Fri Sep 3 01:57:56 2021 UTC ()
biology/peak-classifier: Update to 0.1.1.21

Fix regression: Replace BL_BED_SET_STRAND() macro with
bl_bed_set_strand(), which performs sanity checks


(bacon)
diff -r1.2 -r1.3 pkgsrc/biology/peak-classifier/Makefile
diff -r1.2 -r1.3 pkgsrc/biology/peak-classifier/PLIST
diff -r1.2 -r1.3 pkgsrc/biology/peak-classifier/distinfo
cvs diff -r1.2 -r1.3 pkgsrc/biology/peak-classifier/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/peak-classifier/Makefile 2021/08/28 18:40:29 1.2
+++ pkgsrc/biology/peak-classifier/Makefile 2021/09/03 01:57:56 1.3
@@ -1,19 +1,19 @@ @@ -1,19 +1,19 @@
1# $NetBSD: Makefile,v 1.2 2021/08/28 18:40:29 bacon Exp $ 1# $NetBSD: Makefile,v 1.3 2021/09/03 01:57:56 bacon Exp $
2 2
3DISTNAME= peak-classifier-0.1.1.20 3DISTNAME= peak-classifier-0.1.1.21
4CATEGORIES= biology 4CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} 5MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
6GITHUB_TAG= fb47a5ccdf9df3a9c25db50fc658e0a0cbef9c36 6GITHUB_TAG= c1b21c252bc51278a85366fd36a67284718dbdbd
7 7
8MAINTAINER= bacon@NetBSD.org 8MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://github.com/auerlab/peak-classifier 9HOMEPAGE= https://github.com/auerlab/peak-classifier
10COMMENT= Classify ChIP/ATAC-Seq peaks based on features provided in a GFF 10COMMENT= Classify ChIP/ATAC-Seq peaks based on features provided in a GFF
11LICENSE= 2-clause-bsd 11LICENSE= 2-clause-bsd
12 12
13DEPENDS+= bedtools>=0:../../biology/bedtools 13DEPENDS+= bedtools>=0:../../biology/bedtools
14 14
15REPLACE_PYTHON= feature-view.py 15REPLACE_PYTHON= feature-view.py
16 16
17pre-build: 17pre-build:
18 cd ${WRKSRC} && make depend PREFIX=${PREFIX} 18 cd ${WRKSRC} && make depend PREFIX=${PREFIX}
19 19
cvs diff -r1.2 -r1.3 pkgsrc/biology/peak-classifier/PLIST (expand / switch to unified diff)

--- pkgsrc/biology/peak-classifier/PLIST 2021/08/28 18:40:29 1.2
+++ pkgsrc/biology/peak-classifier/PLIST 2021/09/03 01:57:56 1.3
@@ -1,10 +1,10 @@ @@ -1,10 +1,10 @@
1@comment $NetBSD: PLIST,v 1.2 2021/08/28 18:40:29 bacon Exp $ 1@comment $NetBSD: PLIST,v 1.3 2021/09/03 01:57:56 bacon Exp $
2bin/extract-genes 2bin/extract-genes
3bin/feature-view 3bin/feature-view
4bin/filter-overlaps 4bin/filter-overlaps
5bin/peak-classifier 5bin/peak-classifier
6libexec/extract-genes.awk 6libexec/extract-genes.awk
7man/man1/extract-genes.1 7man/man1/extract-genes.1
8man/man1/feature-view.1 8man/man1/feature-view.1
9man/man1/filter-overlaps.1 9man/man1/filter-overlaps.1
10man/man1/peak-classifier.1 10man/man1/peak-classifier.1
cvs diff -r1.2 -r1.3 pkgsrc/biology/peak-classifier/distinfo (expand / switch to unified diff)

--- pkgsrc/biology/peak-classifier/distinfo 2021/08/28 18:40:29 1.2
+++ pkgsrc/biology/peak-classifier/distinfo 2021/09/03 01:57:56 1.3
@@ -1,6 +1,6 @@ @@ -1,6 +1,6 @@
1$NetBSD: distinfo,v 1.2 2021/08/28 18:40:29 bacon Exp $ 1$NetBSD: distinfo,v 1.3 2021/09/03 01:57:56 bacon Exp $
2 2
3SHA1 (peak-classifier-0.1.1.20-fb47a5ccdf9df3a9c25db50fc658e0a0cbef9c36.tar.gz) = 360236da415c2f79940e6b525c236970af066b19 3SHA1 (peak-classifier-0.1.1.21-c1b21c252bc51278a85366fd36a67284718dbdbd.tar.gz) = 76db2e983d97016f804f615bde16f10043a22abc
4RMD160 (peak-classifier-0.1.1.20-fb47a5ccdf9df3a9c25db50fc658e0a0cbef9c36.tar.gz) = 6a71f72d9d2defa8c947899304914696437f90ee 4RMD160 (peak-classifier-0.1.1.21-c1b21c252bc51278a85366fd36a67284718dbdbd.tar.gz) = 7b12a6e8e13030e99fbee800090abb91cae6ec6c
5SHA512 (peak-classifier-0.1.1.20-fb47a5ccdf9df3a9c25db50fc658e0a0cbef9c36.tar.gz) = 86cb6314b3c56ac4972c8ec418d60ee24f7773ece7fe4c990701e2b26501a56f56e9c5c02747441d0ac486a771c9814a15915f45d36cadde6ff403cd03fe8d16 5SHA512 (peak-classifier-0.1.1.21-c1b21c252bc51278a85366fd36a67284718dbdbd.tar.gz) = 4a46edfdd03424b4ac85698330a565941a8f072b864b29ef36336ea0e25306aa1fb5996041c79efe1b5fd13adfec661cca6effbcb87486dc0272e8215f8f28bd
6Size (peak-classifier-0.1.1.20-fb47a5ccdf9df3a9c25db50fc658e0a0cbef9c36.tar.gz) = 86572 bytes 6Size (peak-classifier-0.1.1.21-c1b21c252bc51278a85366fd36a67284718dbdbd.tar.gz) = 86608 bytes