Sun Dec 11 21:25:48 2022 UTC ()
biology/fastq-trim: Update to 0.1.2

Minor enhancements, fixes for SunOS

Changes:    https://github.com/auerlab/fastq-trim/releases


(bacon)
diff -r1.1 -r1.2 pkgsrc/biology/fastq-trim/Makefile
diff -r1.1 -r1.2 pkgsrc/biology/fastq-trim/PLIST
diff -r1.1 -r1.2 pkgsrc/biology/fastq-trim/distinfo
cvs diff -r1.1 -r1.2 pkgsrc/biology/fastq-trim/Makefile (switch to unified diff)

--- pkgsrc/biology/fastq-trim/Makefile 2022/11/06 22:49:37 1.1
+++ pkgsrc/biology/fastq-trim/Makefile 2022/12/11 21:25:47 1.2
@@ -1,21 +1,20 @@ @@ -1,21 +1,20 @@
1# $NetBSD: Makefile,v 1.1 2022/11/06 22:49:37 bacon Exp $ 1# $NetBSD: Makefile,v 1.2 2022/12/11 21:25:47 bacon Exp $
2 2
3DISTNAME= fastq-trim-0.1.1.16 3DISTNAME= fastq-trim-0.1.2
4CATEGORIES= biology 4CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=outpaddling/} 5MASTER_SITES= ${MASTER_SITE_GITHUB:=outpaddling/}
6GITHUB_TAG= 58a016f250a9b785bfed574ce471ec7e23cdaa4a 
7 6
8MAINTAINER= bacon@NetBSD.org 7MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://github.com/outpaddling/Fastq-trim 8HOMEPAGE= https://github.com/outpaddling/Fastq-trim
10COMMENT= Lightening fast sequence read trimmer 9COMMENT= Lightening fast sequence read trimmer
11LICENSE= 2-clause-bsd 10LICENSE= 2-clause-bsd
12 11
13MAKE_ENV= VERSION=${PKGVERSION} 12MAKE_ENV= VERSION=${PKGVERSION}
14 13
15LDFLAGS.SunOS= -lresolv 14LDFLAGS.SunOS= -lresolv
16 15
17pre-build: 16pre-build:
18 (cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend) 17 (cd ${WRKSRC} && ${MAKE} PREFIX=${PREFIX} depend)
19 18
20.include "../../biology/biolibc/buildlink3.mk" 19.include "../../biology/biolibc/buildlink3.mk"
21.include "../../mk/bsd.pkg.mk" 20.include "../../mk/bsd.pkg.mk"
cvs diff -r1.1 -r1.2 pkgsrc/biology/fastq-trim/PLIST (switch to unified diff)

--- pkgsrc/biology/fastq-trim/PLIST 2022/11/06 22:49:37 1.1
+++ pkgsrc/biology/fastq-trim/PLIST 2022/12/11 21:25:47 1.2
@@ -1,76 +1,76 @@ @@ -1,76 +1,76 @@
1@comment $NetBSD: PLIST,v 1.1 2022/11/06 22:49:37 bacon Exp $ 1@comment $NetBSD: PLIST,v 1.2 2022/12/11 21:25:47 bacon Exp $
2bin/fastq-scum 2bin/fastq-scum
3bin/fastq-trim 3bin/fastq-trim
4include/fastq-trim-accessors.h 4include/fastq-trim-accessors.h
5include/fastq-trim-mutators.h 5include/fastq-trim-mutators.h
6include/fastq-trim-rvs.h 6include/fastq-trim-rvs.h
7include/fastq-trim.h 7include/fastq-trim.h
8lib/libfastq-trim.a 8lib/libfastq-trim.a
9man/man1/fastq-scum.1 9man/man1/fastq-scum.1
10man/man1/fastq-trim.1 10man/man1/fastq-trim.1
11man/man3/FASTQ_TRIM_ADAPTER1.3 11man/man3/FASTQ_TRIM_ADAPTER1.3
12man/man3/FASTQ_TRIM_ADAPTER1_AE.3 12man/man3/FASTQ_TRIM_ADAPTER1_AE.3
13man/man3/FASTQ_TRIM_ADAPTER2.3 13man/man3/FASTQ_TRIM_ADAPTER2.3
14man/man3/FASTQ_TRIM_ADAPTER2_AE.3 14man/man3/FASTQ_TRIM_ADAPTER2_AE.3
15man/man3/FASTQ_TRIM_ADAPTER_MATCH_FUNCTION.3 15man/man3/FASTQ_TRIM_ADAPTER_MATCH_FUNCTION.3
16man/man3/FASTQ_TRIM_INFILE1.3 16man/man3/FASTQ_TRIM_INFILE1.3
17man/man3/FASTQ_TRIM_INFILE1_AE.3 17man/man3/FASTQ_TRIM_INFILE1_AE.3
18man/man3/FASTQ_TRIM_INFILE2.3 18man/man3/FASTQ_TRIM_INFILE2.3
19man/man3/FASTQ_TRIM_INFILE2_AE.3 19man/man3/FASTQ_TRIM_INFILE2_AE.3
20man/man3/FASTQ_TRIM_INSTREAM1.3 20man/man3/FASTQ_TRIM_INSTREAM1.3
21man/man3/FASTQ_TRIM_INSTREAM1_AE.3 21man/man3/FASTQ_TRIM_INSTREAM1_AE.3
22man/man3/FASTQ_TRIM_INSTREAM2.3 22man/man3/FASTQ_TRIM_INSTREAM2.3
23man/man3/FASTQ_TRIM_INSTREAM2_AE.3 23man/man3/FASTQ_TRIM_INSTREAM2_AE.3
24man/man3/FASTQ_TRIM_MAX_MISMATCH_PERCENT.3 24man/man3/FASTQ_TRIM_MAX_MISMATCH_PERCENT.3
25man/man3/FASTQ_TRIM_MIN_LENGTH.3 25man/man3/FASTQ_TRIM_MIN_LENGTH.3
26man/man3/FASTQ_TRIM_MIN_MATCH.3 26man/man3/FASTQ_TRIM_MIN_MATCH.3
27man/man3/FASTQ_TRIM_MIN_QUAL.3 27man/man3/FASTQ_TRIM_MIN_QUAL.3
28man/man3/FASTQ_TRIM_OUTFILE1.3 28man/man3/FASTQ_TRIM_OUTFILE1.3
29man/man3/FASTQ_TRIM_OUTFILE1_AE.3 29man/man3/FASTQ_TRIM_OUTFILE1_AE.3
30man/man3/FASTQ_TRIM_OUTFILE2.3 30man/man3/FASTQ_TRIM_OUTFILE2.3
31man/man3/FASTQ_TRIM_OUTFILE2_AE.3 31man/man3/FASTQ_TRIM_OUTFILE2_AE.3
32man/man3/FASTQ_TRIM_OUTSTREAM1.3 32man/man3/FASTQ_TRIM_OUTSTREAM1.3
33man/man3/FASTQ_TRIM_OUTSTREAM1_AE.3 33man/man3/FASTQ_TRIM_OUTSTREAM1_AE.3
34man/man3/FASTQ_TRIM_OUTSTREAM2.3 34man/man3/FASTQ_TRIM_OUTSTREAM2.3
35man/man3/FASTQ_TRIM_OUTSTREAM2_AE.3 35man/man3/FASTQ_TRIM_OUTSTREAM2_AE.3
36man/man3/FASTQ_TRIM_PHRED_BASE.3 36man/man3/FASTQ_TRIM_PHRED_BASE.3
37man/man3/FASTQ_TRIM_POLYA_MIN_LEN.3 37man/man3/FASTQ_TRIM_POLYA_MIN_LEN.3
38man/man3/FASTQ_TRIM_VERBOSE.3 38man/man3/FASTQ_TRIM_VERBOSE.3
39man/man3/fastq_trim_set_adapter1.3 39man/man3/fastq_trim_set_adapter1.3
40man/man3/fastq_trim_set_adapter1_ae.3 40man/man3/fastq_trim_set_adapter1_ae.3
41man/man3/fastq_trim_set_adapter1_cpy.3 41man/man3/fastq_trim_set_adapter1_cpy.3
42man/man3/fastq_trim_set_adapter2.3 42man/man3/fastq_trim_set_adapter2.3
43man/man3/fastq_trim_set_adapter2_ae.3 43man/man3/fastq_trim_set_adapter2_ae.3
44man/man3/fastq_trim_set_adapter2_cpy.3 44man/man3/fastq_trim_set_adapter2_cpy.3
45man/man3/fastq_trim_set_adapter_match_function.3 45man/man3/fastq_trim_set_adapter_match_function.3
46man/man3/fastq_trim_set_infile1.3 46man/man3/fastq_trim_set_infile1.3
47man/man3/fastq_trim_set_infile1_ae.3 47man/man3/fastq_trim_set_infile1_ae.3
48man/man3/fastq_trim_set_infile1_cpy.3 48man/man3/fastq_trim_set_infile1_cpy.3
49man/man3/fastq_trim_set_infile2.3 49man/man3/fastq_trim_set_infile2.3
50man/man3/fastq_trim_set_infile2_ae.3 50man/man3/fastq_trim_set_infile2_ae.3
51man/man3/fastq_trim_set_infile2_cpy.3 51man/man3/fastq_trim_set_infile2_cpy.3
52man/man3/fastq_trim_set_instream1.3 52man/man3/fastq_trim_set_instream1.3
53man/man3/fastq_trim_set_instream1_ae.3 53man/man3/fastq_trim_set_instream1_ae.3
54man/man3/fastq_trim_set_instream1_cpy.3 54man/man3/fastq_trim_set_instream1_cpy.3
55man/man3/fastq_trim_set_instream2.3 55man/man3/fastq_trim_set_instream2.3
56man/man3/fastq_trim_set_instream2_ae.3 56man/man3/fastq_trim_set_instream2_ae.3
57man/man3/fastq_trim_set_instream2_cpy.3 57man/man3/fastq_trim_set_instream2_cpy.3
58man/man3/fastq_trim_set_max_mismatch_percent.3 58man/man3/fastq_trim_set_max_mismatch_percent.3
59man/man3/fastq_trim_set_min_length.3 59man/man3/fastq_trim_set_min_length.3
60man/man3/fastq_trim_set_min_match.3 60man/man3/fastq_trim_set_min_match.3
61man/man3/fastq_trim_set_min_qual.3 61man/man3/fastq_trim_set_min_qual.3
62man/man3/fastq_trim_set_outfile1.3 62man/man3/fastq_trim_set_outfile1.3
63man/man3/fastq_trim_set_outfile1_ae.3 63man/man3/fastq_trim_set_outfile1_ae.3
64man/man3/fastq_trim_set_outfile1_cpy.3 64man/man3/fastq_trim_set_outfile1_cpy.3
65man/man3/fastq_trim_set_outfile2.3 65man/man3/fastq_trim_set_outfile2.3
66man/man3/fastq_trim_set_outfile2_ae.3 66man/man3/fastq_trim_set_outfile2_ae.3
67man/man3/fastq_trim_set_outfile2_cpy.3 67man/man3/fastq_trim_set_outfile2_cpy.3
68man/man3/fastq_trim_set_outstream1.3 68man/man3/fastq_trim_set_outstream1.3
69man/man3/fastq_trim_set_outstream1_ae.3 69man/man3/fastq_trim_set_outstream1_ae.3
70man/man3/fastq_trim_set_outstream1_cpy.3 70man/man3/fastq_trim_set_outstream1_cpy.3
71man/man3/fastq_trim_set_outstream2.3 71man/man3/fastq_trim_set_outstream2.3
72man/man3/fastq_trim_set_outstream2_ae.3 72man/man3/fastq_trim_set_outstream2_ae.3
73man/man3/fastq_trim_set_outstream2_cpy.3 73man/man3/fastq_trim_set_outstream2_cpy.3
74man/man3/fastq_trim_set_phred_base.3 74man/man3/fastq_trim_set_phred_base.3
75man/man3/fastq_trim_set_polya_min_len.3 75man/man3/fastq_trim_set_polya_min_len.3
76man/man3/fastq_trim_set_verbose.3 76man/man3/fastq_trim_set_verbose.3
cvs diff -r1.1 -r1.2 pkgsrc/biology/fastq-trim/distinfo (switch to unified diff)

--- pkgsrc/biology/fastq-trim/distinfo 2022/11/06 22:49:37 1.1
+++ pkgsrc/biology/fastq-trim/distinfo 2022/12/11 21:25:47 1.2
@@ -1,5 +1,5 @@ @@ -1,5 +1,5 @@
1$NetBSD: distinfo,v 1.1 2022/11/06 22:49:37 bacon Exp $ 1$NetBSD: distinfo,v 1.2 2022/12/11 21:25:47 bacon Exp $
2 2
3BLAKE2s (fastq-trim-0.1.1.16-58a016f250a9b785bfed574ce471ec7e23cdaa4a.tar.gz) = a2383eed63d5bb75dbb8c1ca2f6a5f08f737cb6243772e87d0477938cc3440f7 3BLAKE2s (fastq-trim-0.1.2.tar.gz) = d86b5a4a59c9b3e82b4a303c272e9818a9b54532e64d7e42e4c89dea34591fc4
4SHA512 (fastq-trim-0.1.1.16-58a016f250a9b785bfed574ce471ec7e23cdaa4a.tar.gz) = 26d0bf350bac6b3bbfb98d35e6587a1b58a9f353f376f676d97a9c6ff36e41ea05a906eeee2089834f05e26121b7014fd93ef5ba732eb8f8d977edfacaa01225 4SHA512 (fastq-trim-0.1.2.tar.gz) = e27852410cc0af06e30d06e1266be6639ff2f63cd35c61801817b37241a6feb41ef5efc5e8668333a19d575a7c018a85113b3e6ec618e2fcbdb2572c05be6148
5Size (fastq-trim-0.1.1.16-58a016f250a9b785bfed574ce471ec7e23cdaa4a.tar.gz) = 29819 bytes 5Size (fastq-trim-0.1.2.tar.gz) = 29796 bytes