Mon Jun 26 17:21:15 2023 UTC ()
bedtools: SunOS needs libsocket.


(jperkin)
diff -r1.3 -r1.4 pkgsrc/biology/bedtools/Makefile
cvs diff -r1.3 -r1.4 pkgsrc/biology/bedtools/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/bedtools/Makefile 2022/06/30 11:18:04 1.3
+++ pkgsrc/biology/bedtools/Makefile 2023/06/26 17:21:15 1.4
@@ -1,32 +1,34 @@ @@ -1,32 +1,34 @@
1# $NetBSD: Makefile,v 1.3 2022/06/30 11:18:04 nia Exp $ 1# $NetBSD: Makefile,v 1.4 2023/06/26 17:21:15 jperkin Exp $
2 2
3DISTNAME= bedtools-2.30.0 3DISTNAME= bedtools-2.30.0
4PKGREVISION= 1 4PKGREVISION= 1
5CATEGORIES= biology 5CATEGORIES= biology
6MASTER_SITES= ${MASTER_SITE_GITHUB:=arq5x/} 6MASTER_SITES= ${MASTER_SITE_GITHUB:=arq5x/}
7GITHUB_PROJECT= bedtools2 7GITHUB_PROJECT= bedtools2
8GITHUB_TAG= v${PKGVERSION_NOREV} 8GITHUB_TAG= v${PKGVERSION_NOREV}
9 9
10MAINTAINER= bacon@NetBSD.org 10MAINTAINER= bacon@NetBSD.org
11HOMEPAGE= https://bedtools.readthedocs.io/en/latest/ 11HOMEPAGE= https://bedtools.readthedocs.io/en/latest/
12COMMENT= Swiss army knife for genome arithmetic 12COMMENT= Swiss army knife for genome arithmetic
13LICENSE= mit 13LICENSE= mit
14 14
15USE_LANGUAGES= c c++ 15USE_LANGUAGES= c c++
16USE_TOOLS+= bash:test gmake 16USE_TOOLS+= bash:test gmake
17REPLACE_SH+= scripts/vcfsort.sh 17REPLACE_SH+= scripts/vcfsort.sh
18REPLACE_PYTHON= scripts/makeBashScripts.py 18REPLACE_PYTHON= scripts/makeBashScripts.py
19 19
 20LDFLAGS.SunOS+= -lsocket
 21
20SUBST_CLASSES+= pybin 22SUBST_CLASSES+= pybin
21SUBST_STAGE.pybin= pre-configure 23SUBST_STAGE.pybin= pre-configure
22SUBST_SED.pybin= -e 's|python|${PYTHONBIN}|g' 24SUBST_SED.pybin= -e 's|python|${PYTHONBIN}|g'
23SUBST_FILES.pybin= Makefile 25SUBST_FILES.pybin= Makefile
24 26
25do-test: 27do-test:
26 cd ${WRKSRC}/test && bash test.sh 28 cd ${WRKSRC}/test && bash test.sh
27 29
28.include "../../devel/zlib/buildlink3.mk" 30.include "../../devel/zlib/buildlink3.mk"
29.include "../../archivers/bzip2/buildlink3.mk" 31.include "../../archivers/bzip2/buildlink3.mk"
30.include "../../archivers/xz/buildlink3.mk" 32.include "../../archivers/xz/buildlink3.mk"
31.include "../../lang/python/application.mk" 33.include "../../lang/python/application.mk"
32.include "../../mk/bsd.pkg.mk" 34.include "../../mk/bsd.pkg.mk"