Sun Nov 12 15:32:12 2023 UTC ()
biology/vsearch: Update to 2.25.0

chimeras_denovo: Allow user to specify mismatch tolerance

Changes: https://github.com/torognes/vsearch/releases


(bacon)
diff -r1.6 -r1.7 pkgsrc/biology/vsearch/Makefile
diff -r1.5 -r1.6 pkgsrc/biology/vsearch/PLIST
diff -r1.8 -r1.9 pkgsrc/biology/vsearch/distinfo
cvs diff -r1.6 -r1.7 pkgsrc/biology/vsearch/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/Makefile 2023/10/27 14:15:38 1.6
+++ pkgsrc/biology/vsearch/Makefile 2023/11/12 15:32:12 1.7
@@ -1,16 +1,16 @@ @@ -1,16 +1,16 @@
1# $NetBSD: Makefile,v 1.6 2023/10/27 14:15:38 bacon Exp $ 1# $NetBSD: Makefile,v 1.7 2023/11/12 15:32:12 bacon Exp $
2 2
3DISTNAME= vsearch-2.24.0 3DISTNAME= vsearch-2.25.0
4CATEGORIES= biology 4CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=torognes/} 5MASTER_SITES= ${MASTER_SITE_GITHUB:=torognes/}
6GITHUB_TAG= v${PKGVERSION_NOREV} 6GITHUB_TAG= v${PKGVERSION_NOREV}
7 7
8MAINTAINER= bacon@NetBSD.org 8MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://github.com/torognes/vsearch 9HOMEPAGE= https://github.com/torognes/vsearch
10COMMENT= Versatile open-source tool for metagenomics 10COMMENT= Versatile open-source tool for metagenomics
11LICENSE= gnu-gpl-v3 11LICENSE= gnu-gpl-v3
12 12
13# Works on powerpc64, but only in little endian mode 13# Works on powerpc64, but only in little endian mode
14ONLY_FOR_PLATFORM= *-*-aarch64* *-*-powerpc64 *-*-x86_64 14ONLY_FOR_PLATFORM= *-*-aarch64* *-*-powerpc64 *-*-x86_64
15 15
16USE_LANGUAGES= c c++ 16USE_LANGUAGES= c c++
cvs diff -r1.5 -r1.6 pkgsrc/biology/vsearch/PLIST (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/PLIST 2023/10/27 14:15:38 1.5
+++ pkgsrc/biology/vsearch/PLIST 2023/11/12 15:32:12 1.6
@@ -1,3 +1,3 @@ @@ -1,3 +1,3 @@
1@comment $NetBSD: PLIST,v 1.5 2023/10/27 14:15:38 bacon Exp $ 1@comment $NetBSD: PLIST,v 1.6 2023/11/12 15:32:12 bacon Exp $
2bin/vsearch 2bin/vsearch
3man/man1/vsearch.1 3man/man1/vsearch.1
cvs diff -r1.8 -r1.9 pkgsrc/biology/vsearch/distinfo (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/distinfo 2023/10/27 14:15:38 1.8
+++ pkgsrc/biology/vsearch/distinfo 2023/11/12 15:32:12 1.9
@@ -1,5 +1,5 @@ @@ -1,5 +1,5 @@
1$NetBSD: distinfo,v 1.8 2023/10/27 14:15:38 bacon Exp $ 1$NetBSD: distinfo,v 1.9 2023/11/12 15:32:12 bacon Exp $
2 2
3BLAKE2s (vsearch-2.24.0.tar.gz) = 625748c36daefd4722334f6653ffee2d811d795b6cfbf2e7b69c8da2a39071e5 3BLAKE2s (vsearch-2.25.0.tar.gz) = 51ecf118015e928d07cf39548b8fe310ea82dc3451a9e111335acf4ed0dddfeb
4SHA512 (vsearch-2.24.0.tar.gz) = 47ee5ff12e6a6478c463569d80881a0a99f2fa95e0a32cc32d7478f1c51ebd651d0f694f6ff6d51d9d998e7cffd28a20db46295b690fe00d37efa208d8a93145 4SHA512 (vsearch-2.25.0.tar.gz) = eba2cb3d6a571521d165f1da669731248232eab84908d0bdca6e16635dd0b93d0737afab75bf670c9c1d978b74cb1bcd045bbcf44438a9f66f6bdfd6a3de10a7
5Size (vsearch-2.24.0.tar.gz) = 267096 bytes 5Size (vsearch-2.25.0.tar.gz) = 267819 bytes