| @@ -1,90 +1,91 @@ | | | @@ -1,90 +1,91 @@ |
1 | # $NetBSD: Makefile,v 1.89 2023/06/14 21:28:54 bacon Exp $ | | 1 | # $NetBSD: Makefile,v 1.90 2023/07/22 13:19:17 bacon Exp $ |
2 | # | | 2 | # |
3 | | | 3 | |
4 | COMMENT= Software for the biological sciences | | 4 | COMMENT= Software for the biological sciences |
5 | | | 5 | |
6 | SUBDIR+= R-popbio | | 6 | SUBDIR+= R-popbio |
7 | SUBDIR+= ad2vcf | | 7 | SUBDIR+= ad2vcf |
8 | SUBDIR+= arka | | 8 | SUBDIR+= arka |
9 | SUBDIR+= atac-seq | | 9 | SUBDIR+= atac-seq |
10 | SUBDIR+= azara | | 10 | SUBDIR+= azara |
11 | SUBDIR+= balance-tui | | 11 | SUBDIR+= balance-tui |
12 | SUBDIR+= bcftools | | 12 | SUBDIR+= bcftools |
13 | SUBDIR+= beagle | | 13 | SUBDIR+= beagle |
14 | SUBDIR+= bedtools | | 14 | SUBDIR+= bedtools |
15 | SUBDIR+= biolibc | | 15 | SUBDIR+= biolibc |
16 | SUBDIR+= biolibc-tools | | 16 | SUBDIR+= biolibc-tools |
17 | SUBDIR+= bioperl | | 17 | SUBDIR+= bioperl |
18 | SUBDIR+= bodr | | 18 | SUBDIR+= bodr |
19 | SUBDIR+= bowtie2 | | 19 | SUBDIR+= bowtie2 |
20 | SUBDIR+= bwa | | 20 | SUBDIR+= bwa |
21 | SUBDIR+= canu | | 21 | SUBDIR+= canu |
22 | SUBDIR+= cdhit | | 22 | SUBDIR+= cdhit |
23 | SUBDIR+= chemical-mime-data | | 23 | SUBDIR+= chemical-mime-data |
24 | SUBDIR+= chemtool | | 24 | SUBDIR+= chemtool |
25 | SUBDIR+= chip-seq | | 25 | SUBDIR+= chip-seq |
26 | SUBDIR+= clustalw | | 26 | SUBDIR+= clustalw |
27 | SUBDIR+= coalesce | | 27 | SUBDIR+= coalesce |
28 | SUBDIR+= coordgenlibs | | 28 | SUBDIR+= coordgenlibs |
29 | SUBDIR+= fasda | | 29 | SUBDIR+= fasda |
30 | SUBDIR+= fastDNAml | | 30 | SUBDIR+= fastDNAml |
31 | SUBDIR+= fastp | | 31 | SUBDIR+= fastp |
32 | SUBDIR+= fastq-trim | | 32 | SUBDIR+= fastq-trim |
33 | SUBDIR+= fastqc | | 33 | SUBDIR+= fastqc |
34 | SUBDIR+= fastx-toolkit | | 34 | SUBDIR+= fastx-toolkit |
35 | SUBDIR+= filter-fastq | | 35 | SUBDIR+= filter-fastq |
36 | SUBDIR+= fluctuate | | 36 | SUBDIR+= fluctuate |
37 | SUBDIR+= gabedit | | 37 | SUBDIR+= gabedit |
38 | SUBDIR+= generand | | 38 | SUBDIR+= generand |
39 | SUBDIR+= genesplicer | | 39 | SUBDIR+= genesplicer |
40 | SUBDIR+= gffread | | 40 | SUBDIR+= gffread |
41 | SUBDIR+= glimmer | | 41 | SUBDIR+= glimmer |
42 | SUBDIR+= gnome-chemistry-utils | | 42 | SUBDIR+= gnome-chemistry-utils |
43 | SUBDIR+= gp | | 43 | SUBDIR+= gp |
44 | SUBDIR+= gromacs | | 44 | SUBDIR+= gromacs |
45 | SUBDIR+= hisat2 | | 45 | SUBDIR+= hisat2 |
46 | SUBDIR+= hmmer | | 46 | SUBDIR+= hmmer |
47 | SUBDIR+= htslib | | 47 | SUBDIR+= htslib |
48 | SUBDIR+= igv | | 48 | SUBDIR+= igv |
49 | SUBDIR+= kallisto | | 49 | SUBDIR+= kallisto |
50 | SUBDIR+= lucy | | 50 | SUBDIR+= lucy |
51 | SUBDIR+= maeparser | | 51 | SUBDIR+= maeparser |
52 | SUBDIR+= miniasm | | 52 | SUBDIR+= miniasm |
53 | SUBDIR+= minimap2 | | 53 | SUBDIR+= minimap2 |
54 | SUBDIR+= molsketch | | 54 | SUBDIR+= molsketch |
55 | SUBDIR+= mopac | | 55 | SUBDIR+= mopac |
56 | SUBDIR+= mpqc | | 56 | SUBDIR+= mpqc |
57 | SUBDIR+= mummer | | 57 | SUBDIR+= mummer |
58 | SUBDIR+= ncbi-blast+ | | 58 | SUBDIR+= ncbi-blast+ |
59 | SUBDIR+= nut | | 59 | SUBDIR+= nut |
60 | SUBDIR+= openbabel | | 60 | SUBDIR+= openbabel |
61 | SUBDIR+= p5-Bio-ASN1-EntrezGene | | 61 | SUBDIR+= p5-Bio-ASN1-EntrezGene |
62 | SUBDIR+= pdbalign | | 62 | SUBDIR+= pdbalign |
63 | SUBDIR+= peak-classifier | | 63 | SUBDIR+= peak-classifier |
64 | SUBDIR+= phylip | | 64 | SUBDIR+= phylip |
65 | SUBDIR+= plink | | 65 | SUBDIR+= plink |
66 | SUBDIR+= plinkseq | | 66 | SUBDIR+= plinkseq |
67 | SUBDIR+= primer3 | | 67 | SUBDIR+= primer3 |
68 | SUBDIR+= profit | | 68 | SUBDIR+= profit |
69 | SUBDIR+= puzzle | | 69 | SUBDIR+= puzzle |
70 | SUBDIR+= py-biopython | | 70 | SUBDIR+= py-biopython |
71 | SUBDIR+= py-cutadapt | | 71 | SUBDIR+= py-cutadapt |
72 | SUBDIR+= py-dnaio | | 72 | SUBDIR+= py-dnaio |
73 | SUBDIR+= py-macs2 | | 73 | SUBDIR+= py-macs2 |
| | | 74 | SUBDIR+= py-multiqc |
74 | SUBDIR+= py-pydicom | | 75 | SUBDIR+= py-pydicom |
75 | SUBDIR+= racon | | 76 | SUBDIR+= racon |
76 | SUBDIR+= rasmol | | 77 | SUBDIR+= rasmol |
77 | SUBDIR+= rna-seq | | 78 | SUBDIR+= rna-seq |
78 | SUBDIR+= samtools | | 79 | SUBDIR+= samtools |
79 | SUBDIR+= seqtk | | 80 | SUBDIR+= seqtk |
80 | SUBDIR+= sewer | | 81 | SUBDIR+= sewer |
81 | SUBDIR+= stacks | | 82 | SUBDIR+= stacks |
82 | SUBDIR+= stride | | 83 | SUBDIR+= stride |
83 | SUBDIR+= trimmomatic | | 84 | SUBDIR+= trimmomatic |
84 | SUBDIR+= vcf-split | | 85 | SUBDIR+= vcf-split |
85 | SUBDIR+= vcf2hap | | 86 | SUBDIR+= vcf2hap |
86 | SUBDIR+= vsearch | | 87 | SUBDIR+= vsearch |
87 | SUBDIR+= xmakemol | | 88 | SUBDIR+= xmakemol |
88 | SUBDIR+= xylem | | 89 | SUBDIR+= xylem |
89 | | | 90 | |
90 | .include "../mk/misc/category.mk" | | 91 | .include "../mk/misc/category.mk" |