Tue Mar 15 21:10:59 2022 UTC ()
biology/biolibc-tools: Update to 0.1.2

New fastx-stats and ensembl2gene subcommands
Minor updates for biolibc 0.2.2 API changes
Minor bug fixes and ennancements


(bacon)
diff -r1.2 -r1.3 pkgsrc/biology/biolibc-tools/Makefile
diff -r1.2 -r1.3 pkgsrc/biology/biolibc-tools/PLIST
diff -r1.4 -r1.5 pkgsrc/biology/biolibc-tools/distinfo
cvs diff -r1.2 -r1.3 pkgsrc/biology/biolibc-tools/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/biolibc-tools/Makefile 2021/12/14 19:05:39 1.2
+++ pkgsrc/biology/biolibc-tools/Makefile 2022/03/15 21:10:59 1.3
@@ -1,16 +1,16 @@ @@ -1,16 +1,16 @@
1# $NetBSD: Makefile,v 1.2 2021/12/14 19:05:39 bacon Exp $ 1# $NetBSD: Makefile,v 1.3 2022/03/15 21:10:59 bacon Exp $
2 2
3DISTNAME= biolibc-tools-0.1.1 3DISTNAME= biolibc-tools-0.1.2
4CATEGORIES= biology 4CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/} 5MASTER_SITES= ${MASTER_SITE_GITHUB:=auerlab/}
6 6
7MAINTAINER= bacon@NetBSD.org 7MAINTAINER= bacon@NetBSD.org
8HOMEPAGE= https://github.com/auerlab/biolibc-tools 8HOMEPAGE= https://github.com/auerlab/biolibc-tools
9COMMENT= High-performance bioinformatics tools based on biolibc 9COMMENT= High-performance bioinformatics tools based on biolibc
10LICENSE= 2-clause-bsd 10LICENSE= 2-clause-bsd
11 11
12BUILD_TARGET= depend all 12BUILD_TARGET= depend all
13MAKE_ENV+= VERSION=${PKGVERSION} 13MAKE_ENV+= VERSION=${PKGVERSION}
14INSTALL_TARGET= install-strip 14INSTALL_TARGET= install-strip
15 15
16pre-build: 16pre-build:
cvs diff -r1.2 -r1.3 pkgsrc/biology/biolibc-tools/PLIST (expand / switch to unified diff)

--- pkgsrc/biology/biolibc-tools/PLIST 2021/12/14 19:05:39 1.2
+++ pkgsrc/biology/biolibc-tools/PLIST 2022/03/15 21:10:59 1.3
@@ -1,22 +1,26 @@ @@ -1,22 +1,26 @@
1@comment $NetBSD: PLIST,v 1.2 2021/12/14 19:05:39 bacon Exp $ 1@comment $NetBSD: PLIST,v 1.3 2022/03/15 21:10:59 bacon Exp $
2bin/blt 2bin/blt
3libexec/biolibc-tools/chrom-lens 3libexec/biolibc-tools/chrom-lens
 4libexec/biolibc-tools/ensemblid2gene
4libexec/biolibc-tools/extract-seq 5libexec/biolibc-tools/extract-seq
5libexec/biolibc-tools/fasta2seq 6libexec/biolibc-tools/fasta2seq
6libexec/biolibc-tools/fastq-derep.sh 7libexec/biolibc-tools/fastq-derep.sh
7libexec/biolibc-tools/fastx-derep 8libexec/biolibc-tools/fastx-derep
 9libexec/biolibc-tools/fastx-stats
8libexec/biolibc-tools/fastx2tsv 10libexec/biolibc-tools/fastx2tsv
9libexec/biolibc-tools/find-orfs 11libexec/biolibc-tools/find-orfs
10libexec/biolibc-tools/gff2bed 12libexec/biolibc-tools/gff2bed
11libexec/biolibc-tools/uniq-seqs.awk 13libexec/biolibc-tools/uniq-seqs.awk
12libexec/biolibc-tools/vcf-search 14libexec/biolibc-tools/vcf-search
13man/man1/blt-chrom-lens.1 15man/man1/blt-chrom-lens.1
 16man/man1/blt-ensemblid2gene.1
14man/man1/blt-extract-seq.1 17man/man1/blt-extract-seq.1
15man/man1/blt-fasta2seq.1 18man/man1/blt-fasta2seq.1
16man/man1/blt-fastq-derep.sh.1 19man/man1/blt-fastq-derep.sh.1
17man/man1/blt-fastx-derep.1 20man/man1/blt-fastx-derep.1
 21man/man1/blt-fastx-stats.1
18man/man1/blt-fastx2tsv.1 22man/man1/blt-fastx2tsv.1
19man/man1/blt-find-orfs.1 23man/man1/blt-find-orfs.1
20man/man1/blt-gff2bed.1 24man/man1/blt-gff2bed.1
21man/man1/blt-vcf-search.1 25man/man1/blt-vcf-search.1
22man/man1/blt.1 26man/man1/blt.1
cvs diff -r1.4 -r1.5 pkgsrc/biology/biolibc-tools/distinfo (expand / switch to unified diff)

--- pkgsrc/biology/biolibc-tools/distinfo 2021/12/14 19:05:39 1.4
+++ pkgsrc/biology/biolibc-tools/distinfo 2022/03/15 21:10:59 1.5
@@ -1,5 +1,5 @@ @@ -1,5 +1,5 @@
1$NetBSD: distinfo,v 1.4 2021/12/14 19:05:39 bacon Exp $ 1$NetBSD: distinfo,v 1.5 2022/03/15 21:10:59 bacon Exp $
2 2
3BLAKE2s (biolibc-tools-0.1.1.tar.gz) = 9b8d4999c641b0b5aaaef88102d59b4972b5f1a6b6782546e274128c57f19c98 3BLAKE2s (biolibc-tools-0.1.2.tar.gz) = a97bd90a51e11c136d78a403d34be4588a2364844c8ae1f2d8daa68db175d116
4SHA512 (biolibc-tools-0.1.1.tar.gz) = cfd2e7bacef0093a87c28dd4fbab8ee7007e874ee638816c75f6df92dd436d13a1fb6d5faa8e97491711bece19b8bf7d3f5ed0301c732d6c86f4255872884ff6 4SHA512 (biolibc-tools-0.1.2.tar.gz) = c6d0686e6a2be32f35c84d97bf489cd2a7a08416caa11b1defdb818a9aaed4e6c6db0482206bb31cfa1edf7d99f972d4990369aed38833515efde9bf89bbbd27
5Size (biolibc-tools-0.1.1.tar.gz) = 21700 bytes 5Size (biolibc-tools-0.1.2.tar.gz) = 24610 bytes