Tue Jan 23 13:26:59 2024 UTC (121d)
biology/vsearch: Update to 2.27.0

Add FASTQ support to usearch_global and search_exact
Code cleanup and manual clarifications

Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout


(bacon)
diff -r1.8 -r1.9 pkgsrc/biology/vsearch/Makefile
diff -r1.7 -r1.8 pkgsrc/biology/vsearch/PLIST
diff -r1.10 -r1.11 pkgsrc/biology/vsearch/distinfo
cvs diff -r1.8 -r1.9 pkgsrc/biology/vsearch/Makefile (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/Makefile 2023/11/26 12:35:56 1.8
+++ pkgsrc/biology/vsearch/Makefile 2024/01/23 13:26:59 1.9
@@ -1,16 +1,16 @@ @@ -1,16 +1,16 @@
1# $NetBSD: Makefile,v 1.8 2023/11/26 12:35:56 bacon Exp $ 1# $NetBSD: Makefile,v 1.9 2024/01/23 13:26:59 bacon Exp $
2 2
3DISTNAME= vsearch-2.26.1 3DISTNAME= vsearch-2.27.0
4CATEGORIES= biology 4CATEGORIES= biology
5MASTER_SITES= ${MASTER_SITE_GITHUB:=torognes/} 5MASTER_SITES= ${MASTER_SITE_GITHUB:=torognes/}
6GITHUB_TAG= v${PKGVERSION_NOREV} 6GITHUB_TAG= v${PKGVERSION_NOREV}
7 7
8MAINTAINER= bacon@NetBSD.org 8MAINTAINER= bacon@NetBSD.org
9HOMEPAGE= https://github.com/torognes/vsearch 9HOMEPAGE= https://github.com/torognes/vsearch
10COMMENT= Versatile open-source tool for metagenomics 10COMMENT= Versatile open-source tool for metagenomics
11LICENSE= gnu-gpl-v3 11LICENSE= gnu-gpl-v3
12 12
13# Works on powerpc64, but only in little endian mode 13# Works on powerpc64, but only in little endian mode
14ONLY_FOR_PLATFORM= *-*-aarch64* *-*-powerpc64 *-*-x86_64 14ONLY_FOR_PLATFORM= *-*-aarch64* *-*-powerpc64 *-*-x86_64
15 15
16USE_LANGUAGES= c c++ 16USE_LANGUAGES= c c++
cvs diff -r1.7 -r1.8 pkgsrc/biology/vsearch/PLIST (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/PLIST 2023/11/26 12:35:56 1.7
+++ pkgsrc/biology/vsearch/PLIST 2024/01/23 13:26:59 1.8
@@ -1,3 +1,3 @@ @@ -1,3 +1,3 @@
1@comment $NetBSD: PLIST,v 1.7 2023/11/26 12:35:56 bacon Exp $ 1@comment $NetBSD: PLIST,v 1.8 2024/01/23 13:26:59 bacon Exp $
2bin/vsearch 2bin/vsearch
3man/man1/vsearch.1 3man/man1/vsearch.1
cvs diff -r1.10 -r1.11 pkgsrc/biology/vsearch/distinfo (expand / switch to unified diff)

--- pkgsrc/biology/vsearch/distinfo 2023/11/26 12:35:56 1.10
+++ pkgsrc/biology/vsearch/distinfo 2024/01/23 13:26:59 1.11
@@ -1,5 +1,5 @@ @@ -1,5 +1,5 @@
1$NetBSD: distinfo,v 1.10 2023/11/26 12:35:56 bacon Exp $ 1$NetBSD: distinfo,v 1.11 2024/01/23 13:26:59 bacon Exp $
2 2
3BLAKE2s (vsearch-2.26.1.tar.gz) = 54dff5d0302fd2963be71b7f369556b52f40934e0cbf4051e993042fcc78015c 3BLAKE2s (vsearch-2.27.0.tar.gz) = 8b0ae42005ef3abc67ea10385210b3e75a8abdeec401180d819d7e4e70e8e656
4SHA512 (vsearch-2.26.1.tar.gz) = b1a50fc701283cc8525daae1d904692a60027fbcbe4c1e1216b697f8e785f4a9d1b19ad152341777aa0483258cd04b1e60aad34fbf9f82d3fac12e9b959722f6 4SHA512 (vsearch-2.27.0.tar.gz) = 521f0b031f42d0fd39ecabde683db765462874de6111bf6c1d52de5b78e332c4b5f85ad20587ad14afd27c3c923de0c65bf6e8cd9a8bb26e12aebdd2dab7e586
5Size (vsearch-2.26.1.tar.gz) = 268305 bytes 5Size (vsearch-2.27.0.tar.gz) = 269210 bytes