Fri Jul 28 16:45:50 2023 UTC ()
biology/atac-seq: Add curl to metaport deps

Standardizing on a download tool simplifies pipelines


(bacon)
diff -r1.4 -r1.5 pkgsrc/biology/atac-seq/Makefile
cvs diff -r1.4 -r1.5 pkgsrc/biology/atac-seq/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/atac-seq/Makefile 2023/07/22 13:30:15 1.4
+++ pkgsrc/biology/atac-seq/Makefile 2023/07/28 16:45:50 1.5
@@ -1,31 +1,32 @@ @@ -1,31 +1,32 @@
1# $NetBSD: Makefile,v 1.4 2023/07/22 13:30:15 bacon Exp $ 1# $NetBSD: Makefile,v 1.5 2023/07/28 16:45:50 bacon Exp $
2# 2#
3 3
4DISTNAME= atac-seq-1.2 4DISTNAME= atac-seq-1.2.1
5CATEGORIES= biology meta-pkgs 5CATEGORIES= biology meta-pkgs
6MASTER_SITES= # empty 6MASTER_SITES= # empty
7 7
8OWNER= bacon@NetBSD.org 8OWNER= bacon@NetBSD.org
9COMMENT= Core tools needed for ATAC-Seq analysis 9COMMENT= Core tools needed for ATAC-Seq analysis
10 10
11DEPENDS+= fastq-trim>=0:../../biology/fastq-trim 11DEPENDS+= fastq-trim>0:../../biology/fastq-trim
12DEPENDS+= fastqc>=0:../../biology/fastqc 12DEPENDS+= fastqc>0:../../biology/fastqc
13DEPENDS+= biolibc-tools>=0:../../biology/biolibc-tools 13DEPENDS+= biolibc-tools>0:../../biology/biolibc-tools
14DEPENDS+= gffread>=0:../../biology/gffread 14DEPENDS+= gffread>0:../../biology/gffread
15DEPENDS+= bwa>=0:../../biology/bwa 15DEPENDS+= bwa>0:../../biology/bwa
16DEPENDS+= bowtie2>=0:../../biology/bowtie2 16DEPENDS+= bowtie2>0:../../biology/bowtie2
17DEPENDS+= samtools>=0:../../biology/samtools 17DEPENDS+= samtools>0:../../biology/samtools
18DEPENDS+= igv>=0:../../biology/igv 18DEPENDS+= igv>0:../../biology/igv
19DEPENDS+= ${PYPKGPREFIX}-macs2>=0:../../biology/py-macs2 19DEPENDS+= ${PYPKGPREFIX}-macs2>0:../../biology/py-macs2
20DEPENDS+= fasda>=0:../../biology/fasda 20DEPENDS+= fasda>0:../../biology/fasda
21DEPENDS+= peak-classifier>=0:../../biology/peak-classifier 21DEPENDS+= peak-classifier>0:../../biology/peak-classifier
22DEPENDS+= webbrowser>=0:../../www/webbrowser 
23DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc 22DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc
 23DEPENDS+= webbrowser>0:../../www/webbrowser
 24DEPENDS+= curl>0:../../www/curl
24 25
25META_PACKAGE= yes 26META_PACKAGE= yes
26 27
27# Inherited from py-macs2 dep 28# Inherited from py-macs2 dep
28PYTHON_VERSIONS_INCOMPATIBLE= 27 38 29PYTHON_VERSIONS_INCOMPATIBLE= 27 38
29 30
30.include "../../lang/python/application.mk" 31.include "../../lang/python/application.mk"
31.include "../../mk/bsd.pkg.mk" 32.include "../../mk/bsd.pkg.mk"