pkgsrc Source-Changes / commit log search

(devel/R-Rcpp) Updated 1.0.7 to 1.0.8.2

2022-03-10 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

* inst/tinytest/cpp/sugar.cpp: Also conditionally replace
std::unary_function with std::function
* vignettes/rmd/Rcpp-sugar.Rmd: Replace std::unary_function example
with std::function (implicitly requiring C++ in vignette example)
* vignettes/rmd/Rcpp-FAQ.Rmd: Idem

2022-03-09 Dirk Eddelbuettel <edd@debian.org>

* inst/include/Rcpp/Language.h: To quieten compilations, replace
std::(unary|binary)_function with std::function for C++11 or later
* inst/include/Rcpp/StringTransformer.he: Idem

2022-01-21 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

2022-01-20 Dirk Eddelbuettel <edd@debian.org>

* src/attributes.cpp: Make three small changes to permit compilation
under C++98 now (while we consider just turning to C++11 overall)

2022-01-14 Dirk Eddelbuettel <edd@debian.org>

* inst/tinytest/test_packageversion.R: Comparison to 'dev' revision
version now tolerant of optional trailing zero (e.g. 1.0.8.0)

2022-01-11 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Date, Version): Release 1.0.8

* inst/include/Rcpp/config.h: Idem
* inst/NEWS.Rd: Idem
* vignettes/rmd/Rcpp.bib: Idem
* inst/bib/Rcpp.bib: Idem
* vignettes/pdf/*: Rebuilt

* inst/include/Rcpp/r/headers.h: STRICT_R_HEADERS set by default
unless override RCPP_NO_STRICT_HEADERS is set (cf issue #1158)

2022-01-10 Dirk Eddelbuettel <edd@debian.org>

* vignettes/rmd/Rcpp.bib: Updated CRAN and R references
* inst/bib/Rcpp.bib: Idem
* vignettes/rmd/getCurrentVersionsOfCitedPackages.R: Updated

2022-01-01 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version

* inst/NEWS.Rd: Added entries for a few PRs since last release

* vignettes/rmd/Rcpp.bib: Provide both url and doi entries
* inst/bib/Rcpp.bib: Idem

2021-12-28 Dirk Eddelbuettel <edd@debian.org>

* README.md: Add section on performance

2021-12-24 Dirk Eddelbuettel <edd@debian.org>

* README.md: Update usage counts

2021-12-16 Dirk Eddelbuettel <edd@debian.org>

* vignettes/rmd/Rcpp.bib: Update JSS references to new doi scheme,
update http URL links to https
* inst/bib/Rcpp.bib: Idem

2021-12-10 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

2021-12-08 Dirk Eddelbuettel <edd@debian.org>

* inst/include/Rcpp/Rcpp: Added as new entry point
* inst/include/Rcpp/Light: Added as lighter-weight entry point
* inst/include/Rcpp/Lighter: Idem
* inst/include/Rcpp/Lightest: Idem

2021-11-30 Dirk Eddelbuettel <edd@debian.org>

* README.md: Remove Travis badge
* .travis.yml: Removed

2021-11-15 Dirk Eddelbuettel <edd@debian.org>

* docker/ci/Dockerfile: Minor cleanup

2021-11-14 Dirk Eddelbuettel <edd@debian.org>

* R/RcppLdpath.R: Simplified as we no longer need to worry about CXX0X

2021-11-11 Kevin Ushey <kevinushey@gmail.com>

* R/RcppLdpath.R: CxxFlags() now quotes its include path

2021-10-15 Travers Ching <traversc@gmail.com>

* inst/tinytest/testRcppAttributePackage: Tests `signature` attribute
* inst/tinytest/test_attribute_package.R: Tests `signature` attribute

2021-10-13 Dirk Eddelbuettel <edd@debian.org>

* README.md: Switch JSS url to doi form per JSS request
* man/Rcpp-package.Rd: Idem
* man/RcppLdFlags.Rd: Idem
* inst/CITATION: Only use doi entries in three citEntry blocks

2021-10-11 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

* .codecov.yml (comment): Disable codecov comments on PRs

2021-10-10 Travers Ching <traversc@gmail.com>

* src/attributes.cpp: Add `signature` attribute and syntax checks

2021-10-02 Dirk Eddelbuettel <edd@debian.org>

* .github/workflows/docker.yaml (jobs): Add container builder action

2021-10-01 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

* inst/NEWS.Rd: Updated

2021-09-29 I単aki Ucar <iucar@fedoraproject.org>

* inst/include/Rcpp/XPtr.h: Check for new define
`RCPP_USE_FINALIZE_ON_EXIT` to flip the value of XPtr's `finalizeOnExit`
parameter from false (default) to true.
* inst/tinytest/test_xptr.R: Added test for this functionality.

2021-09-27 Dirk Eddelbuettel <edd@debian.org>

* README.md: Added total downloads badge

2021-09-06 Dirk Eddelbuettel <edd@debian.org>

* docker/ci-4.0/Dockerfile: Using R 4.0.5 to build ci-4.0
* .github/workflows/ci.yaml (jobs): Also run against R 4.0.*

2021-09-05 Dirk Eddelbuettel <edd@debian.org>

* inst/examples/Misc/piSugar.cpp (piSugar): Remove spurious call to
RNGScope we do not need with Rcpp Attributes
* inst/examples/RcppGibbs/RcppGibbs.R (Rgibbs): Comment on two uses
of RNGScope as historical in pre-Attributes code
* inst/examples/RcppGibbs/timeRNGs.R: Idem for one more

2021-08-05 Dirk Eddelbuettel <edd@debian.org>

* inst/bib/Rcpp.bib: Use https for CRAN URLs
* vignettes/rmd/Rcpp.bib: Idem

2021-07-25 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

2021-07-24 Dirk Eddelbuettel <edd@debian.org>

* vignettes/rmd/Rcpp-FAQ.Rmd: New entry on growing vectors

2021-07-08 Dirk Eddelbuettel <edd@debian.org>

* DESCRIPTION (Version, Date): Roll minor version
* inst/include/Rcpp/config.h: Idem

* cleanup: Check for optional vignettes/rmd before trying to access it

(mef)

2022-03-14 11:18:15 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1439 / diff

doc: Updated sysutils/R-unix to 1.5.4

(mef)

2022-03-14 11:18:03 UTC MAIN commitmail json YAML

pkgsrc/sysutils/R-unix/Makefile@1.2 / diff
pkgsrc/sysutils/R-unix/distinfo@1.4 / diff

(sysutils/R-unix) Updated 1.5.3 to 1.5.4

1.5.4
- Remove examples and test for rlimit_as() and rlimit_data() which give an
error on MacOS 12 if the value is too low.

(mef)

2022-03-14 11:17:42 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1438 / diff

doc: Updated www/guile-haunt to 0.2.6

(nikita)

2022-03-14 11:17:22 UTC MAIN commitmail json YAML

pkgsrc/www/guile-haunt/Makefile@1.5 / diff
pkgsrc/www/guile-haunt/distinfo@1.6 / diff
pkgsrc/www/guile-haunt/patches/patch-Makefile.am@1.1 / diff
pkgsrc/www/guile-haunt/patches/patch-configure.ac@1.1 / diff
pkgsrc/www/guile-haunt/patches/patch-haunt_ui_serve.scm@1.1 / diff

guile-haunt: Update to 2.6

(nikita)

2022-03-14 11:11:50 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1437 / diff
pkgsrc/doc/TODO@1.21598 / diff

Updated fonts/harfbuzz, fonts/harfbuzz-icu, multimedia/mkvtoolnix, lang/rust-analyzer

(adam)

2022-03-14 11:11:27 UTC MAIN commitmail json YAML

pkgsrc/lang/rust-analyzer/Makefile@1.12 / diff
pkgsrc/lang/rust-analyzer/distinfo@1.13 / diff

rust-analyzer: updated to 0.0.2022.03.14:

Release: 2022-03-14

New Features
* (first contribution) improve enum variant field completion, enum variant / struct consistency.
* (first contribution) highlight escape sequences in byte strings.
* BREAKING: switch to upstream inlay hints
* suggest union literals, suggest union fields within an empty union literal
* offer qualified path completions in derives.
* allow configuration of colons in inlay hints (rust-analyzer.inlayHints.renderColons).

Fixes
* (first contribution) add support for new where clause location in associated types.
* (first contribution) stop wrapping ConstParam default values in ConstArg.
* insert dummy values for const generics in subst.
* properly handle proc-macro crate types for nameres.
* fix extract_module on inherent impls.
* show what file paths were expected for unresolved modules.
* emit more detailed highlighting for %, >>, <<.
* detect NixOS when /etc/os-release includes quotes.

Internal Improvements
* add hir_def::MacroId, add Macro{Id} to ModuleDef{Id}.
* simplify CompletionContext.
* remove ide_completion::render::build_ext module.
* another round of clippy fixes.

(adam)

2022-03-14 11:09:24 UTC MAIN commitmail json YAML

pkgsrc/multimedia/mkvtoolnix/Makefile@1.190 / diff
pkgsrc/multimedia/mkvtoolnix/distinfo@1.101 / diff

mkvtoolnix: updated to 66.0.0

Version 66.0.0 "Josie" 2022-03-13

New features and enhancements

* mkvpropedit: added a new option `--chapter-charset` allowing the user to
specify the character set to use when reading the following chapter
file.
* MKVToolNix GUI: each language shortcut can now be associated with an
optional track name that is set along with the language when the shortcut is
used.

Bug fixes

* mkvmerge: Ogg/OGM reader: mkvmerge will no longer abort with an exception
when it encounters Vorbis comments that contain data that isn't valid
UTF-8.
* MKVToolNix GUI: multiplexer: fixed several issues with the tab order of
elements in the "properties" pane and the "output" tab. Also fixed the
language display widgets (e.g. "track language" in the "properties" pane)
never receiving tab focus.
* MKVToolNix GUI: multiplexer: the chapter name template will now be passed to
`mkvmerge` if a chapter file is selected on the "output" tab.

(adam)

2022-03-14 11:08:13 UTC MAIN commitmail json YAML

pkgsrc/fonts/harfbuzz-icu/PLIST@1.12 / diff
pkgsrc/fonts/harfbuzz/Makefile.common@1.15 / diff
pkgsrc/fonts/harfbuzz/PLIST@1.56 / diff
pkgsrc/fonts/harfbuzz/distinfo@1.113 / diff

harfbuzz harfbuzz-icu: updated to 4.0.1

4.0.1

Update OpenType to AAT mappings for hist and vrtr features. (Florian Pircher)

Update IANA Language Subtag Registry to 2022-03-02. (David Corbett)

Update USE shaper to allow any non-numeric tail in a symbol cluster, and remove obsolete data overrides. (David Corbett)

Fix handling of baseline variations to return correctly scaled values. (Matthias Clasen)

A new experimental hb_subset_repack_or_fail() to repack an array of objects, eliminating offset overflows. The API is not available unless HarfBuzz is built with experimental APIs enabled. (Qunxin Liu)

New experimental API
+hb_link_t
+hb_object_t
+hb_subset_repack_or_fail()

(adam)

2022-03-14 10:36:20 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1436 / diff

doc: Updated www/guile-haunt to 0.2.5nb1

(nikita)

2022-03-14 10:36:00 UTC MAIN commitmail json YAML

pkgsrc/www/guile-haunt/Makefile@1.4 / diff
pkgsrc/www/guile-haunt/PLIST@1.3 / diff
pkgsrc/www/guile-haunt/distinfo@1.5 / diff
pkgsrc/www/guile-haunt/patches/patch-haunt_reader.scm deleted
pkgsrc/www/guile-haunt/patches/patch-haunt_reader_skribe.scm deleted
pkgsrc/www/guile-haunt/patches/patch-haunt_ui.scm deleted

guile-haunt: Build with lang/guile30

(nikita)

2022-03-14 10:24:40 UTC MAIN commitmail json YAML

pkgsrc/textproc/lok/Makefile@1.7 / diff

textproc/lok: clarify warning

(pin)

2022-03-14 10:23:06 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1435 / diff

doc: Updated wm/shod to 2.4.0

(pin)

2022-03-14 10:22:49 UTC MAIN commitmail json YAML

pkgsrc/wm/shod/Makefile@1.5 / diff
pkgsrc/wm/shod/distinfo@1.7 / diff

wm/shod: update to 2.4.0

-Several changes in the names of X resources
-Add -s and -m
-Add window rules and deskapp ordering

(pin)

2022-03-14 10:21:59 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1434 / diff

doc: Updated devel/git-cliff to 0.6.1

(pin)

2022-03-14 10:21:40 UTC MAIN commitmail json YAML

pkgsrc/devel/git-cliff/Makefile@1.13 / diff
pkgsrc/devel/git-cliff/cargo-depends.mk@1.11 / diff
pkgsrc/devel/git-cliff/distinfo@1.13 / diff

devel/git-cliff: update to 0.6.1

[0.6.1] - 2022-03-13
Bug Fixes
-Do not skip all tags when skip_tags is empty (#63)
-Use root commit when --latest and there is only one tag (#59)
-Use the correct branch for codecov (#65)
-Fix keepachangelog config example (#66)

Documentation
-Add another option of GitHub Actions (#64)
-Document timestamp format of Release struct (#67)

Miscellaneous Tasks
-Upgrade regex dependency to fix CVE-2022-24713
-Upgrade dependencies

(pin)

2022-03-14 10:20:44 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1433 / diff

doc: Updated x11/citron to 0.14.2

(pin)

2022-03-14 10:20:25 UTC MAIN commitmail json YAML

pkgsrc/x11/citron/Makefile@1.11 / diff
pkgsrc/x11/citron/cargo-depends.mk@1.9 / diff
pkgsrc/x11/citron/distinfo@1.11 / diff

x11/citron: update to 0.14.2

v0.14.2
-Important: move from vulnerable chrono crate to time.

v0.14.1 Note: This version was never release outside crates.io
-build(deps): bump libmacchina to v6.1.0
This version bump addresses:
- a network bug causing IPv6 addresses to show up instead of the
preferred IPv4.
- a battery bug causing libmacchina to pick the first non "ADP" battery
device, which can lead to it picking "wacom_*" devices, which aren't
very crucial.

(pin)

2022-03-14 10:19:34 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1432 / diff

doc: Updated sysutils/broot to 1.9.4

(pin)

2022-03-14 10:19:15 UTC MAIN commitmail json YAML

pkgsrc/sysutils/broot/Makefile@1.42 / diff
pkgsrc/sysutils/broot/cargo-depends.mk@1.34 / diff
pkgsrc/sysutils/broot/distinfo@1.40 / diff

sysutils/broot: update to 1.9.4

-don't query size of remote filesystems anymore. This fixes some 10 seconds
hangs in some cases (e.g. filesystem screen) when a remote filesystem is
unreachable.

(pin)

2022-03-14 10:18:31 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1431 / diff

doc: Updated sysutils/bkt to 0.5.3

(pin)

2022-03-14 10:18:08 UTC MAIN commitmail json YAML

pkgsrc/sysutils/bkt/Makefile@1.3 / diff
pkgsrc/sysutils/bkt/cargo-depends.mk@1.2 / diff
pkgsrc/sysutils/bkt/distinfo@1.3 / diff

sysutils/bkt: update to 0.5.3

-Patch release to aid packaging for Debian (see #12).
No new functionality vs. 0.5.2.

(pin)

2022-03-14 10:02:15 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1430 / diff

Updated databases/sqlite3, databases/sqlite3-docs, databases/sqlite3-tcl, devel/lemon

(adam)

2022-03-14 10:01:19 UTC MAIN commitmail json YAML

pkgsrc/databases/sqlite3-docs/PLIST@1.109 / diff
pkgsrc/databases/sqlite3-docs/distinfo@1.112 / diff
pkgsrc/databases/sqlite3-tcl/distinfo@1.124 / diff
pkgsrc/databases/sqlite3/Makefile.common@1.86 / diff
pkgsrc/databases/sqlite3/distinfo@1.179 / diff
pkgsrc/devel/lemon/distinfo@1.53 / diff

sqlite3: updated to 3.38.1

3.38.1 (2022-03-12):

Fix problems with the new Bloom filter optimization that might cause some obscure queries to get an incorrect answer.
Fix the localtime modifier of the date and time functions so that it preserves fractional seconds.
Fix the sqlite_offset SQL function so that it works correctly even in corner cases such as when the argument is a virtual column or the column of a view.
Fix row value IN operator constraints on virtual tables so that they work correctly even if the virtual table implementation relies on bytecode to filter rows that do not satisfy the constraint.
Other minor fixes to assert() statements, test cases, and documentation.

(adam)

2022-03-14 03:10:49 UTC MAIN commitmail json YAML

pkgsrc/multimedia/totem/distinfo@1.48 / diff
pkgsrc/multimedia/totem/patches/patch-data_appdata_meson.build@1.1 / diff
pkgsrc/multimedia/totem/patches/patch-data_meson.build@1.1 / diff

totem: fix build with latest meson

(nia)

2022-03-14 03:01:34 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1429 / diff

Updated www/nginx to 1.20.2nb5.
Updated www/nginx-devel to 1.21.6nb4.
Added lang/njs version 0.7.2.

(osa)

2022-03-14 02:59:13 UTC MAIN commitmail json YAML

pkgsrc/lang/Makefile@1.641 / diff

lang/njs - connect to build

(osa)

2022-03-14 02:52:48 UTC MAIN commitmail json YAML

pkgsrc/lang/njs/DESCR@1.1 / diff
pkgsrc/lang/njs/Makefile@1.1 / diff
pkgsrc/lang/njs/PLIST@1.1 / diff
pkgsrc/lang/njs/distinfo@1.1 / diff
pkgsrc/lang/njs/options.mk@1.1 / diff

lang/njs: add new port NGINX JavaScript (njs) command line utility

NGINX JavaScript, also knows as njs, is a subset of the JavaScript
language that allows extending nginx functionality. njs is created
in compliance with ECMAScript 5.1 (strict mode) with some ECMAScript 6
and later extensions. It's easy to use njs command line utility to
develop and debug additional functionality. Also, it's light-weight
and very useful as a shebang in some cases as the nodejs substitutor.

(osa)

2022-03-14 02:51:31 UTC MAIN commitmail json YAML

pkgsrc/time/gnome-calendar/distinfo@1.5 / diff
pkgsrc/time/gnome-calendar/patches/patch-data_appdata_meson.build@1.1 / diff

gnome-calendar: fix build with latest meson

(nia)

2022-03-14 02:49:09 UTC MAIN commitmail json YAML

pkgsrc/www/nginx-devel/Makefile@1.74 / diff
pkgsrc/www/nginx-devel/PLIST@1.8 / diff
pkgsrc/www/nginx/Makefile@1.109 / diff
pkgsrc/www/nginx/Makefile.common@1.23 / diff
pkgsrc/www/nginx/PLIST@1.14 / diff

www/nginx*: remove build and install of njs command line utility

The new and shiny lang/njs package will be added shortly.

Bump PKGREVISIONs.

(osa)

2022-03-13 20:57:42 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1428 / diff

doc: Updated lang/go-bin to 1.17.8

(tnn)

2022-03-13 20:56:52 UTC MAIN commitmail json YAML

pkgsrc/lang/go-bin/Makefile@1.10 / diff
pkgsrc/lang/go-bin/distinfo@1.5 / diff

go-bin: update to 1.17.8

- use official upstream binaries for Darwin/aarch64
- refresh locally maintained NetBSD/aarch64 distribution

(tnn)

2022-03-13 20:44:56 UTC MAIN commitmail json YAML

pkgsrc/sysutils/xentools415/Makefile@1.11 / diff

Explicitely disable golang; should fix build when there is a go compiler
in $PATH. Idea from Benny Siegert

(bouyer)

2022-03-13 19:36:08 UTC MAIN commitmail json YAML

gnome-control-center: Fix build with latest meson.

(nia)

2022-03-13 17:32:59 UTC MAIN commitmail json YAML

pkgsrc/databases/ldb/Makefile@1.26 / diff

ldb: needs newer tevent

(nia)

2022-03-13 16:48:52 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1427 / diff

doc: Updated sysutils/auto-admin to 0.7.10

(bacon)

2022-03-13 16:48:43 UTC MAIN commitmail json YAML

pkgsrc/sysutils/auto-admin/Makefile@1.9 / diff
pkgsrc/sysutils/auto-admin/PLIST@1.9 / diff
pkgsrc/sysutils/auto-admin/distinfo@1.11 / diff

sysutils/auto-admin: Update to 0.7.10

Numerous minor fixes to improve robustness and usability
Begin adding man pages
A few new scripts factored out from desktop-installer, etc.

(bacon)

2022-03-13 16:07:34 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1426 / diff

remove junk characters (hi gdt)

(tnn)

2022-03-13 15:55:58 UTC MAIN commitmail json YAML

pkgsrc/doc/TODO@1.21597 / diff

doc: sync TODO

(tnn)

2022-03-13 15:55:34 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1425 / diff

doc: MesaLib major update done

(tnn)

2022-03-13 15:52:50 UTC MAIN commitmail json YAML

MesaLib: add patches for prior 21.3.7 update

(tnn)

2022-03-13 15:50:05 UTC MAIN commitmail json YAML

MesaLib: update to 21.3.7

Of particular note is this change in Mesa 21.2:
"32-bit x86 builds now default disable x87 math and use sse2."
This might need to be revisited in pkgsrc.

Bugfixes omitted from ChangeLog.

New features in Mesa 21.3:
VK_EXT_color_write_enable on lavapipe
GL_ARB_texture_filter_anisotropic in llvmpipe
Anisotropic texture filtering in lavapipe
VK_EXT_shader_atomic_float2 on Intel and RADV.
VK_EXT_vertex_input_dynamic_state on RADV.
VK_KHR_timeline_semaphore on lavapipe
VK_EXT_external_memory_host on lavapipe
GL_AMD_pinned_memory on llvmpipe
GL 4.5 compatibility on llvmpipe
VK_EXT_primitive_topology_list_restart on RADV and lavapipe.
ES 3.2 on zink
VK_KHR_depth_stencil_resolve on lavapipe
VK_KHR_shader_integer_dot_product on RADV.
OpenGL FP16 support on llvmpipe
VK_KHR_shader_float16_int8 on lavapipe
VK_KHR_shader_subgroup_extended_types on lavapipe
VK_KHR_spirv_1_4 on lavapipe
Experimental raytracing support on RADV
VK_KHR_synchronization2 on Intel
NGG shader based culling is now enabled by default on GFX10.3 on RADV.
VK_KHR_maintenance4 on RADV
VK_KHR_format_feature_flags2 on RADV.
EGL_EXT_present_opaque on wayland

New features in Mesa 21.2:
zink supports GL_ARB_texture_filter_minmax, GL_ARB_shader_clock
VK_EXT_provoking_vertex on RADV.
VK_EXT_extended_dynamic_state2 on RADV.
VK_EXT_global_priority_query on RADV.
VK_EXT_physical_device_drm on RADV.
VK_KHR_shader_subgroup_uniform_control_flow on Intel and RADV.
VK_EXT_color_write_enable on RADV.
32-bit x86 builds now default disable x87 math and use sse2.
GL ES 3.1 on GT21x hardware.
VK_EXT_acquire_drm_display on RADV and ANV.
VK_EXT_vertex_input_dynamic_state on lavapipe
wideLines on lavapipe
VK_EXT_line_rasterization on lavapipe
VK_EXT_multi_draw on ANV, lavapipe, and RADV
VK_KHR_separate_depth_stencil_layouts on lavapipe
VK_EXT_separate_stencil_usage on lavapipe
VK_EXT_extended_dynamic_state2 on lavapipe
NGG shader based primitive culling is now supported by RADV.
Panfrost supports OpenGL ES 3.1
New Asahi driver for the Apple M1
GL_ARB_sample_locations on zink
GL_ARB_sparse_buffer on zink
GL_ARB_shader_group_vote on zink
DRM format modifiers on zink
freedreno+turnip: Initial support for a6xx gen4 (a660, a635)

New features in Mesa 21.1:
VK_KHR_workgroup_memory_explicit_layout on Intel, RADV
DRM format modifiers for AMD.
VK_KHR_zero_initialize_workgroup_memory on Intel, RADV
Zink exposes GL 4.6 and ES 3.1
GL_EXT_depth_bounds_test on softpipe, zink
GL_EXT_texture_filter_minmax on nvc0 (gm200+)
GL_ARB_texture_filter_minmax on nvc0 (gm200+)
GL_ARB_post_depth_coverage on zink
VK_KHR_copy_commands2 on lavapipe
lavapipe exposes Vulkan 1.1
VRS attachment on RADV

New features in Mesa 21.0:
GL_EXT_demote_to_helper_invocation on radeonsi
GL_NV_compute_shader_derivatives on radeonsi
EGL_MESA_platform_xcb
Removed GL_NV_point_sprite for classic swrast.
driconf: remove glx_disable_oml_sync_control, glx_disable_sgi_video_sync, and glx_disable_ext_buffer_age
Removed support for loading DRI drivers older than Mesa 8.0, including all DRI1 support
Add support for VK_VALVE_mutable_descriptor_type on RADV
Removed classic OSMesa in favor of the newly improved gallium OSMesa
VK_KHR_fragment_shading_rate on RADV (RDNA2 only)
Freedreno a6xx exposes GL 3.3
Classic swrast dri driver removed in favor of gallium swrast (llvmpipe or softpipe)
Panfrost g31/g52/g72 exposes ES 3.0
Panfrost t760+ exposes GL 3.1 (including on Bifrost)
Sparse memory support on RADV
Rapid packed math (16bit-vectorization) on RADV

New features in Mesa 20.3:
GL 4.5 on llvmpipe
GL_INTEL_blackhole_render on radeonsi
GL_NV_copy_depth_to_color for NIR
GL_NV_half_float
GL_NV_shader_atomic_int64 on radeonsi
EGL_KHR_swap_buffers_with_damage on X11 (DRI3)
VK_PRESENT_MODE_FIFO_RELAXED on X11
GLX_EXT_swap_control for DRI2 and DRI3
GLX_EXT_swap_control_tear for DRI3
VK_KHR_copy_commands2 on RADV
VK_KHR_shader_terminate_invocation on RADV
NGG GS support in ACO
VK_KHR_shader_terminate_invocation on ANV
driconf: add glx_extension_override
driconf: add indirect_gl_extension_override
VK_AMD_mixed_attachment_samples on RADV (GFX6-GFX7).
GL_MESA_pack_invert on r100 and vieux
GL_ANGLE_pack_reverse_row_order
VK_EXT_shader_image_atomic_int64 on RADV

New features in mesa 20.2:
GL_ARB_compute_variable_group_size on Iris.
GL_ARB_gpu_shader5 on llvmpipe
GL_ARB_post_depth_coverage on llvmpipe
GLES 3.2 on llvmpipe
GL_EXT_shader_group_vote on GLES3.
GL_EXT_texture_shadow_lod on llvmpipe
VK_AMD_texture_gather_bias_lod on RADV.
VK_AMD_gpu_shader_half_float on RADV/ACO.
VK_AMD_gpu_shader_int16 on RADV/ACO.
VK_EXT_extended_dynamic_state on ANV and RADV.
VK_EXT_image_robustness on RADV.
VK_EXT_private_data on ANV and RADV.
VK_EXT_custom_border_color on ANV and RADV.
VK_EXT_pipeline_creation_cache_control on ANV and RADV.
VK_EXT_shader_demote_to_helper_invocation on RADV/LLVM.
VK_EXT_subgroup_size_control on RADV/ACO.
VK_GOOGLE_user_type on ANV and RADV.
VK_KHR_shader_subgroup_extended_types on RADV/ACO.
GL_ARB_gl_spirv on nvc0/nir.
GL_ARB_spirv_extensions on nvc0/nir.
RADV now uses ACO per default as backend
RADV_DEBUG=llvm option to enable LLVM backend for RADV
VK_EXT_image_robustness for ANV
VK_EXT_shader_atomic_float on ANV
VK_EXT_4444_formats on ANV and RADV.
VK_KHR_memory_model on RADV.
GL 4.5 on llvmpipe
EGL_KHR_swap_buffers_with_damage on X11 (DRI3)

New features in mesa 20.1:
GL_ARB_compute_variable_group_size on i965.
GL_EXT_depth_bounds_test on Iris.
GL_EXT_texture_shadow_lod on radeonsi, nvc0.
GL_NV_alpha_to_coverage_dither_control on radeonsi
GL_NV_copy_image on all gallium drivers.
GL_NV_pixel_buffer_object on all gallium drivers, i915, i965, swrast.
GL_NV_viewport_array2 on nvc0 (GM200+).
GL_NV_viewport_swizzle on nvc0 (GM200+).
VK_AMD_memory_overallocation_behavior on RADV.
VK_KHR_shader_non_semantic_info on Intel, RADV.
GL_EXT_draw_instanced on gles2
VK_KHR_8bit_storage for ACO on GFX8+
VK_KHR_16bit_storage for ACO on GFX8+ (storageInputOutput16 is still unsupported)
shaderInt16 for ACO on GFX9+
VK_KHR_shader_float16_int8 for ACO on GFX8+ (shaderFloat16 is still unsupported)
VK_EXT_robustness2 on Intel, RADV.
Add Rocket Lake (RKL) support on anvil and iris.

(tnn)

2022-03-13 15:26:03 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1424 / diff

doc: note update of ISC DHCP to 4.4.3

net/isc-dhcp4
net/isc-dhclient4
net/isc-dhcpd4
net/isc-dhcrelay4

(taca)

2022-03-13 15:24:38 UTC MAIN commitmail json YAML

pkgsrc/net/isc-dhcp4/Makefile.common@1.43 / diff
pkgsrc/net/isc-dhcp4/distinfo@1.33 / diff
pkgsrc/net/isc-dhcp4/patches/patch-bind_bind-9.11.14_bin_tests_system_metadata_tests.sh deleted
pkgsrc/net/isc-dhcp4/patches/patch-common_dlpi.c@1.4 / diff

net/isc-dhcp4: update to 4.4.3

Internet Systems Consortium DHCP Distribution
Version 4.4.3
9 March 2022
Release Notes

NEW FEATURES

Please note that that ISC DHCP is licensed under the Mozilla Public
License, MPL 2.0. Please see https://www.mozilla.org/en-US/MPL/2.0/ to read
the MPL 2.0 license terms.

NOTE: The client and relay components are now End-Of-Life.
4.4.3 is the final release for those components.

For information on how to install, configure, and run this software, as
well as how to find documentation and report bugs, please consult the
README file.

ISC DHCP uses the standard GNU configure command for installation. Please review the
output of `./configure --help` to see what options are available.

The system has only been tested on Linux and FreeBSD, and may not work on
other platforms. Please subscribe to the dhcp-users mailing list at
https://lists.isc.org/mailman/listinfo/dhcp-users and report any problems
and/or suggested fixes to dhcp-users@lists.isc.org.

ISC DHCP is open source software maintained by Internet Systems
Consortium. This product includes cryptographic software written
by Eric Young (eay@cryptsoft.com).

Changes since 4.4.2-P1 (New Features)

- Two new OMAPI function calls were added, `dhcpctl_timed_connect()`
and `dhcpctl_timed_wait_for_completion()`. These provide timed
versions of creating a connection and waiting for an operation
to complete.
[GitLab #76]

- The BIND libraries have been updated to the latest version, 9.11.36. This fixes a number
of compilation issues on various systems, including OpenWRT. Thanks to
Philip Prindeville for testing on OpenWRT.
[GitLab #218, #171, #180, #192]

- Support was added for the new DHCPv4 option v6-only-preferred, specified
in RFC 8925. A new reason code, V6ONLY, was added to the client script
and the client Linux script sample was updated.
[GitLab #132]

Changes since 4.4.2-P1 (Bug Fixes)

- Minor corrections were made to allow compilation under gcc 10.
[GitLab #117]

- The logic in dhclient that causes it to decline DHCPv4 leases if the
client script exits abnormally (i.e. crashes) has been corrected.
[GitLab #123]

- The limit on the size of a lease file that can be loaded at startup
is now only enforced on 32-bit systems.
[GitLab #92]

- The PRNG initialization has been improved. It now uses the configure flag
`--with-randomdev=PATH`, which specifies the device from which to read the
initial seed. That is typically `/dev/random` (the default value) or
`/dev/urandom`, but may be specified otherwise on the local system. The old
behavior can be forced by disabling this feature (`--with-randomdev=no`).
If the initialization is disabled or reading from the random device fails,
the previous algorithm (retrieve the last four bytes of hardware addresses
from all network interfaces that have them, and use the current time and
process ID) is used.
[GitLab #197]

- A minor dhclient code fix was made to remove compilation warnings.
[GitLab #190]

- The hard-coded MD5 algorithm name was removed in OMAPI connection logic.
Previously, using any other algorithm via a key-algorithm statement would
allow OMAPI connections to be made, but subsequent actions such as updating
an object would fail.
[GitLab #148]

- The parallel build has been improved. Thanks to Sergei Trofimovich for
the patch. The parallel build is still experimental, as officially the
BIND 9 code does not support the parallel build for libraries.
[GitLab #91]

- Handling of LDAP options (`ldap-gssapi-principal` and `ldap-gssapi-keytab`)
has been improved. This is contributed code that has not been tested by ISC. Thank
you to Petr Mensik and Pavel Zhukov for the patches!
[GitLab !56,!75]

- It is now possible to use `option -g ipaddr` in the dhcrelay to replace the giaddr sent to
clients with the given ipaddr, to work around bogus clients like Solaris 11
grub which use giaddr instead of the announced router (3) to set up their
default route. Thanks to Jens Elkner for the patch!
[GitLab #223, !86, !92]

(taca)

2022-03-13 15:22:32 UTC MAIN commitmail json YAML

libLLVM: update to 13.0.1, for mesa update

(tnn)

2022-03-13 15:20:13 UTC MAIN commitmail json YAML

pkgsrc/net/unison/Makefile@1.137 / diff
pkgsrc/net/unison/distinfo@1.33 / diff
pkgsrc/net/unison/patches/patch-src_Makefile@1.4 / diff

net/unison: Rewrite patch comment

Probably the patch should just be deleted as we don't use the install
method. Upstream already has a makefile cleanup issue:
https://github.com/bcpierce00/unison/issues/651

(gdt)

2022-03-13 15:20:01 UTC MAIN commitmail json YAML

libdrm: update to 2.4.100

Changes build framework to meson.

[ANNOUNCE] libdrm 2.4.110
misc bug fixes
[ANNOUNCE] libdrm 2.4.109
misc bug fixes
[ANNOUNCE] libdrm 2.4.108
misc bug fixes, build fixes
[ANNOUNCE] libdrm 2.4.107
misc bug fixes, update AMD product names
[ANNOUNCE] libdrm 2.4.106
Some nouveau debug, amdgpu tests, and a regression fix from 105.
Releasing so 105 doesn't end up being used a lot with a regression.
[ANNOUNCE] libdrm 2.4.105
misc bug fixes, update AMD product names
[ANNOUNCE] libdrm 2.4.104
This release brings updated kernel headers and converts man pages to
reStructuredText.
[ANNOUNCE] libdrm 2.4.103
libdrm mostly for new hw and ame names.
[ANNOUNCE] libdrm 2.4.102
lots of FreeBSD and modetest stuff.
[ANNOUNCE] libdrm 2.4.101
misc bug fixes, update AMD product names

(tnn)

2022-03-13 15:18:16 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1423 / diff

doc: note update of Ruby on Rails 7.0 packages to 7.0.2.3

devel/ruby-activesupport70
devel/ruby-activemodel70
devel/ruby-activejob70
www/ruby-actionview70
www/ruby-actionpack70
databases/ruby-activerecord70
devel/ruby-activestorage70
mail/ruby-actionmailer70
mail/ruby-actionmailbox70
www/ruby-actioncable70
devel/ruby-railties70
textproc/ruby-actiontext70
www/ruby-rails70

(taca)

2022-03-13 15:15:05 UTC MAIN commitmail json YAML

www/ruby-rails70: update to 7.0.2.3

Changes are in devel/ruby-activestorage70 only.

Rails 7.0.2.3 (March 08, 2022)

* Added image transformation validation via configurable allow-list.

Variant now offers a configurable allow-list for
transformation methods in addition to a configurable deny-list for arguments.

[CVE-2022-21831]

(taca)

2022-03-13 15:13:33 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1422 / diff

Removed net/unison-snapshot [gdt 2022-03-13]

(gdt)

2022-03-13 15:12:59 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1421 / diff

doc: note update of Ruby on Rails 6.1 packages to 6.1.4.7

devel/ruby-activesupport61
devel/ruby-activemodel61
devel/ruby-activejob61
www/ruby-actionview61
www/ruby-actionpack61
databases/ruby-activerecord61
devel/ruby-activestorage61
mail/ruby-actionmailer61
mail/ruby-actionmailbox61
www/ruby-actioncable61
devel/ruby-railties61
textproc/ruby-actiontext61
www/ruby-rails61

(taca)

2022-03-13 15:12:13 UTC MAIN commitmail json YAML

pkgsrc/net/Makefile@1.1447 / diff
pkgsrc/net/unison-snapshot/DESCR deleted
pkgsrc/net/unison-snapshot/Makefile deleted
pkgsrc/net/unison-snapshot/PLIST deleted
pkgsrc/net/unison-snapshot/distinfo deleted
pkgsrc/net/unison-snapshot/options.mk deleted

unison-snapshot: Remove (moved to wip)

(gdt)

2022-03-13 15:11:52 UTC MAIN commitmail json YAML

www/ruby-rails61: update to 6.1.4.7

Ruby on Rails 6.1.4.7 is not latest version but it should be easy to pull-up
to pkgsrc-2021Q4.

Changes are in devel/ruby-activestorage61 only.

## Rails 6.1.4.7 (March 08, 2022) ##

* Added image transformation validation via configurable allow-list.

Variant now offers a configurable allow-list for
transformation methods in addition to a configurable deny-list for arguments.

[CVE-2022-21831]

(taca)

2022-03-13 15:10:09 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1420 / diff

doc: note update of Ruby on Rails 6.0 packages to 6.0.4.7

devel/ruby-activesupport60
devel/ruby-activemodel60
devel/ruby-activejob60
www/ruby-actionview60
www/ruby-actionpack60
databases/ruby-activerecord60
mail/ruby-actionmailer60
devel/ruby-activestorage60
mail/ruby-actionmailbox60
www/ruby-actioncable60
devel/ruby-railties60
textproc/ruby-actiontext60
www/ruby-rails60

(taca)

2022-03-13 15:08:23 UTC MAIN commitmail json YAML

www/ruby-rails60: update to 6.0.4.7

Changes are in devel/ruby-activestorage60 only.

## Rails 6.0.4.7 (March 08, 2022) ##

* Added image transformation validation via configurable allow-list.

Variant now offers a configurable allow-list for
transformation methods in addition to a configurable deny-list for arguments.

[CVE-2022-21831]

(taca)

2022-03-13 15:08:19 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1419 / diff

CHANGES: net/unison2.51 renamed to net/unison

(gdt)

2022-03-13 15:07:13 UTC MAIN commitmail json YAML

net/unison*: Rename unison2.51 to unison

During the 2.51 branch, upstream decided that unison will have
backwards compatibility, so that there is no longer any reason to run
old versions. With 2.52, not only can it interop with 2.51 (and
2.48!), but it does not need to have matching ocaml version when
interoperating with other 2.52.x or newer. Thus, unison will now have
a single version in pkgsrc, and this is expected to continue.

(gdt)

2022-03-13 15:07:03 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1418 / diff

doc: note update of Ruby on Rails 5.2 packages to 5.2.6.3

devel/ruby-activesupport52
devel/ruby-activemodel52
devel/ruby-activejob52
www/ruby-actionview52
www/ruby-actionpack52
www/ruby-actioncable52
databases/ruby-activerecord52
devel/ruby-activestorage52
mail/ruby-actionmailer52
devel/ruby-railties52
www/ruby-rails52

(taca)

2022-03-13 15:04:27 UTC MAIN commitmail json YAML

www/ruby-rails52: update to 5.2.6.3

Ruby on Rails 5.2.6.3 is not latest version but it should be easy to pull-up
to pkgsrc-2021Q4.

Changes are in devel/ruby-activestorage52 only.

Rails 5.2.6.3 (March 08, 2022)

* Added image transformation validation via configurable allow-list.

Variant now offers a configurable allow-list for
transformation methods in addition to a configurable deny-list for arguments.

[CVE-2022-21831]

(taca)

2022-03-13 15:01:27 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1417 / diff

doc: Updated net/unison2.51 to 2.52.0

(gdt)

2022-03-13 15:01:21 UTC MAIN commitmail json YAML

pkgsrc/net/unison2.51/Makefile@1.40 / diff
pkgsrc/net/unison2.51/PLIST@1.5 / diff
pkgsrc/net/unison2.51/distinfo@1.11 / diff

net/unison2.51: Update to 2.52.0

## Changes in 2.52.0

Released 2022-03-12

* Feature negotiation, compatible wtih 2.51.
* New archive format (independent of ocaml version, based on umarshal)
Upgrade is automatic.
* New wire protocol (independent of ocaml version, based on umarshal)
New protocol is used if both sides are >= 2.52.0.
* Compatibility with 2.48
* Support for unix-domain sockets
* Many bugfixes and minor improvements
* ocaml compatibility is now >= 4.01
* NEWS is now in NEWS.md and not in the manual

(gdt)

2022-03-13 14:38:10 UTC MAIN commitmail json YAML

pkgsrc/net/iperf2/Makefile@1.4 / diff

iperf2: Add bug report URL

(gdt)

2022-03-13 14:29:07 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1416 / diff

doc: Updated geography/geos to 3.10.2

(gdt)

2022-03-13 14:28:59 UTC MAIN commitmail json YAML

pkgsrc/geography/geos/Makefile@1.41 / diff
pkgsrc/geography/geos/PLIST@1.20 / diff
pkgsrc/geography/geos/distinfo@1.41 / diff

geography/geos: Update to 3.10.2

bugfixes and minor improvements

(gdt)

2022-03-13 08:34:20 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1415 / diff

doc: Added lang/gcc10-aux version 10.3.0

(nia)

2022-03-13 08:34:05 UTC MAIN commitmail json YAML

lang: import gcc10-aux, the gcc10 ada compiler. from irvise in pkgsrc-wip.

(nia)

2022-03-13 08:20:03 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1414 / diff

doc: Updated devel/R-brio to 1.1.3

(mef)

2022-03-13 08:19:51 UTC MAIN commitmail json YAML

pkgsrc/devel/R-brio/Makefile@1.3 / diff
pkgsrc/devel/R-brio/distinfo@1.5 / diff

(devel/R-brio) Updated 1.1.2 to 1.1.3

# brio 1.1.3

* G叩bor Cs叩rdi is now the maintainer.

* New `write_file_raw()` function to write a raw vector to a file.

* Fix memory leak in `read_lines()` (@ms609, #20)

(mef)

2022-03-13 08:05:19 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1413 / diff

doc: Updated biology/minimap2 to 2.24

(mef)

2022-03-13 08:05:07 UTC MAIN commitmail json YAML

pkgsrc/biology/minimap2/Makefile@1.3 / diff
pkgsrc/biology/minimap2/distinfo@1.4 / diff

(biology/minimap2) Updated 2.18 to 2.24

Release 2.24-r1122 (26 December 2021)
-------------------------------------

This release improves alignment around long poorly aligned regions. Older
minimap2 may chain through such regions in rare cases which may result in
missing alignments later. The issue has become worse since the the change of
the chaining algorithm in v2.19. v2.23 implements an incomplete remedy. This
release provides a better solution with a X-drop-like heuristic and by enabling
two-bandwidth chaining in the assembly mode.

(2.24: 26 December 2021, r1122)

Release 2.23-r1111 (18 November 2021)
-------------------------------------

Notable changes:

* Bugfix: fixed missing alignments around long inversions (#806 and #816).
This bug affected v2.19 through v2.22.

* Improvement: avoid extremely long mapping time for pathologic reads with
highly repeated k-mers not in the reference (#771). Use --q-occ-frac=0
to disable the new heuristic.

* Change: use --cap-kalloc=1g by default.

(2.23: 18 November 2021, r1111)

Release 2.22-r1101 (7 August 2021)
----------------------------------

When choosing the best alignment, this release uses logarithm gap penalty and
query-specific mismatch penalty. It improves the sensitivity to long INDELs in
repetitive regions.

Other notable changes:

* Bugfix: fixed an indirect memory leak that may waste a large amount of
memory given highly repetitive reference such as a 16S RNA database (#749).
All versions of minimap2 have this issue.

* New feature: added --cap-kalloc to reduce the peak memory. This option is
not enabled by default but may become the default in future releases.

Known issue:

* Minimap2 may take a long time to map a read (#771). So far it is not clear
if this happens to v2.18 and earlier versions.

(2.22: 7 August 2021, r1101)

Release 2.21-r1071 (6 July 2021)
--------------------------------

This release fixed a regression in short-read mapping introduced in v2.19
(#776). It also fixed invalid comparisons of uninitialized variables, though
these are harmless (#752). Long-read alignment should be identical to v2.20.

(2.21: 6 July 2021, r1071)

Release 2.20-r1061 (27 May 2021)
--------------------------------

This release fixed a bug in the Python module and improves the command-line
compatibiliity with v2.18. In v2.19, if `-r` is specified with an `asm*` preset,
users would get alignments more fragmented than v2.18. This could be an issue
for existing pipelines specifying `-r`. This release resolves this issue.

(2.20: 27 May 2021, r1061)

Release 2.19-r1057 (26 May 2021)
--------------------------------

This release includes a few important improvements backported from unimap:

* Improvement: more contiguous alignment through long INDELs. This is enabled
by the minigraph chaining algorithm. All `asm*` presets now use the new
algorithm. They can find INDELs up to 100kb and may be faster for
chromosome-long contigs. The default mode and `map*` presets use this
algorithm to replace the long-join heuristic.

* Improvement: better alignment in highly repetitive regions by rescuing
high-occurrence seeds. If the distance between two adjacent seeds is too
large, attempt to choose a fraction of high-occurrence seeds in-between.
Minimap2 now produces fewer clippings and alignment break points in long
satellite regions.

* Improvement: allow to specify an interval of k-mer occurrences with `-U`.
For repeat-rich genomes, the automatic k-mer occurrence threshold determined
by `-f` may be too large and makes alignment impractically slow. The new
option protects against such cases. Enabled for `asm*` and `map-hifi`.

* New feature: added the `map-hifi` preset for maping PacBio High-Fidelity
(HiFi) reads.

* Change to the default: apply `--cap-sw-mem=100m` for genomic alignment.

* Bugfix: minimap2 could not generate an index file with `-xsr` (#734).

This release represents the most signficant algorithmic change since v2.1 in
2017. With features backported from unimap, minimap2 now has similar power to
unimap for contig alignment. Unimap will remain an experimental project and is
no longer recommended over minimap2. Sorry for reverting the recommendation in
short time.

(2.19: 26 May 2021, r1057)

(mef)

2022-03-13 07:31:57 UTC MAIN commitmail json YAML

pkgsrc/math/lapack/distinfo@1.32 / diff
pkgsrc/math/lapack/patches/patch-SRC_CMakeLists.txt@1.4 / diff

Fix lapack parallel build when building both static and shared libs

lapack creates .mod files that are created in the same location
when the static and shared libraries these then interfere with each
other. put the .mod files created when buildling the static library
in a different directory to fix this.

(nros)

2022-03-13 07:19:45 UTC MAIN commitmail json YAML

pkgsrc/doc/TODO@1.21596 / diff

doc/TODO: add some

+ MesaLib-22.0, Sigil-1.9.2, blender-3.1, fontforge-20220308,
git-delta-0.12.1, guile-3.0.8, harfbuzz-4.0.1, ispell-3.4.05,
libbluray-1.3.1, py-pip-audit-2.1.0, tor-browser-11.0.7 [wip],
unifont-14.0.02.

(wiz)

2022-03-13 06:59:31 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1412 / diff
pkgsrc/doc/TODO@1.21595 / diff

doc: Updated converters/opencc to 1.1.3

(mef)

2022-03-13 06:59:19 UTC MAIN commitmail json YAML

pkgsrc/converters/opencc/Makefile@1.5 / diff
pkgsrc/converters/opencc/PLIST@1.3 / diff
pkgsrc/converters/opencc/distinfo@1.8 / diff

(converters/opencc) Updated 1.1.2 to 1.1.3

## Version 1.1.3

2021年9月3日

* 修復部分頭文件不能單獨使用的問題（#550）。
* 修復引入系統pybind11的方法（#566）。
* 支持Node.js 16（#597）。
* 支持Python 3.9（#603）。
* 修正轉換錯誤。
* 若干其他小修復。

(mef)

2022-03-13 06:48:03 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1411 / diff

doc: Updated converters/erlang-iconv to 1.0.13

(mef)

2022-03-13 06:47:52 UTC MAIN commitmail json YAML

pkgsrc/converters/erlang-iconv/Makefile@1.11 / diff
pkgsrc/converters/erlang-iconv/distinfo@1.12 / diff

(converters/erlang-iconv) Updated 1.0.12 to 1.0.13

# Version 1.0.13

* Remove p1_utils dependency
* Parametrize the rebar binary (processone/fast_tls#51)
* Add Github Action to release in hex.pm when tagging
* Switch from Travis to Github Actions

(mef)

2022-03-13 06:44:39 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1410 / diff

doc: Updated lang/rakudo to 2022.02

(mef)

2022-03-13 06:44:28 UTC MAIN commitmail json YAML

pkgsrc/lang/rakudo/Makefile@1.24 / diff
pkgsrc/lang/rakudo/PLIST@1.11 / diff
pkgsrc/lang/rakudo/distinfo@1.17 / diff

(lang/rakudo) Updated 2021.12 to 2022.02

New in 2022.02:

+ Deprecations:

+ Additions:
+ Add support for $RAKUDO_OPT environment variable [e82e6774]
+ Implement sub rotor [90a04ac0]
+ Introducing $*RAT-UPGRADE-CLASS (#4299) [f737b080]
+ Add Cool.Order "coercer" (#4473) [4b2fc66f]
+ Add CI job that runs a spectest instead of Rakudo tests [7ef7b6ed]
+ Add :slip named argument to roundrobin() [de605e84]
+ Add an Any(iterable).infer method (#4626) [4d263779]
+ Add ACCEPTS candidate for Junction to Bool [f21af28e]
+ Add missing checks for nulls [821195b2]
+ Add missing precedence info for some infix ops (#4725) [cd86606e]
+ Add .unique to native arrays [bc8c286f]
+ Add .repeated to native arrays [369093c8]
+ Add .squish to native arrays [284b5623]
+ Finally add in memoriam for David Adler [510c24ed]

+ Removals:
+ Remove uniprop-(int|str|bool) [cc5f17a0] [2b355dc4]
+ Remove check for nullness of descriptor [b2f0a9d2]
+ Remove some no longer needed CALL-MEs [25ca2064]
+ Remove RESTRICTED setting (#3965) [6a8fa2f4]
+ Remove two dummy parameters from (Fat)Rat coercer [6c765609]
+ Remove dead code from MoarVM and JVM extops [e912bf2e][1ba3fe04]
[421dd982][969ae326]

+ Changes:
+ Relax cross-language revision role-class boundaries [d493a051]
+ Get rid of trailing ] and } when dd-ing typed arrays/hashes [49608021]
+ Adapt to nqp::radix(_I)? now returning # chars converted [4a3753fb]
+ Disallow creating Uni with out-of-range codepoints [c56c578c][ef35db06]
+ Make Complex.new about 30x as fast [586f2f3c]
+ Get IO::Path!SET-SELF below inlining limit [4f3ff580][efdc1a9e]
+ $x ** 賊Inf is sometimes 0 (#4226) [03065e29]
+ Make dd output consistent for arrays and hashes [59929f0a]
+ Call .perl(:arglist) for Capture's list elements [27ede8cb]
+ Make class A does B{ } error more awesome [535e0151]
+ Make .WHY on role group delegate to default role [8f989d1a][d3e74427]
[91e3c983]
+ Make set-env.sh script work on MacOS (#4704) [19696916]
+ Protect some typechecks with try [e3f22147][5f843222]
+ Make sure that subclasses of FatRat .raku correctly [d6e6afb0]
+ Make Rat.FatRat about 5x as fast [82afbbf0]
+ Rename Any.infer to Any.are [186bd0b0]
+ Bring Rational.floor/ceiling/round/Int below inlining limit [59ea71f7]
+ Reduce bytecode size of Array[TR].BIND-POS [daeb9915]
+ Make adverbless @a[iterable] about 2.5x as fast [30f1fba3]
+ Make adverbless @a[*] about 20% faster [8ac55c57]
+ Make the adverbless zen-slice (@a[]) a few percent faster [21829c33]
+ Make FatRat.Rat coercion about 6x as fast [2fe1bb85]
+ Bring down bytecode size of nativearray.splice helper [38648b4f]
+ Re-arrange Int.base a bit [4d78bc6a]
+ Make unsuccessful .first about 40% faster [ed99df18]
+ Extract failure creation into separate subs [7dc3add8]
+ Make Capture[n] (and thus $0, $1, ...) about 5x as fast [11c8f82a]
+ Implement smartmatch as a dispatcher [32401c47]
+ Set up nativeref types for unsigned integers [b70d1147]
+ Support primspec 10 for unsigned integers [b092cc6c]
+ Also check iscont_u when looking for native references [2509e183]
+ Support uints as their own argument kind in dispatch [c0fbd367]
+ Use unsigned ops when handling unsigned buffers [63b2b846]
+ New uint candidates for operators [4db92b18]
+ Switch to unsigned ops where appropriate [c38b6b42]
+ Unsigned versions of some iterators [56923c12]
+ uint versions of native arrays [1ef6001f]
+ Bring uint improvements to the JVM [27f3b719]
+ Introduce NYI as a sub (#4716) [94456edf]
+ Make Int.roll/pick act as (^Int).roll/pick on 6.e (#4695) [45090c91]
+ Make Int.roll/pick about 6x as fast in v6.e [6222a14c]
+ Make ^Int:D about 14x as fast [21ee1fa0]
+ Make creation of Int .. Int object about 14x as fast [8fbe6c0a]
+ Specify base of non base 10 invalid numbers (#4717) [522155d5]
+ Further improvements to smartmatch dispatcher [cd20a2bc][6148b75c]
[abfb9f86][2486960b]
+ Do some better job optimizing Junction on RHS [6f925ea2][eba72f4b]
[49955840]
+ Properly support uints in BUILDPLANs [a38bebec]
+ Don't assume "year" as unit [34455138]
+ Use proper unsigned ops for accessing multidim uint arrays [8777e923]
+ Use nqp::istype for nominalizable smartmatch [ef4abcc7]

+ Fixes:
+ Make ranges coerce LHS into a numeric if range boundaries are numeric
[7f73dcbd][dd5fabf9]
+ Many improvements to smartmatching and given/when [d0f2690f][7f1189fe]
[7554d733][80fbaadd][fedfd716][91ec1bbf][5855c1d5][6616440d][9f80771c]
[966e77fe][a1bb638f][ed85bad6][6b828fe6]
+ Fix Map ACCEPTS by collapsing explicit junctions [87621e1a]
+ [JVM] Mention routine in error for wrong arity [522e49a7]
+ Fix the behaviour of Pair ~~ Pair (#4671) [026c51a0]
+ Additional fixes and improvements of smartmatch optimizations [2a3f61ef]
+ Don't use MVM_free if we didn't use MVM_malloc [1b5c0b95]
+ Fix Nil warning in dd [a8498e8a]
+ Fix dd for nameless things [95d60623]
+ Fix potential race condition in Proc::Async start [8321ce10]
+ Test return constraints for role implementors (#3249) [56b57f61]
+ Use simpler code for correct `.length` suggestions test (#4703)
[9310799c]
+ Fix warning in Pod::To::Text signature processing (#3528) [36cee696]
+ Make sure rebuilds of native array will generate ok [21d988d1]
+ Make add_constant lookup setting symbols only [28b51238]
+ Make initialization of core dynamic variables threadsafe [768ebea7]
+ Fix is_array_type on roles [944debd3]
+ Fix writes to native arrays via [] returning arbitrary data [72ef4e4d]
+ Fix "This container does not reference a native unsigned integer"
[3823f88c]
+ Fix "This container does not reference a native integer" in Blob/Buf
[a64c2f55]
+ Fix CArray treating all native integers as signed [fee9e822]
+ Eliminate p6decontrv ops caused by *_u ops [e5b67c1d][b3a71fbc]
+ Fix custom-lib race (#4738) [dab9cd66]
+ Fix method put failing on junctions [e521c8e4]
+ Fix Attribute.(get|set)_value treating uints like str [382f2f10]
+ Add unsigned candidate of +^ (bitwise negation) prefix operator
[ffa09ff6]
+ Fix "Invalid ....BUILDALL plan: 24" error [118a0c3d]
+ Fix Attribute treating all native integers as signed [753c173e]
+ Fix optimizations of smartmatches over subsets [d6fb1919][b9d8aa49]
+ Fix "container does not reference a native integer" in UnsignedBlob.STORE
[14bacc24]
+ Fix "No registered operation handler for 'iseq_u'" [4e1a7721]
+ Fix NativeCall wrongly expecting signed integer for size_t rw args
[c92833f3]
+ Fix UInt where block trying to unbox a Scalar [26215f20]
+ Fix "container does not reference a native integer" with mixed int/uint
multidim array indexes [7cb21467]
+ Fix "container does not reference a native integer" in multi slice
[e4a4a92f]
+ Allow for using uint and int as indexes in native array slice assignment
[a35a7791]
+ Fix precomp file rename race condition [006a920c]
+ Fix X::Method::NotFound on my-classes [8edc6d88]

+ Internal:
+ Replace nqp::attrinited with a descriptor-based approach [425913dc]
[c3448773][13522362][71f8981b][c76c1e64][80f122d1][f96048c1][b6135861]
[bdb0cc23][c719eab8][cd585f9d][8f796f5b][28053bd2][43f4e8a5]

(mef)

2022-03-13 06:26:57 UTC MAIN commitmail json YAML

pkgsrc/mk/compiler/clang.mk@1.35 / diff
pkgsrc/mk/compiler/gcc.mk@1.236 / diff
pkgsrc/mk/cwrappers.mk@1.33 / diff
pkgsrc/mk/wrapper/bsd.wrapper.mk@1.104 / diff

mk: MKPIE is not GCC-specific. Should help ObjC packages.

(nia)

2022-03-13 06:20:13 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1409 / diff

doc: Updated lang/nqp to 2022.02

(mef)

2022-03-13 06:20:03 UTC MAIN commitmail json YAML

pkgsrc/lang/nqp/Makefile@1.38 / diff
pkgsrc/lang/nqp/distinfo@1.21 / diff

(lang/nqp) Updated 2021.12 to 2022.02, explicit ChangeLog unknown

(mef)

2022-03-13 06:09:33 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1408 / diff

doc: Updated devel/MoarVM to 2022.02

(mef)

2022-03-13 06:09:21 UTC MAIN commitmail json YAML

pkgsrc/devel/MoarVM/Makefile@1.35 / diff
pkgsrc/devel/MoarVM/PLIST@1.14 / diff
pkgsrc/devel/MoarVM/distinfo@1.25 / diff

(devel/MoarVM) Updated 2021.12 to 2022.02

New in 2022.02

Core:
+ Assure memory write order in native call race condition fix [4d411987]
+ Use faster itoa implementation [48f584c4]
+ Change nqp::radix(_I)? to return # chars converted [45f40826]
+ Ignore untracked changes in the ryu submodule [f4b4692a]
+ Correctly free memory allocated by libuv [781a4799]
+ Include stdbool.h instead of using our own defines [01c3e8f5]
+ Add bindpos_u op [4b404536]
+ Add atpos_u op [44204e89]
+ HLL uint_box_type [362d465a]
+ uint_*_ref HLL config entries [36ba6133]
+ New set-cur-hll-config-key syscall [28df31bb]
+ New atposref_u op [5abfbcff]
+ Let NativeRefs know if they are unsigned [4e429897]
+ fetch_u operation on containers [e298f6a8]
+ New iscont_u op [0e68f31c]
+ New assign_u op [502cd6fb]
+ captureargpos_u op [7c3ddaee]
+ Teach native_ref_store to distinguish between signed and unsigned ints
[0161b143]
+ Treat MVM_CALLSITE_ARG_(FLAT | NAMED) like FLAT_NAMED [9c2df858]
+ Free up MVM_CALLSITE_ARG_FLAT_NAMED flag [b1069f7c]
+ #include <assert.h> explicitly. [55be3aa2]
+ More preparations for fixing unsigned handling [90b24146][36a5fb4c][171ea9f4]
[3f616d7a][ba8bd0e9][4d003732]
+ Run `git submodule --quiet update --depth 1` if git is new enough. [677d1fd6]
+ Add mimalloc submodule, and default to mimalloc where possible [9f0a3bdb]
[0a8a66d5][8a5be0d9][e7388250][eaaeab54][248aa337][e306759e][1d779128]
+ Make value_desc_cont_atomic_store() static [1351cfe6]
+ Allocations for blocks of MVM registers needs to be 8 byte aligned [1850f91a]
+ Add missing static qualifiers to various private functions [d293c683]
[a641520f][38e66874][da372d13][ef4e19c5][5b477a6a][5e217e03][e0f92ab1]
[86ba1d5e][08bf3b61]
+ Support using C11 atomics as an alternative libatomic_ops [44696884]
[9ff22369][783bb2ac][48c67de8][777a18c4]
+ MVM_nativeref_lex_u for proper gelexref_u* [d4dab6eb]
+ Use appropriate (un)signed container ops for native call args [26e2cfad]
+ Fix argument unboxing treating all integers as signed [9239ed5f]
+ Use MVM_STORAGE_SPEC_BP_UINT64 for unsigned box targets [b34604a6]
+ Properly support uints in CArray [53e588e4]
+ Make C(PP)Struct and CUnion properly support uint attributes [06e1ebe3]
+ Properly support uint in MultiDimArrays [b585b5e3]
+ Fix "Wrong kind of access to numeric CArray" when binding into an uint CArray
[f1101b95]
+ Add an lgtm config file [9fb8ec91]
+ Use libc allocator functions for NativeCall [c6064d3b][2bf083bc][a1749f57]
[26ad34e8][20910161][d39f50d7]
+ Fix segfault in nqp::hllboolfor [6661662d]
+ Move the repeated code that frees callsites before exceptions to a function
[85fa90c4]
+ Fix a bug in `report_deserialize_callsites_violation` [03f023cc]
+ Remove all code for serialization versions earlier than 23 [e80869eb]
+ Remove all code for bytecode versions earlier than 7 [bee95459]
+ Implement unsigned native version of binary not op (bnot_u) [b7d2713b]
+ Teach MVM_dump_p6opaque debug function to dump bigints [a0a98d47]
+ Fix autoboxing of arguments treating unsigned ints as signed [3ff5b111]
+ Fix segfault after capture-replace-literal-arg with different kind [2abb4699]
+ Implement (bind|get)attrs?_u ops [d58fa57d]
+ Implement getattrref_u op [ea644a5b]
+ Fix autobox_uint finding negative Ints in the int cache [a851fcf4]
+ Proper uint support for multidim arrays. [ef270d7f]
+ Silence warning about ignoring return value from libtommath function
[c00abdf3]
+ Fix things found by lgtm.com [42060102][55c83c2a][6d1bd83c][80e262a6]
[94847eda]
+ Fix problems in GCC/GDB plugins found by lgtm.com [3d759ed5][b73b9570]
[de12679a][3773169d][0b16384d]
+ Fix more things found by lgtm.com [58d0d756][d968da89]
+ Make it possible turn dispatcher debugger with compiler options [72b313b2]
+ Fix some missing variable renames in GCC plugin [e58fc6d1]

GC:
+ Fix possible access to fromspace in libffi native calls [38349ce4]
+ Fix possible access to fromspace after deopt materialization [2883ba75]

JIT:
+ Jit iscont_u, missed in the recent uint work [7044d53c]
+ Jit some more missing `*_u` versions of ops [6a404765]

Spesh:
+ Support boxed unsigned int primitives in argument spesh [f12bc422]
+ Fix speshed native calls with rw args assigning into wrong target [d783bf27]
+ Teach optimize_decont about UINT64 box type [4a3b98d5]
+ Fix spesh turning decont of a UIntLexRef into a decont_i [ed3cdd38]
+ Fix spesh breaking non-int/long rw args of native calls [280c709c]

Strings:
+ Simplify MVM_string_utf8_encode_C_string [99e0a715]
+ Change Generate-Collation-Data.raku to use raku binary [1b1b7d59]
+ Manually implement simplified strtoll for coerce_si [b80996ff]
+ Avoid reading beyond the end of the string in MVM_coerce_s_i [ecfc0bc2]
+ Replace locale-"aware" <ctype.h> with ASCII-only code in MVM_coerce_s_i
[596be524]
+ Fix format strings for Win32 + set C99 for MinGW [dd978192]
+ Whoops, fix a wrong format string change [418711f0]

(mef)

2022-03-13 06:02:37 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1407 / diff

doc: Removed graphics/aqsis

(nia)

2022-03-13 06:02:10 UTC MAIN commitmail json YAML

pkgsrc/graphics/Makefile@1.964 / diff
pkgsrc/graphics/aqsis/DESCR deleted
pkgsrc/graphics/aqsis/Makefile deleted
pkgsrc/graphics/aqsis/PLIST deleted
pkgsrc/graphics/aqsis/distinfo deleted
pkgsrc/graphics/aqsis/options.mk deleted
pkgsrc/graphics/aqsis/patches/patch-cmake_modules_FindPNG_cmake deleted
pkgsrc/graphics/aqsis/patches/patch-libs_tex_io_exrinputfile.h deleted

aqsis: remove, marked BROKEN for 2 years

(nia)

2022-03-13 05:49:15 UTC MAIN commitmail json YAML

pkgsrc/print/hplip/PLIST.scan@1.4 / diff

hplip: sort PLIST.scan

(gutteridge)

2022-03-13 05:47:13 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1406 / diff

doc: Updated print/hplip to 3.19.12nb14

(gutteridge)

2022-03-13 05:46:56 UTC MAIN commitmail json YAML

hplip: fix botched patches and qt5 option packaging

When some patches were last updated, some incorrect changes were
inadvertently added. This broke some of the functionality, since there
were hard-coded paths added (e.g., "/usr/pkg/bin/python3.7").

Also fix qt5 option packaging so this actually builds again. There are
still issues that need investigation, but at least an executable can
now run and be interacted with (e.g., attaching as a plugin in Xfce).

(gutteridge)

2022-03-13 04:42:56 UTC MAIN commitmail json YAML

pkgsrc/devel/gettext-tools/msgfmt-desktop.mk@1.2 / diff

gettext-tools: add a to-do explanatory comment

Technically, we would require gettext-tools >= 0.19.7, as that's when
the --xml argument was added, rather than >= 0.15, which the tools
chain currently sets, but this seems non-trivial to adjust.

(gutteridge)

2022-03-13 04:29:25 UTC MAIN commitmail json YAML

pkgsrc/graphics/shotwell/Makefile@1.127 / diff

shotwell: remove block missed in previous commit

(gutteridge)

2022-03-13 04:27:56 UTC MAIN commitmail json YAML

pkgsrc/graphics/gimp-docs-pl/Makefile@1.9 / diff

gimp-docs-pl: replace msgfmt override with msgfmt-desktop.mk

Also make a lintish adjustment while here.

(gutteridge)

2022-03-13 04:19:03 UTC MAIN commitmail json YAML

pkgsrc/print/foliate/Makefile@1.25 / diff

foliate: replace msgfmt override block with msgfmt-desktop.mk

(This expressed the same intended msgfmt override in a different way
than any other package, and so was missed in nia@'s bulk change.)

(gutteridge)

2022-03-13 03:22:37 UTC MAIN commitmail json YAML

pkgsrc/meta-pkgs/mate/Makefile.common@1.14 / diff

mate: replace msgfmt override block with msgfmt-desktop.mk

(gutteridge)

2022-03-12 23:04:47 UTC MAIN commitmail json YAML

gnuradio*: update to 3.10.1.1

Bugfix release for the 3.10.x.y release series.

(tnn)

2022-03-12 21:52:24 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1404 / diff

doc: Updated wm/jwm to 2.4.1

(tsutsui)

2022-03-12 21:52:08 UTC MAIN commitmail json YAML

pkgsrc/wm/jwm/Makefile@1.51 / diff
pkgsrc/wm/jwm/PLIST@1.7 / diff
pkgsrc/wm/jwm/distinfo@1.16 / diff

jwm: update to 2.4.1.

Upstream changes:
https://github.com/joewing/jwm/releases/tag/v2.4.1

What's Changed

* Make JPEG backgrounds not blurry by @shlomif in #530
* Ukrainian translations by @TarasPanchenko in #538
* Middle click close on taskbar by @keshto in #548
* Fix broken text in menu button #534
* Fix crash at startup with floating point exception #537
* Fix icons with a dot (.) in the filename are not found #536
* Fix Alt+tab being assigned even when not assigned in jwmrc #543

New Contributors

* @shlomif made their first contribution in #530
* @TarasPanchenko made their first contribution in #538
* @keshto made their first contribution in #548

(tsutsui)

2022-03-12 21:26:31 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1403 / diff

doc: Updated textproc/lowdown to 0.11.1

(fcambus)

2022-03-12 21:26:19 UTC MAIN commitmail json YAML

pkgsrc/textproc/lowdown/Makefile@1.27 / diff
pkgsrc/textproc/lowdown/distinfo@1.28 / diff

lowdown: update to 0.11.1.

Version 0.11.1, 2022-03-05

- Have -tlatex process header identifiers, both automatically generated
and from PHP extra attributes. Allow linking to these within the document
body.

- Have -tms print that an image happened instead of just omitting it
entirely. It now behaves like -tman in this regard.

- Fix where -tterm would print double-spaces in certain conditions.

- Have extended attribute classes apply as OpenDocument classes in -tfodt.

(fcambus)

2022-03-12 21:16:20 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1402 / diff

doc: Updated cad/klayout to 0.27.8

(mef)

2022-03-12 21:16:08 UTC MAIN commitmail json YAML

pkgsrc/cad/klayout/Makefile@1.46 / diff
pkgsrc/cad/klayout/distinfo@1.22 / diff

(cad/klayout) Updated 0.27.7 to 0.27.8

0.27.8 (2022-02-13):
* Bugfix: %GITHUB%/issues/971 Double compare fails in LVS
* Bugfix: %GITHUB%/issues/972 CIF writer generates unreadable file with invalid cell or layer names
* Bugfix: %GITHUB%/issues/973 Enhanced timeout in package manager on large file download
* Bugfix: %GITHUB%/issues/979 Backup file generation fails with relative paths
* Bugfix: %GITHUB%/issues/982 Heal option for tiled XOR
* Bugfix: %GITHUB%/issues/983 Bug changing PCell parameters of multiple cell instance
* Bugfix: %GITHUB%/issues/984 Crash in debug mode when placing a "slow cell"
* Bugfix: %GITHUB%/issues/994 Loss of selection when clicking at wrong position
To make this problem less annoying, the capture range was increased when
clicking at already selected items for "Move".
* Bugfix: %GITHUB%/issues/995 New top cell appearing after load
* Enhancement: %GITHUB%/issues/996 Refresh function to trigger update from within library
* Bugfix: %GITHUB%/issues/997 Wrong display of negative extensions of paths
* Bugfix: scale and grids were wrong in case of oversampling

(mef)

2022-03-12 17:17:29 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1401 / diff

Update of wordpress

(morr)

2022-03-12 17:16:30 UTC MAIN commitmail json YAML

pkgsrc/www/wordpress/Makefile@1.104 / diff
pkgsrc/www/wordpress/distinfo@1.88 / diff

Security fix for Wordpress.

Fixing 1 bug and 3 security bugs.

More informaton here: https://wordpress.org/support/wordpress-version/version-5-9-2/

(morr)

2022-03-12 14:28:54 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1400 / diff
pkgsrc/sysutils/Makefile@1.1000 / diff
pkgsrc/sysutils/u-boot-rockpro64-ayufan/DESCR deleted
pkgsrc/sysutils/u-boot-rockpro64-ayufan/MESSAGE deleted
pkgsrc/sysutils/u-boot-rockpro64-ayufan/Makefile deleted
pkgsrc/sysutils/u-boot-rockpro64-ayufan/PLIST deleted
pkgsrc/sysutils/u-boot-rockpro64-ayufan/distinfo deleted
pkgsrc/sysutils/u-boot-rockpro64-ayufan/files/installboot.plist deleted
pkgsrc/sysutils/u-boot/distinfo-2020.01.2014 deleted
pkgsrc/sysutils/u-boot/patches-2020.01.2014/patch-arch_arm_lib_interrupts__64.c deleted
pkgsrc/sysutils/u-boot/patches-2020.01.2014/patch-drivers_pci_pcie__rockchip.c deleted

sysutils/u-boot-rockpro64-ayufan: remove in favor of mainline u-boot

(tnn)

2022-03-12 12:36:21 UTC MAIN commitmail json YAML

pkgsrc/textproc/py-libxml2/PLIST@1.8 / diff

py27-libxml2: PLIST catch up with distutils changes in libxml2-2.9.13

(tnn)

2022-03-12 12:03:51 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1399 / diff

doc: Updated pkgtools/pkglint to 21.4.4

(rillig)

2022-03-12 12:03:40 UTC MAIN commitmail json YAML

pkgsrc/pkgtools/pkglint/Makefile@1.713 / diff
pkgsrc/pkgtools/pkglint/PLIST@1.29 / diff

pkgtools/pkglint: update to 21.4.4

Changes since 21.4.3:

Do not install the pkglint source code and libraries since no other tool
uses them.

(rillig)

2022-03-12 08:37:15 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1398 / diff

Updated devel/libuv, www/py-nbclient, www/py-nbconvert, www/py-uvicorn

(adam)

2022-03-12 08:36:40 UTC MAIN commitmail json YAML

pkgsrc/www/py-uvicorn/Makefile@1.30 / diff
pkgsrc/www/py-uvicorn/distinfo@1.27 / diff

py-uvicorn: updated to 0.17.6

0.17.6 - 2022-03-11

Change httptools range to >=0.4.0

(adam)

2022-03-12 08:34:54 UTC MAIN commitmail json YAML

pkgsrc/www/py-nbconvert/Makefile@1.15 / diff
pkgsrc/www/py-nbconvert/PLIST@1.10 / diff
pkgsrc/www/py-nbconvert/distinfo@1.12 / diff

py-nbconvert: updated to 6.4.3

6.4.3
-----
* Remove ipython genutils
* Add section to customizing showing how to use template inheritance

(adam)

2022-03-12 08:31:39 UTC MAIN commitmail json YAML

pkgsrc/www/py-nbclient/Makefile@1.3 / diff
pkgsrc/www/py-nbclient/distinfo@1.3 / diff

py-nbclient: updated to 0.5.13

0.5.13

- Drop ipython_genutils

0.5.12

- Require traitlets>=5.0.0
- Extend the ignored part of IPython outputs

(adam)

2022-03-12 08:27:54 UTC MAIN commitmail json YAML

pkgsrc/devel/libuv/Makefile@1.73 / diff
pkgsrc/devel/libuv/distinfo@1.73 / diff

libuv: updated to 1.44.1

v1.44.1

Important bugs fixed

macos: don't use thread-unsafe strtok()
process: fix hang after NOTE_EXIT

(adam)

2022-03-12 08:05:24 UTC MAIN commitmail json YAML

pkgsrc/graphics/gimp/Makefile@1.356 / diff

gimp: missing tool dependency on xsltproc

(nia)

2022-03-12 08:01:53 UTC MAIN commitmail json YAML

pkgsrc/audio/pulseaudio/Makefile@1.168 / diff
pkgsrc/audio/pulseaudio/hacks.mk deleted
pkgsrc/audio/quodlibet/Makefile@1.17 / diff
pkgsrc/audio/quodlibet/hacks.mk deleted
pkgsrc/audio/sound-juicer/Makefile@1.123 / diff
pkgsrc/audio/sound-juicer/hacks.mk deleted
pkgsrc/audio/speech-dispatcher/Makefile@1.24 / diff
pkgsrc/chat/gajim/Makefile@1.63 / diff
pkgsrc/chat/hexchat/Makefile@1.57 / diff
pkgsrc/chat/srain/Makefile@1.16 / diff
pkgsrc/devel/devhelp/Makefile@1.145 / diff
pkgsrc/devel/gettext-tools/msgfmt-desktop.mk@1.1 / diff
pkgsrc/devel/glade/Makefile@1.104 / diff
pkgsrc/devel/meld/Makefile@1.116 / diff
pkgsrc/editors/dasher/Makefile@1.110 / diff
pkgsrc/editors/dasher/hacks.mk deleted
pkgsrc/editors/gedit/Makefile@1.165 / diff
pkgsrc/editors/gedit/hacks.mk deleted
pkgsrc/editors/ghex/Makefile@1.65 / diff
pkgsrc/editors/ghex/hacks.mk deleted
:
(more 62 files)

*: Replace per-package msgfmt hacks with msgfmt-desktop.mk

(nia)

2022-03-12 07:48:53 UTC MAIN commitmail json YAML

x11: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:44:12 UTC MAIN commitmail json YAML

pkgsrc/www/epiphany/Makefile@1.208 / diff
pkgsrc/www/epiphany/hacks.mk@1.1 / diff

www: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:42:32 UTC MAIN commitmail json YAML

pkgsrc/time/gnome-calendar/Makefile@1.12 / diff
pkgsrc/time/gnome-calendar/hacks.mk@1.1 / diff
pkgsrc/time/gnome-pomodoro/Makefile@1.7 / diff
pkgsrc/time/gnome-pomodoro/hacks.mk@1.1 / diff

time: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:40:48 UTC MAIN commitmail json YAML

pkgsrc/textproc/gnome-dictionary/Makefile@1.7 / diff
pkgsrc/textproc/gnome-dictionary/hacks.mk@1.1 / diff

textproc: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only

(nia)

2022-03-12 07:37:42 UTC MAIN commitmail json YAML

sysutils: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:34:01 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1397 / diff

doc: Updated textproc/py-libxml2 to 2.9.13

(kim)

2022-03-12 07:33:48 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1396 / diff

doc: Updated textproc/libxml2 to 2.9.13

(kim)

2022-03-12 07:33:22 UTC MAIN commitmail json YAML

textproc/libxml2: Update to 2.9.13

NEWS:

v2.9.13: Feb 19 2022:
- Security:
[CVE-2022-23308] Use-after-free of ID and IDREF attributes
(Thanks to Shinji Sato for the report)
Use-after-free in xmlXIncludeCopyRange (David Kilzer)
Fix Null-deref-in-xmlSchemaGetComponentTargetNs (huangduirong)
Fix memory leak in xmlXPathCompNodeTest
Fix null pointer deref in xmlStringGetNodeList
Fix several memory leaks found by Coverity (David King)

- Fixed regressions:
Fix regression in RelaxNG pattern matching
Properly handle nested documents in xmlFreeNode
Fix regression with PEs in external DTD
Fix random dropping of characters on dumping ASCII encoded XML (Mohammad Razavi)
Revert "Make schema validation fail with multiple top-level elements"
Fix regression when parsing invalid HTML tags in push mode
Fix regression parsing public IDs literals in HTML
Fix buffering in xmlOutputBufferWrite
Fix whitespace when serializing empty HTML documents
Fix XPath recursion limit
Fix regression in xmlNodeDumpOutputInternal
Work around lxml API abuse

- Bug fixes:
Fix xmlSetTreeDoc with entity references
Fix double counting of CRLF in comments
Make sure to grow input buffer in xmlParseMisc
Don't ignore xmllint options after "-"
Don't normalize namespace URIs in XPointer xmlns() scheme
Fix handling of XSD with empty namespace
Also register HTML document nodes
Make xmllint return an error if arguments are missing
Fix handling of ctxt->base in xmlXPtrEvalXPtrPart
Fix xmllint --maxmem
Fix htmlReadFd, which was using a mix of xml and html context functions (Finn Barber)
Move current position before possible calling of ctxt->sax->characters (Yulin Li)
Fix parse failure when 4-byte character in UTF-16 BE is split across a chunk (David Kilzer)
Patch to forbid epsilon-reduction of final states (Arne Becker)
Avoid segfault at exit when using custom memory functions (Mike Dalessio)

- Tests, code quality, fuzzing:
Remove .travis.yml
Make xmlFuzzReadString return a zero size in error case
Fix unused function warning in testapi.c
Update NewsML DTD in test suite
Add more checks for malloc failures in xmllint.c
Avoid potential integer overflow in xmlstring.c
Run CI tests with UBSan implicit-conversion checks
Fix casting of line numbers in SAX2.c
Fix integer conversion warnings in hash.c
Add explicit casts in runtest.c
Fix integer conversion warning in xmlIconvWrapper
Add suffix to unsigned constant in xmlmemory.c
Add explicit casts in testchar.c
Fix integer conversion warnings in xmlstring.c
Add explicit cast in xmlURIUnescapeString
Remove unused variable in xmlCharEncOutFunc (David King)

- Build system, portability:
Remove xmlwin32version.h
Fix fuzzer test with VPATH build
Support custom prefix when installing Python module
Remove Makefile.win
Remove CVS and SVN-related code
Port python 3.x module to Windows and improve distutils (Chun-wei Fan)
Correctly install the HTML examples into their subdirectory (Mattia Rizzolo)
Refactor the settings of $docdir (Mattia Rizzolo)
Remove unused configure checks (Ben Boeckel)
python/Makefile.am: use *_LIBADD, not *_LDFLAGS for LIBS (Sam James)
Fix check for libtool in autogen.sh
Use version in configure.ac for CMake (Timothy Lyanguzov)
Add CMake alias targets for embedded projects (Markus Rickert)

- Documentation:
Remove SVN keyword anchors
Rework README
Remove README.cvs-commits
Remove old ChangeLog
Update hyperlinks
Remove README.docs
Remove MAINTAINERS
Remove xmltutorial.pdf
Upload documentation to GitLab pages
Document how to escape XML_CATALOG_FILES
Fix libxml2.doap
Update URL for libxml++ C++ binding (Kjell Ahlstedt)
Generate devhelp2 index file (Emmanuele Bassi)
Mention XML_CATALOG_FILES is space-separated (Jan Tojnar)
Add documentaiton for xmllint exit code 10 (Rainer Canavan)
Fix some validation errors in the FAQ (David King)
Add instructions on how to use CMake to compile libxml (Markus Rickert)

(kim)

2022-03-12 07:28:20 UTC MAIN commitmail json YAML

pkgsrc/security/gcr/Makefile@1.22 / diff
pkgsrc/security/gcr/hacks.mk@1.1 / diff
pkgsrc/security/polkit/Makefile@1.40 / diff
pkgsrc/security/polkit/hacks.mk@1.1 / diff
pkgsrc/security/seahorse/Makefile@1.170 / diff
pkgsrc/security/seahorse/hacks.mk@1.1 / diff

security: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:19:24 UTC MAIN commitmail json YAML

pkgsrc/print/evince3/Makefile.common@1.24 / diff
pkgsrc/print/evince3/hacks.mk@1.1 / diff

evince3: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:17:20 UTC MAIN commitmail json YAML

pkgsrc/multimedia/gnome-video-effects/Makefile@1.3 / diff
pkgsrc/multimedia/gnome-video-effects/hacks.mk@1.1 / diff
pkgsrc/multimedia/handbrake/Makefile@1.73 / diff
pkgsrc/multimedia/handbrake/hacks.mk@1.1 / diff
pkgsrc/multimedia/totem/Makefile@1.121 / diff
pkgsrc/multimedia/totem/hacks.mk@1.1 / diff

multimedia: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:14:17 UTC MAIN commitmail json YAML

pkgsrc/misc/orca/Makefile@1.59 / diff
pkgsrc/misc/orca/hacks.mk@1.1 / diff
pkgsrc/misc/yelp3/Makefile@1.79 / diff
pkgsrc/misc/yelp3/hacks.mk@1.1 / diff

misc: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:11:14 UTC MAIN commitmail json YAML

pkgsrc/inputmethod/ibus-libpinyin/Makefile@1.26 / diff
pkgsrc/inputmethod/ibus-libpinyin/hacks.mk@1.1 / diff
pkgsrc/inputmethod/ibus/Makefile@1.83 / diff
pkgsrc/inputmethod/ibus/hacks.mk@1.1 / diff

inputmethod: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 07:06:27 UTC MAIN commitmail json YAML

graphics: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-12 06:07:59 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1395 / diff

doc: Updated shells/zsh to 5.8.1

(kim)

2022-03-12 06:07:48 UTC MAIN commitmail json YAML

pkgsrc/shells/zsh/Makefile@1.102 / diff
pkgsrc/shells/zsh/distinfo@1.76 / diff

shells/zsh: Update to 5.8.1

Changes between 5.8 and 5.8.1

Incompatibilities

PROMPT_SUBST expansion is no longer performed on arguments to
prompt-expansion sequences such as %F.

Changes

CVE-2021-45444: Some prompt expansion sequences, such as %F,
support 'arguments' which are themselves expanded in case they
contain colour values, etc. This additional expansion would trigger
PROMPT_SUBST evaluation, if enabled. This could be abused to
execute code the user didn't expect. e.g., given a certain prompt
configuration, an attacker could trick a user into executing
arbitrary code by having them check out a Git branch with a
specially crafted name.

This is fixed in the shell itself by no longer performing
PROMPT_SUBST evaluation on these prompt-expansion arguments.

Users who are concerned about an exploit but unable to update their
binaries may apply the partial work-around described in the file
Etc/CVE-2021-45444-VCS_Info-workaround.patch included with the shell
source. [ Reported by RyotaK. Additional thanks to Marc Cornellà. ]

(kim)

2022-03-11 21:42:41 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1394 / diff

doc: updated kicad to 6.0.2

(tnn)

2022-03-11 21:42:15 UTC MAIN commitmail json YAML

kicad*: update to 6.0.2

Maintenance/bugfix release for the 6.0 branch.

(tnn)

2022-03-11 21:37:36 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1393 / diff

doc: updated devel/git-filter-repo, x11/tint2, security/hitch

(tnn)

2022-03-11 21:36:01 UTC MAIN commitmail json YAML

pkgsrc/security/hitch/Makefile@1.19 / diff
pkgsrc/security/hitch/distinfo@1.15 / diff

hitch: update to 1.7.2

Minor bugfixes and build fixes.

(tnn)

2022-03-11 21:33:34 UTC MAIN commitmail json YAML

pkgsrc/x11/tint2/Makefile@1.60 / diff
pkgsrc/x11/tint2/distinfo@1.13 / diff

tint2: update to 17.0.2

The final release of tint2 is 17.0.2.
The code is frozen and no more feature requests are accepted.

Changes:
On dual monitor, when minimizing Chrome window it minimizes on the wrong
monitor panel (issue 818)

(tnn)

2022-03-11 21:28:33 UTC MAIN commitmail json YAML

pkgsrc/devel/git-filter-repo/Makefile@1.4 / diff
pkgsrc/devel/git-filter-repo/distinfo@1.5 / diff

git-filter-repo: update to 2.34.0. Unknown changes.

(tnn)

2022-03-11 21:19:07 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1392 / diff

doc: updated www/varnish, www/grafana, net/synergy, math/volk, devel/git-lfs

(tnn)

2022-03-11 21:17:14 UTC MAIN commitmail json YAML

pkgsrc/devel/git-lfs/Makefile@1.47 / diff
pkgsrc/devel/git-lfs/distinfo@1.12 / diff
pkgsrc/devel/git-lfs/go-modules.mk@1.2 / diff

git-lfs: update to 3.1.2

This release is a major new release and introduces several new features,
such as a pure SSH-based protocol, Git-compatible pattern matching, and
locking multiple files on the command line, among other items.

Backwards-incompatible changes:
NTLM support has been completely removed
When using an SSH URL (that is, the syntax starting with ssh://),
the leading slash is not stripped off when invoking git-lfs-authenticate or
git-lfs-transfer.
git lfs fsck now additionally checks that pointers are canonical and that files
that are supposed to be LFS files actually are. It also exits nonzero if any
problem is found.
Pattern matching should be stricter and should either match the behavior of
.gitattributes or .gitignore, as appropriate. Deviations from Git's behavior
will henceforth be treated as bugs and fixed accordingly.
Git LFS will now write a Git LFS repository format version into the repository.
This is designed to allow future extension with incompatible changes.
Repositories without this version will be assumed to be version 0. Note that
this is different from, but modeled on, Git's repository format version.
git lfs lock and git lfs unlock now handle multiple pathname arguments and the
JSON format has changed to handle multiple responses.
The Go package name now contains a version number. This should have no effect
on users because we don't provide a stable Go ABI.

(tnn)

2022-03-11 20:59:42 UTC MAIN commitmail json YAML

pkgsrc/math/volk/Makefile@1.10 / diff
pkgsrc/math/volk/PLIST@1.4 / diff
pkgsrc/math/volk/distinfo@1.7 / diff
pkgsrc/math/volk/patches/patch-CMakeLists.txt deleted
pkgsrc/math/volk/patches/patch-lib_CMakeLists.txt deleted

volk: update to 2.5.1

Now correctly detects external devel/cpu_features package, so remove
patches for that. Also remove boost dependency since the package was
changed to use C++17 instead of boost.

(tnn)

2022-03-11 20:49:13 UTC MAIN commitmail json YAML

pkgsrc/net/synergy/Makefile@1.72 / diff
pkgsrc/net/synergy/distinfo@1.39 / diff
pkgsrc/net/synergy/patches/patch-src_lib_arch_unix_ArchSystemUnix.cpp@1.2 / diff

synergy: update to 1.14.3.5

- Fix issue with function keys on macOS
- Configure scroll direction on a per-computer basis

(tnn)

2022-03-11 20:46:25 UTC MAIN commitmail json YAML

pkgsrc/www/grafana/Makefile@1.66 / diff
pkgsrc/www/grafana/PLIST@1.19 / diff
pkgsrc/www/grafana/distinfo@1.23 / diff
pkgsrc/www/grafana/go-modules.mk@1.12 / diff

grafana: update to 8.4.3

High level news for 8.4:
- Share playlists
- Accessibility improvements
- New option to configure OpenTelemetry
- Rotate envelope encryption key
- Support for mute timings
- Custom grouping for the Alert Panel
- WeCom contact point
- New panel options

(tnn)

2022-03-11 20:35:40 UTC MAIN commitmail json YAML

pkgsrc/www/varnish/Makefile@1.34 / diff
pkgsrc/www/varnish/distinfo@1.20 / diff

varnish: update to 7.0.2

fix VSV00008 Varnish HTTP/1 Request Smuggling Vulnerability

(tnn)

2022-03-11 19:56:28 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1391 / diff

doc: updated timescaledb, promscale_extension, promscale, prometheus

(tnn)

2022-03-11 19:56:00 UTC MAIN commitmail json YAML

pkgsrc/databases/prometheus/Makefile@1.63 / diff
pkgsrc/databases/prometheus/PLIST@1.13 / diff
pkgsrc/databases/prometheus/distinfo@1.31 / diff
pkgsrc/databases/prometheus/go-modules.mk@1.4 / diff
pkgsrc/databases/prometheus/patches/patch-cmd_prometheus_main.go@1.3 / diff

prometheus: update to 2.33.5

2.33.0 / 2022-01-29
[CHANGE] PromQL: Promote negative offset and @ modifer to stable features.
[CHANGE] Web: Promote remote-write-receiver to stable.
[FEATURE] Config: Add stripPort template function.
[FEATURE] Promtool: Add cardinality analysis to check metrics, enabled by flag --extended.
[FEATURE] SD: Enable target discovery in own K8s namespace.
[FEATURE] SD: Add provider ID label in K8s SD.
[FEATURE] Web: Add limit field to the rules API.
[ENHANCEMENT] Remote-write: Avoid allocations by buffering concrete structs instead of interfaces.
[ENHANCEMENT] Remote-write: Log time series details for out-of-order samples in remote write receiver.
[ENHANCEMENT] Remote-write: Shard up more when backlogged.
[ENHANCEMENT] TSDB: Use simpler map key to improve exemplar ingest performance.
[ENHANCEMENT] TSDB: Avoid allocations when popping from the intersected postings heap.
[ENHANCEMENT] TSDB: Make chunk writing non-blocking, avoiding latency spikes in remote-write.
[ENHANCEMENT] TSDB: Improve label matching performance.
[ENHANCEMENT] UI: Optimize the service discovery page and add a search bar.
[ENHANCEMENT] UI: Optimize the target page and add a search bar.

+ bugfixes

(tnn)

2022-03-11 19:02:49 UTC MAIN commitmail json YAML

pkgsrc/databases/promscale/Makefile@1.27 / diff
pkgsrc/databases/promscale/distinfo@1.12 / diff
pkgsrc/databases/promscale/go-modules.mk@1.8 / diff

promscale: update to 0.10.0

- Improves the metrics system exposed by Promscale
- Includes many bug fixes

(tnn)

2022-03-11 18:47:30 UTC MAIN commitmail json YAML

pkgsrc/databases/postgresql-promscale_extension/Makefile@1.12 / diff
pkgsrc/databases/postgresql-promscale_extension/PLIST@1.5 / diff
pkgsrc/databases/postgresql-promscale_extension/distinfo@1.9 / diff

postgresql-promscale_extension: update to 0.3.2

- Fix search path in update script

(tnn)

2022-03-11 18:35:32 UTC MAIN commitmail json YAML

pkgsrc/databases/postgresql-timescaledb/Makefile@1.13 / diff
pkgsrc/databases/postgresql-timescaledb/PLIST@1.10 / diff
pkgsrc/databases/postgresql-timescaledb/distinfo@1.12 / diff
pkgsrc/databases/postgresql-timescaledb/patches/patch-CMakeLists.txt@1.3 / diff

postgresql-timescaledb: update to 2.6.0

- Continuous aggregates with compression
- time_bucket_ng support for N months and timezones on cont. aggregates
- Query planning performance is improved for hypertables with a large
number of chunks.

(tnn)

2022-03-11 18:26:54 UTC MAIN commitmail json YAML

pkgsrc/graphics/Coin/Makefile@1.33 / diff

graphics/Coin: build without framework support on Darwin.

By default, Coin is installed on Darwin as a framework, which is a completely
different file layout incompatible with pkgsrc. Add a configure argument to
prevent this and select a standard layout compatible with pkgsrc.

(brook)

2022-03-11 18:00:34 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1390 / diff

doc: Updated emulators/xnp2 to 0.86nb13

(ryoon)

2022-03-11 17:59:56 UTC MAIN commitmail json YAML

pkgsrc/emulators/xnp2/Makefile@1.36 / diff

xnp2: Use SDL2

There is no conflict between SDL_mixer and SDL2_mixer anymore.
Bump PKGREVISION.

(ryoon)

2022-03-11 17:12:03 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1389 / diff

doc: Updated net/remmina to 1.4.25

(ryoon)

2022-03-11 17:11:19 UTC MAIN commitmail json YAML

pkgsrc/net/remmina/Makefile@1.74 / diff
pkgsrc/net/remmina/PLIST@1.9 / diff
pkgsrc/net/remmina/distinfo@1.14 / diff

remmina: Update to 1.4.25

Changelog:
1.4.25
appindicator or ayatana-appindicator is now optional, -DHAVE_LIBAPPINDICATOR=OFF will disable the Remmina system tray icon.
pyhoca-cli is needed for the X2Go plugin, -DWITH_X2GO=ON
NX, XDMCP and ST have been removed
Use -DWITH_FREERDP3=ON if you are using the FreeRDP master branch
libsodium is needed to build Remmina.
webkit2gtk3 is needed to build the WWW plugin.
-DWITH_KF5WALLET=ON is a new config option needed for the KWallet plugin (and the required kf5wallet libraries to build it).
News can be turned off with -DWITH_NEWS=OFF\
gtk-vnc is needed for the VNC plugin for GNOME and KVM, -DWITH_GVNC=ON

List of changes:

kiosk: Drop GNOME MediaKeys plugin !2377 @jbicha
Honour soft links target in SFTP !2379 @antenore
Optional close confirmation !2380 @antenore
Fix some build warnings !2382 @donoban
Fix manpages !2378 @Fantu
Snap cleanup + kwallet support !2381 @antenore
Deprecations and amend g_date_time_format_iso8601 !2383 @antenore
Fixes to snap build !2384 @giox069
Removing dependencies that are available as extensions !2385 @antenore
FreeRDP_OffscreenSupportLevel is of type UINT32 !2386 @akallabeth
Minor fixes !2387 @antenore
Get the right value for FreeRDP_AutoReconnectMaxRetries !2388 @antenore

1.4.24
appindicator or ayatana-appindicator is now optional, -DHAVE_LIBAPPINDICATOR=OFF will disable the Remmina system tray icon.
pyhoca-cli is needed for the X2Go plugin, -DWITH_X2GO=ON
NX, XDMCP and ST have been removed
Use -DWITH_FREERDP3=ON if you are using the FreeRDP master branch
libsodium is needed to build Remmina.
webkit2gtk3 is needed to build the WWW plugin.
-DWITH_KF5WALLET=ON is a new config option needed for the KWallet plugin (and the required kf5wallet libraries to build it).
News can be turned off with -DWITH_NEWS=OFF\
gtk-vnc is needed for the VNC plugin for GNOME and KVM, -DWITH_GVNC=ON

List of changes:

Contribution section added to issue template !2365 @kingu
Language of VNC encoding cleaned up !2367 @kingu
Remmina Hardening and Compliance !2366 @antenore
Remmina_preferences language reworked !2368 @kingu
Thanks 2021 !2371 @kingu
Resolve "Follow-up from "Remmina_preferences language reworked"" !2369 @antenore
Encryption level language reworked !2372 @kingu
Issue 2122 : Confirm on close of window !2374 @emmguyot
Adding flush and cairo clean up !2375 @antenore

(ryoon)

2022-03-11 12:38:22 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1388 / diff

Updated www/p5-Session-Storage-Secure to 1.000

(wen)

2022-03-11 12:36:08 UTC MAIN commitmail json YAML

pkgsrc/www/p5-Session-Storage-Secure/Makefile@1.14 / diff
pkgsrc/www/p5-Session-Storage-Secure/distinfo@1.7 / diff

Update to 1.000

Upstream changes:
1.000 2021-03-23 07:51:36-04:00 America/New_York

[!!! Compatibility Notice !!!]

- This version introduces protocol version 2. By default, newly generated
output will be encoded using version 2. Old data created with old
versions of this module will still be readable, whether using the same
secret or the old_secrets array.

- Protocol version 2 key features include: salt length increased to 256
bits and binary encoded; no longer uses a deprecated Crypt::CBC key
derivation function; protocol version appended to the generated output.

[FIXED]

- Protocol version 1 suppresses 'opensslv1' key-derivation function
deprecation warnings from Crypt::CBC.

[PREREQS]

- Requires Crypt::CBC 3.01

0.903 2021-03-22 22:40:21-04:00 America/New_York (TRIAL RELEASE)

0.901 2021-03-22 11:37:09-04:00 America/New_York (TRIAL RELEASE)

(wen)

2022-03-11 11:19:30 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1387 / diff

doc: Updated x11/xlockmore to 5.69

(micha)

2022-03-11 11:18:20 UTC MAIN commitmail json YAML

pkgsrc/x11/xlockmore/Makefile.common@1.84 / diff
pkgsrc/x11/xlockmore/distinfo@1.60 / diff

x11/xlockmore: Update to 5.69

5.69
Patch for xkb groups thanks to Audrey Af, public.irkutsk AT gmail.com.
Minor touches for xscreensaver-6.03 port, life and life3d.

(micha)

2022-03-11 11:10:11 UTC MAIN commitmail json YAML

pkgsrc/games/woof/PLIST@1.8 / diff

games/woof: Sort PLIST

(micha)

2022-03-11 11:07:11 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1386 / diff

doc: Updated games/woof to 9.0.0

(micha)

2022-03-11 11:05:44 UTC MAIN commitmail json YAML

pkgsrc/games/woof/Makefile@1.32 / diff
pkgsrc/games/woof/PLIST@1.7 / diff
pkgsrc/games/woof/distinfo@1.29 / diff

games/woof: Update to 9.0.0

Woof! 9.0.0
-----------
New Features and Improvements
- Integration of Chocolate Doom network code.
- Implement low-res turning (and -shorttics).
- Implement Fluidsynth music backend.
- Additional widget colors options, i.e. "backpack changes thresholds"
and "color of armor depends on type".
- Complete crosshair implementation with 4 different shapes (cross,
angle, dot and big cross), color by player health and highlight on
target.
- Support up to 8 pages of savegames.
- Skip quicksave/quickload questions, allow quickload before quicksave.
- Add IDBEHOLDO cheat to disable all powerups (and invisibility) at
once.
- Import R_ClipWallSegment() function from PrBoom.
- Draw Time widget on intermission screen.
- Add config key and input binding to disable vertical mouse movement
(novert).
- Improve menu legibility for the other three IWADs, i.e. Chex Quest,
HACX and REKKR.
- Properly tab-aligned HU string widgets.
- Generalize the BFG Edition IWAD fixes.
- Implement netgame reload level.
- IDMYPOS prints high precision coordinates.
- Implement render stats cheat.
- Implement BUDDHA cheat and IDDQD after death.
- Implement -coop_spawns parameter.
- Show game speed in the time widget if not 100 pct.
- Missing weapons leave a small gap in the Boom HUD.
- Re-arrange the General menu.
- Always append WAD file name to savegame names, even for IWADs.
- Implement SNDFONT lump.
- Improve fuzzed sprite visibility in hires mode.
- Add umapdef for SIGIL_v1_21.wad.
- Show DMENUPIC if TITLEPIC is unavailable or from the IWAD.

Bug Fixes
- Fix scaled time interpolation.
- Allow the DEH parser to skip blank lines.
- Automap: fix drawing marks > 9.
- Fix player mobj is always in S_PLAY_RUN1 state in complevel boom.
- Initialize certain video parameters only once, e.g. apply scalefactor
from command line only once during initialization.
- Fix display level title in overlay automap mode if STS/Time widget is
on.
- Fix vanilla Doom has at most 10 deathmatch starts.
- Fix menu selection for items with alphaKey == 0.
- Fix total time display on the intermission screen.
- Fix vertical position of the Time/STS widgets.
- Fix levelname on automap screen with Time/STS widget enabled.
- Fix widescreen rendering of shareware HELP2 screen.
- Split dirname and basename at both types of slashes on Windows.
- Fix possible integer overflows in timing functions.
- Fix a potential crash in the demo reel.

(micha)

2022-03-11 10:29:55 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1385 / diff

Updated math/R to 4.1.3

(wen)

2022-03-11 10:27:29 UTC MAIN commitmail json YAML

pkgsrc/math/R/Makefile@1.230 / diff
pkgsrc/math/R/distinfo@1.93 / diff

Update to 4.1.3

Upstream changes:
CHANGES IN R 4.1.3:

NEW FEATURES:

* The default version of Bioconductor has been changed to 3.14.
(This is used by setRepositories and the menus in GUIs.)

UTILITIES:

* R CMD check --as-cran has a workaround for a bug in versions of
file up to at least 5.41 which mis-identify DBF files last
changed in 2022 as executables.

C-LEVEL FACILITIES:

* The legacy S-compatibility macros SINGLE_* in R_ext/Constants.h
(included by R.h) are deprecated and will be removed in R 4.2.0.

BUG FIXES:

* Initialization of self-starting nls() models with initialization
functions following the pre-R-4.1.0 API (without the ...
argument) works again for now, with a deprecation warning.

* Fixed quoting of ~autodetect~ in Java setting defaults to avoid
inadvertent user lookup due to leading ~, reported in PR#18231 by
Harold Gutch.

* substr(., start, stop) <- v now treats _negative_ stop values
correctly. Reported with a patch in PR#18228 by Brodie Gaslam.

* Subscripting an array x without dimnames by a
length(dim(x))-column character matrix gave "random" non-sense,
now an error; reported in PR#18244 by Mikael Jagan.

* ...names() now matches names(list(...)) closely, fixing PR#18247.

* all.equal(*, scale = s) now works as intended when length(s) > 1,
partly thanks to Michael Chirico's PR#18272.

* print(x) for long vectors x now also works for named atomic
vectors or lists and prints the correct number when reaching the
getOption("max.print") limit; partly thanks to a report and
proposal by Hugh Parsonage to the R-devel list.

* all.equal(<selfStart>, *) no longer signals a deprecation
warning.

* reformulate(*, response=r) gives a helpful error message now when
length(r) > 1, thanks to Bill Dunlap's PR#18281.

* Modifying globalCallingHandlers inside withCallingHandlers() now
works or fails correctly, thanks to Henrik Bengtsson's PR#18257.

* hist(<Date>, breaks = "days") and hist(<POSIXt>, breaks = "secs")
no longer fail for inputs of length 1.

* qbeta(.001, .9, .009) and similar cases now converge correctly
thanks to Ben Bolker's report in PR#17746.

* window(x, start, end) no longer wrongly signals "'start' cannot
be after 'end'", fixing PR#17527 and PR#18291.

* data() now checks that its (rarely used) list argument is a
character vector - a couple of packages passed other types and
gave incorrect results.

* which() now checks its arr.ind argument is TRUE rather coercing
to logical and taking the first element - which gave incorrect
results in package code.

* model.weights() and model.offset() more carefully extract their
model components, thanks to Ben Bolker and Tim Taylor's R-devel
post.

* list.files(recursive = TRUE) now shows all broken symlinks
(previously, some of them may have been omitted, PR#18296).

(wen)

2022-03-11 10:22:46 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1384 / diff

doc: Updated textproc/jless to 0.8.0

(pin)

2022-03-11 10:22:27 UTC MAIN commitmail json YAML

pkgsrc/textproc/jless/Makefile@1.6 / diff
pkgsrc/textproc/jless/cargo-depends.mk@1.3 / diff
pkgsrc/textproc/jless/distinfo@1.3 / diff

textproc/jless: update to 0.8.0

This new release of jless ships with two major new features: basic YAML support
and copying to clipboard!

jless will now check the file extension of the input file, and automatically
parse .yml and .yaml files as YAML and use the same viewer as for JSON data.
Alternatively passing in a --yaml flag will force jless to parse the input as
YAML and can be used when reading in YAML data from stdin.
(alias yless="jless --yaml" perhaps?) YAML aliases are automatically expanded,
but their corresponding anchors are not visible, nor are comments. YAML supports
non-string keys, and even non-scalar keys in mappings (e.g., the key of map can
be an array with multiple elements). Non-string keys are shown with square
brackets, e.g., [true]: "value", instead of quotes. Non-scalar keys are handled
on the screen and displayed properly, but you cannot expand and collapse their
individual elements.

While navigating data, jless also now supports copying various items to your
system clipboard.

yy will copy the value of the currently focused node, pretty printed
yv will copy the value of the currently focused node in a "nicely" printed
one-line format
yk will copy the key of the current key/value pair
yp will copy the path from the root JSON element to the currently focused
node, e.g., .foo[3].bar
yb functions like yp, but always uses the bracket form for object keys,
e.g., ["foo"][3]["bar"], which is useful if the environment where you'll
paste the path doesn't support the .key format, like in Python
yq will copy a jq style path that will select the currently focused node,
e.g., .foo[].bar

This release also includes a couple of new movement commands, and some stability
fixes. The full list of changes can be seen below.
Full list of changes
New features:

Support displaying YAML files with autodetection via file extension, or
explicit --yaml or --json flags.
Support copying values (with yy or yv), object keys (with yk), and paths to
the currently focused node (with yp, yb or yq).
Implement ctrl-u and ctrl-d commands to jump up and down by half the
screen's height, or by a specified number of lines.
Implement ctrl-b and ctrl-f commands for scrolling up and down by the height
of the screen. (Aliases for PageUp and PageDown)

Improvements:

Keep focused line in same place on screen when toggling between line and
data modes; fix a crash when focused on a closing delimiter and switching to
data mode.
Pressing Escape will clear the input buffer and stop highlighting search
matches.

Bug Fixes:

Ignore clicks on the status bar or below rather than focusing on hidden
lines, and don't re-render the screen, allowing the path in the status bar
to be highlighted and copied.
Issue #61: Display error message for unrecognized CSI escape sequences and
other IO errors instead of panicking.
Issue #62: Fix broken window resizing / SIGWINCH detection caused by
clashing signal handler registered by rustyline.
PR #54: Fix panic when using Ctrl-C or Ctrl-D to cancel entering search
input.

Other Notes:

Upgraded regex crate to 1.5.5 due to CVE-2022-24713. jless accepts and
compiles untrusted input as regexes, but you'd only DDOS yourself, so it's
not terribly threatening vulnerability.

(pin)

2022-03-11 10:21:43 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1383 / diff

doc: Updated shells/starship to 1.4.2

(pin)

2022-03-11 10:21:21 UTC MAIN commitmail json YAML

pkgsrc/shells/starship/Makefile@1.11 / diff
pkgsrc/shells/starship/cargo-depends.mk@1.9 / diff
pkgsrc/shells/starship/distinfo@1.12 / diff

shells/starship: update to 1.4.2

v1.4.2 (2022-03-10)
Bug Fixes
install: Add -o flag to unzip to match tar (#3727)

Code Refactoring
install: remove trailing slash from BIN_DIR (#3723)

v1.4.1 (2022-03-09)
Build
bump regex from 1.5.4 to 1.5.5 (#3712)
Add /starship.exe.manifest to Cargo.toml include (#3713)

Continuous Integration
Correct dependencies for deploy workflow (#3724)

(pin)

2022-03-11 09:01:02 UTC MAIN commitmail json YAML

pkgsrc/fonts/fontforge/Makefile@1.124 / diff
pkgsrc/fonts/fontforge/hacks.mk@1.4 / diff

fonts: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-11 08:59:27 UTC MAIN commitmail json YAML

pkgsrc/editors/dasher/Makefile@1.109 / diff
pkgsrc/editors/dasher/hacks.mk@1.1 / diff
pkgsrc/editors/gedit/Makefile@1.164 / diff
pkgsrc/editors/gedit/hacks.mk@1.1 / diff
pkgsrc/editors/ghex/Makefile@1.64 / diff
pkgsrc/editors/ghex/hacks.mk@1.1 / diff

editors: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-11 08:56:02 UTC MAIN commitmail json YAML

audio: Use hacks.mk to avoid NetBSD msgfmt on NetBSD only.

(nia)

2022-03-11 07:45:02 UTC MAIN commitmail json YAML

pkgsrc/sysutils/nautilus/distinfo@1.58 / diff
pkgsrc/sysutils/nautilus/patches/patch-data_meson.build@1.1 / diff

nautilus: fix building with latest meson

(nia)

2022-03-11 07:39:25 UTC MAIN commitmail json YAML

pkgsrc/meta-pkgs/bulk-test-boost/Makefile@1.10 / diff

bulk-test-boost: +quassel

(nia)

2022-03-11 07:37:41 UTC MAIN commitmail json YAML

pkgsrc/x11/gnome-shell/distinfo@1.6 / diff
pkgsrc/x11/gnome-shell/patches/patch-data_meson.build@1.1 / diff
pkgsrc/x11/gnome-shell/patches/patch-src_calendar-server_meson.build@1.1 / diff

gnome-shell: fix build with latest meson

(nia)

2022-03-11 07:13:12 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1382 / diff

Updated devel/egypt to 1.11

(gson)

2022-03-11 07:10:40 UTC MAIN commitmail json YAML

pkgsrc/devel/egypt/Makefile@1.7 / diff
pkgsrc/devel/egypt/distinfo@1.4 / diff

devel/egypt: update to 1.11.

Changes from 1.10:

Miscellaneous bug fixes.

New command line option --cluster-by-file.

New command line options --callees and --callers.

Support omitting external functions using the --omit option.

Support new RTL dump function comment syntax of gcc versions 7 and 10.

New command line option --summarize-callers.

(gson)

2022-03-11 00:33:25 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1381 / diff

doc: Updated pkgtools/pkglint to 21.4.3

(rillig)

2022-03-11 00:33:12 UTC MAIN commitmail json YAML

pkgsrc/pkgtools/pkglint/Makefile@1.712 / diff
pkgsrc/pkgtools/pkglint/files/package.go@1.105 / diff
pkgsrc/pkgtools/pkglint/files/package_test.go@1.90 / diff

pkgtools/pkglint: update to 21.4.3

Changes since 21.4.2:

In simple Makefiles, do not allow the GitHub variables like
GITHUB_RELEASE to occur above DISTNAME anymore. Previously, these
variables had 2 possible places in the "canonical" order.

(rillig)

2022-03-10 23:50:46 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1380 / diff

doc: Added sysutils/py-notify2 version 0.3.1

(gutteridge)

2022-03-10 23:49:17 UTC MAIN commitmail json YAML

pkgsrc/sysutils/Makefile@1.999 / diff

sysutils/Makefile: add py-notify2

(gutteridge)

2022-03-10 23:48:02 UTC MAIN commitmail json YAML

pkgsrc/sysutils/py-notify2/DESCR@1.1 / diff
pkgsrc/sysutils/py-notify2/Makefile@1.1 / diff
pkgsrc/sysutils/py-notify2/PLIST@1.1 / diff
pkgsrc/sysutils/py-notify2/distinfo@1.1 / diff

py-notify2: add new package, version 0.3.1

A modern Python interface to DBus notifications, supporting Python 3.
This effectively replaces what was once called "py-notify" in pkgsrc,
and then became "py-notify-python". It is actually required by
print/hplip, if the qt5 option is enabled (which I am working on
fixing).

(There is also a completely unrelated package as sysutils/py-notify at
present, co-incidentally also at version 0.3.1, which apparently was
mistakenly imported overtop the original py-notify, but is not the same
package at all: it should have been placed in devel, not sysutils, as
it doesn't deal with notifications integration but rather with general
development abstractions.)

Originally packaged in wip by K.I.A. Derouiche. Minor adjustments for
pkgsrc and a correction (missing py-dbus dependency) by me.

(gutteridge)

2022-03-10 22:08:35 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1379 / diff

doc: fix the dates of two entries

(gutteridge)

2022-03-10 21:28:30 UTC MAIN commitmail json YAML

pkgsrc/doc/CHANGES-2022@1.1378 / diff

doc: Updated www/epiphany to 40.6

(prlw1)

2022-03-10 21:28:03 UTC MAIN commitmail json YAML

pkgsrc/www/epiphany/Makefile@1.207 / diff
pkgsrc/www/epiphany/PLIST@1.44 / diff
pkgsrc/www/epiphany/distinfo@1.61 / diff
pkgsrc/www/epiphany/patches/patch-data_meson.build@1.1 / diff
pkgsrc/www/epiphany/patches/patch-lib_ephy-sync-utils.c@1.2 / diff

Fix build with meson >= 0.61

Update epiphany to 40.6

Two year's worth of development, bug fixes and translation updates.

Note:

The Safe Browsing phishing protection feature is now disabled by
default (#682) to comply with changes to Google's terms of service,
which now prohibit inclusion of API keys in open source projects.

For details, see:
https://gitlab.gnome.org/GNOME/epiphany/-/blob/40.6/NEWS

(prlw1)