Sun Jul 9 16:20:58 2023 UTC ()
biology/vsearch: Update to 2.23.0

Numerous minor fixes and enhancements
Changes: https://github.com/torognes/vsearch/releases


(bacon)
diff -r1.4 -r1.5 pkgsrc/biology/vsearch/Makefile
diff -r1.3 -r1.4 pkgsrc/biology/vsearch/PLIST
diff -r1.6 -r1.7 pkgsrc/biology/vsearch/distinfo
diff -r1.1 -r0 pkgsrc/biology/vsearch/patch-src_Makefile.am
diff -r1.3 -r0 pkgsrc/biology/vsearch/patches/patch-configure.ac
diff -r1.3 -r0 pkgsrc/biology/vsearch/patches/patch-src_Makefile.am
cvs diff -r1.4 -r1.5 pkgsrc/biology/vsearch/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/Makefile 2021/12/17 19:20:44 1.4
+++ pkgsrc/biology/vsearch/Makefile 2023/07/09 16:20:58 1.5
@@ -1,28 +1,26 @@ @@ -1,28 +1,26 @@
1# $NetBSD: Makefile,v 1.4 2021/12/17 19:20:44 bacon Exp $ 1# $NetBSD: Makefile,v 1.5 2023/07/09 16:20:58 bacon Exp $
2 2
3DISTNAME= vsearch-2.18.0 3DISTNAME= vsearch-2.23.0
4CATEGORIES= biology 4CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=torognes/} 5MASTER_SITES= ${MASTER_SITE_GITHUB:=torognes/}
6GITHUB_TAG= v${PKGVERSION_NOREV} 6GITHUB_TAG= v${PKGVERSION_NOREV}
7 7
8MAINTAINER= bacon@NetBSD.org 8MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://github.com/torognes/vsearch 9HOMEPAGE= https://github.com/torognes/vsearch
10COMMENT= Versatile open-source tool for metagenomics 10COMMENT= Versatile open-source tool for metagenomics
11LICENSE= gnu-gpl-v3 11LICENSE= gnu-gpl-v3
12 12
13# Works on powerpc64, but only in little endian mode 13# Works on powerpc64, but only in little endian mode
14ONLY_FOR_PLATFORM= *-*-aarch64* *-*-powerpc64 *-*-x86_64 14ONLY_FOR_PLATFORM= *-*-aarch64* *-*-powerpc64 *-*-x86_64
15 15
16USE_LANGUAGES= c c++ 16USE_LANGUAGES= c c++
17USE_TOOLS+= autoconf automake autoreconf gmake 17USE_TOOLS+= autoconf automake autoreconf gmake
18GNU_CONFIGURE= yes 18GNU_CONFIGURE= yes
19CONFIGURE_ARGS+= --disable-pdfman 19CONFIGURE_ARGS+= --disable-pdfman
20 20
21CXXFLAGS+= -std=c++11 
22 
23pre-configure: 21pre-configure:
24 cd ${WRKSRC} && autoreconf -fi 22 cd ${WRKSRC} && autoreconf -fi
25 23
26.include "../../devel/zlib/buildlink3.mk" 24.include "../../devel/zlib/buildlink3.mk"
27.include "../../archivers/bzip2/buildlink3.mk" 25.include "../../archivers/bzip2/buildlink3.mk"
28.include "../../mk/bsd.pkg.mk" 26.include "../../mk/bsd.pkg.mk"
cvs diff -r1.3 -r1.4 pkgsrc/biology/vsearch/PLIST (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/PLIST 2021/12/17 19:20:44 1.3
+++ pkgsrc/biology/vsearch/PLIST 2023/07/09 16:20:58 1.4
@@ -1,3 +1,3 @@ @@ -1,3 +1,3 @@
1@comment $NetBSD: PLIST,v 1.3 2021/12/17 19:20:44 bacon Exp $ 1@comment $NetBSD: PLIST,v 1.4 2023/07/09 16:20:58 bacon Exp $
2bin/vsearch 2bin/vsearch
3man/man1/vsearch.1 3man/man1/vsearch.1
cvs diff -r1.6 -r1.7 pkgsrc/biology/vsearch/distinfo (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/distinfo 2021/12/17 19:20:44 1.6
+++ pkgsrc/biology/vsearch/distinfo 2023/07/09 16:20:58 1.7
@@ -1,7 +1,5 @@ @@ -1,7 +1,5 @@
1$NetBSD: distinfo,v 1.6 2021/12/17 19:20:44 bacon Exp $ 1$NetBSD: distinfo,v 1.7 2023/07/09 16:20:58 bacon Exp $
2 2
3BLAKE2s (vsearch-2.18.0.tar.gz) = 48ca99858b157da943eca273d4a4f25e94aa7c64ecf4c7373821c30cdfbc38c5 3BLAKE2s (vsearch-2.23.0.tar.gz) = fc692c05824caa1eb52187bfd38663cb0a1d67070b8b070ccc4a455e96737b38
4SHA512 (vsearch-2.18.0.tar.gz) = 9da21685fe64743ccf43f209bdd5b586c8f7faaae9f1a204634b713d7ba8a86478f31b24bdda7820fba97318d4408c803a6b3eed1e37189907fbd5882183d781 4SHA512 (vsearch-2.23.0.tar.gz) = cb3fffaa01d765f9d173cce45c240ef37d49fc59fb1a893e49fe16d29ce3b150f161f9ccd05e6491a6ecc6e0574bb774b4aaccb563dab1dc087b2d713c158a22
5Size (vsearch-2.18.0.tar.gz) = 252014 bytes 5Size (vsearch-2.23.0.tar.gz) = 266534 bytes
6SHA1 (patch-configure.ac) = 23aa28454d5f58222b10302cbd01ceaf0e7dca3f 
7SHA1 (patch-src_Makefile.am) = fb76ec48d5292aaa276a0b6105e19ccc0abb03df 
File Deleted: pkgsrc/biology/vsearch/Attic/patch-src_Makefile.am
File Deleted: pkgsrc/biology/vsearch/patches/Attic/patch-configure.ac
File Deleted: pkgsrc/biology/vsearch/patches/Attic/patch-src_Makefile.am