfg-unix.sh
File Deleted: pkgsrc/biology/ncbi-blast+/patches/Attic/patch-src_build-system_cmake_cmake-configure
File Added: pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_cmake_cmake-cfg-xcode.sh
$NetBSD: patch-src_build-system_cmake_cmake-cfg-xcode.sh,v 1.1 2021/06/11 13:47:40 bacon Exp $

# Portability

--- src/build-system/cmake/cmake-cfg-xcode.sh.orig	2021-06-10 11:54:05.800996703 +0000
+++ src/build-system/cmake/cmake-cfg-xcode.sh
@@ -218,7 +218,7 @@ CMAKE_ARGS="$CMAKE_ARGS -DBUILD_SHARED_L
 
 if [ -z "$BUILD_ROOT" ]; then
   BUILD_ROOT=CMake-${CC_NAME}${CC_VERSION}
-  if [ "$BUILD_SHARED_LIBS" == "ON" ]; then
+  if [ "$BUILD_SHARED_LIBS" = "ON" ]; then
     BUILD_ROOT="$BUILD_ROOT"-DLL
   fi
 fi
cvs diff -r1.1 -r1.2 pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_configure (expand / switch to unified diff)

--- pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_configure 2018/04/27 20:28:28 1.1
+++ pkgsrc/biology/ncbi-blast+/patches/patch-src_build-system_configure 2021/06/11 13:47:40 1.2
@@ -1,15 +1,15 @@ @@ -1,15 +1,15 @@
1$NetBSD: patch-src_build-system_configure,v 1.1 2018/04/27 20:28:28 bacon Exp $ 1$NetBSD: patch-src_build-system_configure,v 1.2 2021/06/11 13:47:40 bacon Exp $
2 2
3# Fix support for localstatedir 3# Avert missing --with-libiconv-prefix option
4 4
5--- src/build-system/configure.orig 2018-02-19 01:32:40 UTC 5--- src/build-system/configure.orig 2021-06-10 19:44:11.069762486 +0000
6+++ src/build-system/configure 6+++ src/build-system/configure
7@@ -1755,7 +1755,7 @@ for x_arg in "$@" ; do 7@@ -2015,7 +2015,7 @@ for x_arg in "$@" ; do
8 | --libdir=* | --includedir=* | --build=* | --host=* | --target=* \ 8 | --libdir=* | --includedir=* | --build=* | --host=* | --target=* \
9 | --mandir=* | --infodir=* | --docdir=* | --htmldir=* \ 9 | --mandir=* | --infodir=* | --docdir=* | --htmldir=* \
10 | --datadir=* | --sysconfdir=* | --localstatedir=* \ 10 | --datadir=* | --sysconfdir=* | --localstatedir=* \
11- | --with-runpath=* | --with-relative-runpath=* \ 11- | --with-runpath=* | --with-relative-runpath=* \
12+ | --with-runpath=* | --with-relative-runpath=* | --localstatedir=* \ 12+ | --with-runpath=* | --with-relative-runpath=* | --with-libiconv-prefix=* \
13 | --with-experimental=* | --with-extra-action=* | --with-build-root=* \ 13 | --with-experimental=* | --with-extra-action=* | --with-build-root=* \
14 | --with-fake-root=* | --with-build-root-sfx=* | --with-check=* \ 14 | --with-fake-root=* | --with-build-root-sfx=* | --with-check=* \
15 | --with-check-tools=* | --with-ftds=[0-9]* | --with-fastcgi=[0-9]* \ 15 | --with-check-tools=* | --with-ftds=[0-9]* | --with-fastcgi=[0-9]* \