Mon Jul 31 14:38:36 2023 UTC ()
biology/rna-seq: Add rna-star dep to metapackage


(bacon)
diff -r1.6 -r1.7 pkgsrc/biology/rna-seq/Makefile
cvs diff -r1.6 -r1.7 pkgsrc/biology/rna-seq/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/rna-seq/Makefile 2023/07/28 16:43:40 1.6
+++ pkgsrc/biology/rna-seq/Makefile 2023/07/31 14:38:36 1.7
@@ -1,27 +1,28 @@ @@ -1,27 +1,28 @@
1# $NetBSD: Makefile,v 1.6 2023/07/28 16:43:40 bacon Exp $ 1# $NetBSD: Makefile,v 1.7 2023/07/31 14:38:36 bacon Exp $
2# 2#
3 3
4DISTNAME= rna-seq-1.2.1 4DISTNAME= rna-seq-1.2.2
5CATEGORIES= biology meta-pkgs 5CATEGORIES= biology meta-pkgs
6MASTER_SITES= # empty 6MASTER_SITES= # empty
7 7
8OWNER= bacon@NetBSD.org 8OWNER= bacon@NetBSD.org
9COMMENT= Core tools needed for RNA-Seq analysis 9COMMENT= Core tools needed for RNA-Seq analysis
10 10
11DEPENDS+= fastq-trim>0:../../biology/fastq-trim 11DEPENDS+= fastq-trim>0:../../biology/fastq-trim
12DEPENDS+= fastqc>0:../../biology/fastqc 12DEPENDS+= fastqc>0:../../biology/fastqc
13DEPENDS+= biolibc-tools>0:../../biology/biolibc-tools 13DEPENDS+= biolibc-tools>0:../../biology/biolibc-tools
14DEPENDS+= gffread>0:../../biology/gffread 14DEPENDS+= gffread>0:../../biology/gffread
15DEPENDS+= kallisto>0:../../biology/kallisto 15DEPENDS+= kallisto>0:../../biology/kallisto
16DEPENDS+= hisat2>0:../../biology/hisat2 16DEPENDS+= hisat2>0:../../biology/hisat2
 17DEPENDS+= rna-star>0:../../biology/rna-star
17DEPENDS+= samtools>0:../../biology/samtools 18DEPENDS+= samtools>0:../../biology/samtools
18DEPENDS+= igv>0:../../biology/igv 19DEPENDS+= igv>0:../../biology/igv
19DEPENDS+= fasda>0:../../biology/fasda 20DEPENDS+= fasda>0:../../biology/fasda
20DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc 21DEPENDS+= ${PYPKGPREFIX}-multiqc-[0-9]*:../../biology/py-multiqc
21DEPENDS+= webbrowser>0:../../www/webbrowser 22DEPENDS+= webbrowser>0:../../www/webbrowser
22DEPENDS+= curl>0:../../www/curl 23DEPENDS+= curl>0:../../www/curl
23 24
24META_PACKAGE= yes 25META_PACKAGE= yes
25 26
26.include "../../lang/python/application.mk" 27.include "../../lang/python/application.mk"
27.include "../../mk/bsd.pkg.mk" 28.include "../../mk/bsd.pkg.mk"