(www/wiliki) regen PLIST, set LICENSE to mit

(mef)

news/pan: Use a proper release tarball rather than a gitlab snapshot.

It also has the autotools files and po/* files already created, and
some files used for testing are left out.

(rhialto)

cheese: mark BROKEN pending more round tuits

(nia)

fuse-ntfs-3g: avoid running ldconfig to help with unprivileged builds on arm

(nia)

retroarch: assume neon is available on armv7

(nia)

openjk: Cope with NetBSD calling 32-bit arm earm.

(nia)

ioquake3: set COMPILE_ARCH to QUAKE_ARCH to avoid compilation problems

(nia)

libretro-pcsx-rearmed: on armv7, make sure the compiler is running in neon mode

(nia)

(sysutils/u-boot-pinephone) add distinfo

(mef)

(news/pan) regen distinfo w/DIST_SUBDIR set, another problem yet

(mef)

typo in error message

(dholland)

devel/boost-libs: fix libbacktrace logic

This avoids calling the compiler and the barrier in the Makefile which
broke build for some folks. If libbacktrace-related files appear, they
are automatically included in PLIST. This depends on a detail of the
external toolchain (e.g. on Ubuntu) which may or may not include
libbacktrace.

(thor)

borgbackup: make py-packaging a full dependency.

Also add syncfilerange.so to Linux PLIST. Bump revision.

From Matthias Ferdinand in private email. Thanks!

(bsiegert)

doc/TODO: + MesaLib-21.2.2.

(wiz)

(multimedia/gst-plugins0.10-bad) Correct wording, + version info

(mef)

doc: Updated shells/nushell to 0.37.0nb3

(pin)

shells/nushell: enable nu_plugin_textview

This is the last plugin belonging to core.
I'll keep testing the other plugins after the freeze.

(pin)

librsvg: apply band-aid for build breakage with rust-1.54.0 on aarch64

Tested on NetBSD/aarch64 and macOS/aarch64

(tnn)

doc: Updated lang/php74 to 7.4.24

(taca)

lang/php74: update to 7.4.24

This is security release fixing CVE-2021-21706.

23 Sep 2021, PHP 7.4.24

- Core:
  . Fixed bug #81302 (Stream position after stream filter removed). (cmb)
  . Fixed bug #81346 (Non-seekable streams don't update position after write).
    (cmb)
  . Fixed bug #73122 (Integer Overflow when concatenating strings). (cmb)

-GD:
  . Fixed bug #53580 (During resize gdImageCopyResampled cause colors change).
    (cmb)

- Opcache:
  . Fixed bug #81353 (segfault with preloading and statically bound closure).
    (Nikita)

- Shmop:
  . Fixed bug #81407 (shmop_open won't attach and causes php to crash). (cmb)

- Standard:
  . Fixed bug #71542 (disk_total_space does not work with relative paths). (cmb)
  . Fixed bug #81400 (Unterminated string in dns_get_record() results). (cmb)

- SysVMsg:
  . Fixed bug #78819 (Heap Overflow in msg_send). (cmb)

- XML:
  . Fixed bug #81351 (xml_parse may fail, but has no error code). (cmb, Nikita)

- Zip:
  . Fixed bug #81420 (ZipArchive::extractTo extracts outside of destination).
    (CVE-2021-21706) (cmb)

(taca)

courier: fix a typo and add an explanatory comment (NFC)

That dependency should probably just be removed, but follow the intent
of the previous commit for now.

(gutteridge)

openscad: Use rm instead of unlink.

(nia)

openscad: uses hicolor-icon-theme

(nia)

doc: Updated lang/php80 to 8.0.11

(taca)

lang/php80: update to 8.0.11

* pkgsrc change: fix PLIST problem when php-embed PKG_OPTIONS is enabled.
* This release conintas security fix for CVE-2021-21706.

23 Sep 2021, PHP 8.0.11

- Core:
  . Fixed bug #81302 (Stream position after stream filter removed). (cmb)
  . Fixed bug #81346 (Non-seekable streams don't update position after write).
    (cmb)
  . Fixed bug #73122 (Integer Overflow when concatenating strings). (cmb)

-GD:
  . Fixed bug #53580 (During resize gdImageCopyResampled cause colors change).
    (cmb)

- Opcache:
  . Fixed bug #81353 (segfault with preloading and statically bound closure).
    (Nikita)

- Shmop:
  . Fixed bug #81407 (shmop_open won't attach and causes php to crash). (cmb)

- Standard:
  . Fixed bug #71542 (disk_total_space does not work with relative paths). (cmb)
  . Fixed bug #81400 (Unterminated string in dns_get_record() results). (cmb)

- SysVMsg:
  . Fixed bug #78819 (Heap Overflow in msg_send). (cmb)

- XML:
  . Fixed bug #81351 (xml_parse may fail, but has no error code). (cmb, Nikita)

- Zip:
  . Fixed bug #80833 (ZipArchive::getStream doesn't use setPassword). (Remi)
  . Fixed bug #81420 (ZipArchive::extractTo extracts outside of destination).
    (cmb)

(taca)

doc: Updated audio/termusic to 0.3.13

(pin)

audio/termusic: update to 0.3.13

-New: mpris support(optional). use "make mpris" to compile and install it.
-Show a message when start playing a song.
-Remove the usage of msgbox component and use paragraph instead.

While here remove dependency on openssl which, was actually remove on 0.3.12

(pin)

doc: Updated lang/php73 to 7.3.31

(taca)

lang/php73: update to 7.3.31

This is security release fixing CVE-2021-21706.

23 Sep 2021, PHP 7.3.31

- Zip:
  . Fixed bug #81420 (ZipArchive::extractTo extracts outside of destination).
    (cmb)

(taca)

(multimedia/gst-plugins0.10-bad) Adhoc fix for \#include line problem

# really adhoc fix
# intention is that the file gst-libs/gst/interfaces/photography-enumtypes.c
# has the line
#    #include "photography.h"
# instead of
#  \#include "photography.h"
# To do that, modify generating Makefile to insert sed command.
# It may be some problems on glib-mkenums (in glib2-tools)

(mef)

(doc/TODO) +gli2-2.70.0, + gli2-tools-2.70.0

(mef)

doc: Updated shells/nushell to 0.37.0nb2

(pin)

shells/nushell: enable nu_plugin_inc

(pin)

gcc10: allow builds on Darwin 21

(adam)

py-gevent: another PLIST fix for Python 2.7

(adam)

opencv-contrib-face: regen distinfo

new patches were added to opencv

(wiz)

R-Cairo: remove patch that was removed from distinfo during update

(wiz)

amazon-ecs-cli: fix builds with recent Go versions

This package (which hasn't had a subsequent release from upstream) will
no longer build when being treated as a "module" by recent Go versions
(and related pkgsrc definitions). It seems non-trivial to address this
(simply trying to add go.mod and such then leads to other errors, e.g.,
recent Go objecting to API versioning practices in code bundled by
upstream), so to get this building again for now, use the old "package"
approach instead.

(gutteridge)

(meta-pkgs/courier) Removed maildrop, it seems already included

remove maildrop, as log says:
  pkg_add: install script returned error status
  pkg_add: package `maildrop-3.0.0nb6' was already installed as dependency

(mef)

(databases/sqlrelay-nodejs) +net/libcares/buildlink3.mk, another problem yet

(mef)

Needs gsed to build on HEAD
PR pkg/56411 also apply, so pretend that eventfd support is not there.
To be revisited after the freeze.

(bouyer)

Stopgap for PR pkg/56411: pretend that eventfd support is not there.
To be revisited after the freeze.

(bouyer)

libepoll-shim: Fix PLIST variable condition.

(nia)

(misc/kalzium) Fix build by removing ocaml/buildlink3.mk, correct ?

(mef)

doc: Updated security/pam-u2f to 1.1.1

(nia)

pam-u2f: security update to 1.1.1

* Version 1.1.1 (released 2021-05-19)
** Fix an issue where PIN authentication could be bypassed (CVE-2021-31924).
** Fix an issue with nodetect and non-resident credentials.
** Fix build issues with musl libc.
** Add support for self-attestation in pamu2fcfg.
** Fix minor bugs found by fuzzing.

(nia)

opencv: Fix netbsd-8 build failure. Still does not link, due to libstdc++

(nia)

melonds: Requires EGL support in Mesa

(nia)

stella: raise gcc requirement

(nia)

firefox*: remove unhelpful workaround for netbsd-8

(nia)

py-approvaltests: fix PLIST

(adam)

ckmame: Set GCC_REQD, does not build with netbsd-9 system compiler.

(nia)

openmsx: fix required gcc version

(nia)

net-snmp: allow build on newer Darwin; fix #55927

(adam)

py-gevent: fix PLIST for Python 2.7

(adam)

ncmpc: avoid compilation problem on netbsd-8

(nia)

inkscape: update GCC_REQD

(nia)

(emulators/simulavr) build fix, adjust include dir etcr

(mef)

(cross/avr-binutils) emulator/simulavr wants diagnostics.h

(mef)

(editors/codelite) Fix build. +include net/libcares/buildlink3.mk

(mef)

(cross/avr-binutls, emulater/simulvar) Fix libiberty issue

(mef)

py-esptool: fix DEPENDS line

(wiz)

(textproc/R-DT) fix build +DEPENDS+= R-jquerylib

(mef)

(math/R-pbkrtest) Fix build, +DEPENDS+=  R-knitr

(mef)

csmith: remove references to non-existent file

Not sure how that crept in...

(wiz)

comms/py-esptool: Add BUILD-DEPENDS on py-wheel

By inspection, setup.py requires py-wheel at build time.

No PKGREVISION++ as either this built and is the same, or didn't use
to build.

(gdt)

libepoll-shim: Support NetBSD with eventfd(2)/timerfd(2)

* Simplify logics in Makefile.
* Exclude eventfd.h for NetBSD with eventfd(2).
* Exclude timerfd.h for NetBSD with timerfd(2).

(ryoon)

imlib: Fix build

(ryoon)

Updated sysutils/xenkernel413 to 4.13.4
Updated sysutils/xentools413 to 4.13.4

(bouyer)

Update xenkernel413 and xentools413 to 4.13.4.
CHANGES are bugfixes, including fixes for XSA up to XSA-384

(bouyer)

Updated sysutils/xenkernel415 to 4.15.1
Updated sysutils/xentools415 to 4.15.1

(bouyer)

Update xenkernel415 and xentools415 to 4.15.1.
32bits PV guests are now unsupported security-wise, and upstream disables
them by default. This packages keep the support enabled for transition, but
this will change for the next quarter branch. It is recommended to switch to
pvh+pvshim for PV guests (or pvh if you run netbsd-current).
Other changes are bugfixes, including fixes for XSA up to XSA-384

(bouyer)

doc: Updated shells/nushell to 0.37.0nb1

(pin)

shells/nushell: enable nu_plugin_tree

(pin)

ruby-nokogiri: Work around ARFLAGS bug on SunOS.

This can be removed once bootstrap-mk-files is fixed after the freeze and when
it's likely that most users have switched to a newer bootstrap.

(jperkin)

Added geography/R-spatstat.geom version 2.2.2 tks wiz@

(mef)

geography/Makefile: add missing subdirectory

(wiz)

doc: Updated sysutils/dust to 0.7.5

(pin)

sysutils/dust: update to 0.7.5

-bugfix: Allow dust to work on low width terminal

(pin)

gnome-desktop: Update x11/gnome-desktop3 to 40.4

============
Version 40.4
============

- No changes

(cirnatdan)

doc: Updated devel/py-approvaltests to 2.1.0

(schmonz)

Update to 2.1.0. From the changelog:

- verify_as_json can now take an optional parameter
  deserialize_json_fields which if True will produce nicer
  formatted output.

Updating this leaf during the freeze as it's well covered by automated
tests and no instability is expected.

(schmonz)

lldb: add missing patch

(adam)

(math/R-maps) Removed duplicating with geography/R-maps

(mef)

doc: Updated geography/R-stars to 0.5.3

(mef)

(geography/R-stars) Updated 0.4.3 to 0.5.3

# version 0.5-3

* `read_stars()` accepts a function (or list with functions) as first argument,
  allowing for saving `stars` objects that read from package directories resolving
  platform-dependent paths at run-time

* handle categorical rasters starting at value 0 (by adding 1, and warning); #428

* add `%in%` method; #424

* `read_stars` gains an argument `tolerance` to control tolerance in
  dimension value comparisons; #414

* binary Ops (like `+`, `-`, `*` etc.) work for `stars_proxy` objects; #390

* `st_rasterize` rasterizes multiple attributes, and handles factors
  (when sf >= 0.9-9)

* `write_stars` deals better with `stars_proxy` objects; #404

* fix regression in reading some `stars_proxy` objects; #379

* add `[<-` (partially) and `is.na` methods for `stars_proxy` objects; #402

* add `replace_na` methods; #402

# version 0.5-2

* read and write factor levels as GDAL category names; write color table; #392

* handle `normalize_path` for choosing to `proxy`; #391

* ignore units when there are different units accross bands of a subdataset

* speed up `st_rgb` using faster `st_apply` approach; #315, #390

* improve handling of crs in Spatial objects (avoid loss of wkt comments)

* correctly write band subsets for smaller proxy objects; #291

* write arbitrarily cropped proxy objects; #291

* speed up `st_apply` when a function is provided that works on chunks
  at a time; #390

* warn when breaks = "quantile" results in a single class; #388

* fix `[` bug selecting bands in proxy objects; #388

* for `stars_proxy` objects, `write_stars` writes all objects into a
  multi-layer file; #385

* multi-file proxy objects can be `st_warp`ed with `use_gdal = TRUE`; #385

# version 0.5-1

* fix weird GDAL-related bug in stars2 vignette

* `read_ncdf` does not take time as mid-points of regular intervals,
  but as starting points; #378

# version 0.5-0

* fix handling of rasters with color tables; #375

* `st_apply` and other methods for `stars_proxy` objects handle ... ; #374

* add `st_bbox`, `st_crs` methods for terra's `SpatVector` objects;
  https://github.com/mtennekes/tmap/issues/536

* add `st_bbox`, `st_crs` and `st_as_stars` methods for terra's
  `SpatRaster` objects; https://github.com/mtennekes/tmap/issues/536

* allow for multi-resolution attributes in `stars_proxy` objects
  (e.g., all gray scale sentinel-2 bands); see vignettes 2 and 7 for
  examples.

* `plot` defaults to a categorical color scale when plotting a factor
  variable; https://github.com/mtennekes/tmap/issues/526

* `st_extract` extracts space-time points if `time_column` is
  specified, and handles time intervals; #352

* add `[[<-.stars` method, which is now called by `$<-.stars`, so that
  array names can be set programmatically

* add `transmute` methods

* `plot.stars` calls `droplevels` if a factor array has any `NA` levels; #339

* `read_stars` reads `NaN`s as `NA`; #333

* improve `st_extract` method for both `stars` and `stars_proxy`
  objects; interpolation options are reduced to bilinear; #322, #279,
  #290

* better handle categorical rasters that do not start at value 1; #329

* plot layout can be controlled with `mfrow = c(nr, nc)` argument

* `stars_proxy` objects have a normalized path; #331

* cropping or selecting with `bbox` treats cells always as small
  polygons; #330

* add faster `st_extract` method for `stars` objects; #322

* added vignette: "How `raster` functions map to `stars` functions",
  by Sebastien Rochette; #122, #325

* fix bug in dimension `values` field when downsampling; #324

* `write_stars` also writes out band names; #323

* add `rgdal` to Suggests:

* each `call_list` entry of a `stars_proxy` object carries its proper
  calling environment; #309

* `st_as_sf.stars` copes with zero attribute (empty) stars objects

* add `st_set_bbox` generic, to set raster extent, motivated by #315

* set up tic, with great help from @pat-s, #313

* get rid of more `proj4string`s for representing coordinate reference
  systems; #312

* as(x, "Spatial") correctly handles `from` dimension values different
  from one

* `read_stars` now sets the `BANDNAME` GDAL metadata item, or else the
  band's GetDescription() as the band's dimension values

* `st_as_stars.data.frame` reads simple tables (non-raster data) if
  `dims` has length less than 2

* band descriptions are in the band dimension values

* dimension tables are simpler, and are shown properly in Rstudio

* `st_rgb` gains a `probs` argument, to cut off and stretch based on
  quantiles

* `as(x, "Raster")` merges multiple attributes before converting to
  raster brick

(mef)

doc: Updated geography/R-raster to 3.4.13

(mef)

(geography/R-raster) Updated 3.0.12 to 3.4.13

(From: NEWS)

--- 17-July-2020, version 3.3-13

overhaul of crs to be ready for PROJ6
several bug fixes (see https://github.com/rspatial/raster/issues?q=is%3Aissue+)

--- 18-April-2020, version 3.1-5
improvements:

new arguments "smin", "smax" and "samplesize" to "stretch"; and bug
fixes. See https://github.com/rspatial/raster/issues/70

layer names in GTiff files are now read from file. Requested by Kyle Taylor
https://github.com/rspatial/raster/issues/88

bug fixes:

parallel version of extract with polygons and "fun" messed up the
order of the values (reported by
Jacory). https://github.com/rspatial/raster/issues/79

raster::predict bug when using factors (reported by
vvirkki). https://github.com/rspatial/raster/issues/73

distanceFromPoints with large files:
https://github.com/rspatial/raster/issues/103

colortable lost when cropping RasterBrick:
https://github.com/rspatial/raster/issues/105

Error in stack() when providing both bands and varname:
https://github.com/rspatial/raster/issues/97

rasterize and multi-polygon containing hole: https://github.com/rspatial/raster/issues/93

Upside down raster: https://github.com/rspatial/raster/issues/95 (a
warning is given, not really fixed yet)

Extract to data.frame bug:
https://stackoverflow.com/questions/61174280/r-rasterextract-fails-to-create-data-frame

(mef)

doc: mention freeze start

(wiz)

doc: Updated geography/R-osmdata to 0.1.6

(mef)

(geography/R-osmdata) Updated 0.1.3 to 0.1.6

0.1.5.00X
===================

Major changes:

- New function `add_osm_features` to enable OR-combinations of features in
  single queries.

0.1.5
===================

Minor changes:

- Bug fix in `getbb()` via #232, thanks to @changwoo-lee
- hard-code WKT string for EPSG:4326, to avoid obsolete proj4strings (#218)
- bug fix in `print` method via #236; thanks to @odeleongt

0.1.4
===================

Major changes:

- New `osm_enclosing()` function; thanks to @barryrowlingson via #199
- `opq()` now has additional `datetime` and `datetime2` parameters which can be
  used to extract historical data prior to `datetime`, or differences between
  two datetimes by specifying `datetime2`; thanks to @neogeomat for the idea in
  issue#179.
- opq() also has additional `nodes_only` parameter to return nodes as points
  only, for efficient extraction of strictly point-based OSM data; thanks to
  @gdkrmr for the idea in issue#221.

Minor changes:

- New contributor Enrico Spinielli (@espinielli), via #207, #210, #211, #212 - Thanks!

(mef)

doc: Updated geography/R-spatstat to 2.2.0

(mef)

(geography/R-spatstat) (was) Updated 1.63.2 to 2.2.0. ChangeLog attached, sorry

        CHANGES IN spatstat VERSION 2.2-0

OVERVIEW

    o We thank Warick Brown, Achmad Choiruddin, Jean-Francois Coeurjolly,
    Andrea Gilardi, Yongtao Guan, Abdollah Jalilian, Hank Stevens
    and Rasmus Waagepetersen for contributions.

    o Conditional simulation in kppm.

    o Simulation of the product shot noise Cox process.

    o Information criteria for model selection in kppm

    o Estimation of the spatial covariance function of a pixel image

    o Modified handling of covariates in slrm

    o Buffer tessellation

    o New function for jittering point patterns on a network.

    o Extensions to 'rhohat'

    o densityfun.ppp handles query points outside original window

    o Extension to 'discretise'.

    o Improvement to densityEqualSplit

    o summary method for spatial logistic regression models

    o New options for distmap.psp

    o Improved output in summary.mppm

    o Bug fix in nncross

    o Bug fix in density.lpp

NEW FUNCTIONS

    o bufftess
    Distance buffer tessellation

    o ic
    Information criteria for model selection in ppm and kppm.
    Kindly contributed by Achmad Choiruddin, Jean-Francois Coeurjolly
    and Rasmus Waagepetersen.

    o rPSNCP
    Generate simulated realisations of the product shot noise Cox process.
    Contributed by Abdollah Jalilian, Yongtao Guan and Rasmus Waagepetersen.

    o spatcov
    Estimate the spatial covariance function of a pixel image.

    o summary.slrm, print.summary.slrm
    Summary method for spatial logistic regression models

    o coef.summary.slrm
    Print the fitted coefficients, confidence interval and p-values
    for a spatial logistic regression model.

    o pairMean
    Compute the mean of a specified function of interpoint distance
    between random points in a window.

    o rjitterlpp
    Apply random displacements to the points on a linear network.

SIGNIFICANT USER-VISIBLE CHANGES

    o simulate.kppm
    Conditional simulation of the model, given a fixed number of points,
    is now supported using the new arguments 'n.cond' and 'w.cond'.

    o densityfun.ppp
    The resulting function can now handle query points which lie
    outside the window of the original data,
    and has argument 'drop=TRUE' which specifies how to handle them.

    o rpoint
    New argument 'forcewin' forces the code to use the window 'win'
    when 'f' is a pixel image.

    o slrm
    In the default case (where dataAtPoints is not given)
    all spatial covariates, including the spatial coordinates x and y,
    are now evaluated at the centre of each pixel. This improves
    consistency with other implementations of spatial logistic regression.

    o slrm
    Silently ignores any arguments '...' that are not recognised by 'as.mask'

    o summary.mppm
    Improved summary of the dependence of the
    interpoint interaction on the covariates.

    o densityEqualSplit
    New arguments 'at' and 'leaveoneout' for consistency with other functions.

    o pairs.im
    New argument 'drop'.

    o distmap.psp
    New arguments 'extras' and 'clip'

    o discretise
    New argument 'move.points' determines whether the point coordinates
    are also discretised.

    o summary.im
    Output improved when the image is empty (i.e. when all pixel values
    are undefined).

    o rhohat
    New option (smoother='piecewise') computes a piecewise-constant
    estimate of rho(z).

    o rhohat
    The result now includes the 'average' intensity rho.

    o distcdf
    Arguments which are NULL will be treated as missing.

    o distcdf
    New argument 'savedenom'.

    o densityHeat
    The function formerly known as 'densityHeat' or 'densityHeatlpp'
    is now renamed 'densityHeat.lpp' and is a method for the generic
    'densityHeat'.

BUG FIXES

    o nncross.ppp
    If the argument 'by' was given, some of the results were incorrect.
    [Spotted by Hank Stevens.]
    Fixed.

    o nncross.ppp, nncross.pp3
    If 'iX' and 'iY' were given, some of the results were incorrect.
    Fixed.

    o density.lpp
    The result had the wrong length if 'x' contained duplicated points
    when 'weights' were given and 'at="points"'.
    [Spotted by Andrea Gilardi]
    Fixed.

    o simulate.kppm
    Conditional simulation crashed on rare occasions,
    with an error about negative probabilities.
    Fixed.

    o model.matrix.mppm
    If the model was fitted using 'gam', the resulting matrix
    did not have an 'assign' attribute.
    Fixed.

    o model.depends
    Crashed for models fitted using 'gam'.
    Fixed.

    o predict.slrm, fitted.slrm
    Crashed if the model was fitted using split pixels (argument 'splitby').
    Fixed.

    o predict.slrm, fitted.slrm
    Crashed in some cases when 'window' was given.
    Fixed.

    o update.slrm
    Failed to find covariates that were provided in 'env'.
    Fixed.

    o cdf.test
    Crashed if the covariate was constant.
    Fixed.

        CHANGES IN spatstat VERSION 2.1-0

OVERVIEW

    o We thank Tilman Davies, Peter Diggle, Greg McSwiggan and Suman Rakshit
    for contributions.

    o diffusion kernel estimate of intensity

    o New dataset 'btb'

    o More support for spatial logistic regression models.

NEW FUNCTIONS

    o densityHeat
    New generic function for diffusion kernel estimation of intensity

    o densityHeat.ppp
    Diffusion kernel estimation of intensity in 2 dimensions

    o densityHeat.lpp
    Diffusion kernel estimation of intensity on a linear network

    o slrm
    'step' can now be applied to models fitted using 'slrm'.

NEW DATASETS

    o btb
    Bovine tuberculosis data, from Prof Peter Diggle.

        CHANGES IN spatstat VERSION 2.0-1

OVERVIEW

    o Minor changes to satisfy CRAN checks.

        CHANGES IN spatstat VERSION 2.0-0

OVERVIEW

    o We thank Corey Anderson, Michael Chirico, Andy Craig,
    Marcelino de la Cruz, Tilman Davies, Pavel Fibich,
    Kurt Hornik, Gopalan Nair, Yonatan Rosen and Rasmus Waagepetersen
    for contributions.

    o spatstat has been divided into 7 sub-packages
    (spatstat.utils, spatstat.data, spatstat.sparse,
    spatstat.geom, spatstat.core, spatstat.linnet and spatstat).

    o Important bug fix in simulation of log-Gaussian Cox processes.

    o Increased speed for large datasets.

    o variance calculations handle larger datasets.

    o predict.mppm now works for multitype point process models.

    o Improved handling of 'newdata' in predict.mppm.

    o More support for multi-dimensional patterns.

    o Changed default value of 'stringsAsFactors'.

    o spatstat now depends on R version 3.5.0 or later.

    o spatstat now requires spatstat.utils version >= 1.18-0

    o spatstat now requires spatstat.data version >= 1.7-0

    o Bug fixes and minor improvements.

    o Version nickname: "Caution: contains small parts"

NEW FUNCTIONS

    o intersect.boxx
    Compute intersection of boxes in multi-dimensional space

    o scale.boxx, scale.ppx
    Methods for 'scale' for boxes and patterns in multi-dimensional space

    o shift.boxx, shift.ppx
    Methods for 'shift' for boxes and patterns in multi-dimensional space

    o is.boxx
    Determine whether an object is a multidimensional box

SIGNIFICANT USER-VISIBLE CHANGES

    o package structure
    The original 'spatstat' package has been divided into 7 sub-packages
    (spatstat.utils, spatstat.data, spatstat.sparse,
    spatstat.geom, spatstat.core, spatstat.linnet and spatstat).
    The remaining 'spatstat' package requires all the other sub-packages.
    Your existing code scripts should still work with minimal changes.

    o overall speed
    Changes have been made to the internal code of spatstat
    which should accelerate computations involving large datasets.

    o vcov.ppm, summary.ppm
    Variance calculations now handle larger datasets
    because they use sparse arrays, by default.

    o dirichletEdges
    New argument 'clip'.

    o rSSI
    Accelerated.

    o localpcf, localpcfinhom
    New argument 'rvalue'.

    o harmonise.im
    The result belongs to class 'solist' and 'imlist'
    so that it can be plotted.

    o hyperframe, as.im.function
    The formal default value of 'stringsAsFactors' has been changed
    to 'NULL' to conform to changes in R. (The actual default value
    is TRUE for R < 4.1.0 and FALSE for R >= 4.1.0)

    o predict.mppm
    Now supports multitype point process models.

    o predict.mppm
    Improved handling of argument 'newdata'

    o densityHeat
    Default behaviour has changed slightly.
    New argument 'finespacing'.

    o density.lpp
    Accelerated when the pattern contains duplicated points.

    o rotmean
    The result now has the same 'unitname' as the input object X.
    New argument 'adjust' controls the smoothing bandwidth.

    o sessionInfo
    Output now lists packages that are imported but not loaded.

    o rlabel
    New argument 'group' specifies that the points are divided into
    several groups, and that relabelling is applied within each group.

    o plot.psp
    The code for 'style="width"' has been completely rewritten,
    so that it no longer depends on plot.linim, and is more efficient.
    The formal argument list has been extended.

    o mincontrast
    New argument 'action.bad.values' specifies what action is taken
    when the summary function produces NA or NaN or infinite values.

    o sessionLibs
    Package names are now sorted alphabetically.

    o [.linim
    Accelerated.

    o integral.im
    Accelerated in the case where 'domain' is a tessellation.

    o cbind.hyperframe
    Row names are not altered (previously they were altered
    using 'make.names')

    o simulate.ppm
    Now recognises the argument 'window' as an alternative to 'w'.

    o kppm
    Improved numerical robustness.

    o Kcross, Gcross, Jcross
    Function labels (shown on the plot legend) have been
    improved when i = j.

    o anova.mppm
    Issues a warning when applied to random-effects models
    (models fitted using the argument 'random').

    o [.ppx
    New argument 'clip'

BUG FIXES

    o rLGCP, simulate.kppm
    Simulation results for log-Gaussian Cox processes were incorrect
    unless the pixel dimensions and pixel spacings were identical
    on the horizontal and vertical axes. (If pixel dimensions were not
    specified, then the results were incorrect whenever the Frame of the
    simulation window was not a square.)
    [Spotted by Tilman Davies.]
    Fixed.

    o crossdist.pp3
    Results with periodic=TRUE were partially incorrect.
    Fixed.

    o deviance.lppm, pseudoR2.lppm
    Results were completely incorrect, due to a coding error.
    Fixed.

    o colourmap
    If a colour map was applied to numbers lying outside the range of the
    colour map, the wrong number of NA's was sometimes produced.
    Fixed.

    o Gest
    If correction="rs" or correction="km", then both the reduced-sample
    (border correction) and Kaplan-Meier corrected estimates were calculated.
    [Spotted by Gopalan Nair.]
    Fixed.

    o Lcross.inhom, Kcross.inhom, Kmulti.inhom
    The option 'correction="none"' was accepted but ignored.
    [Spotted by Corey Anderson.]
    Fixed.

    o rMatClust, rThomas, rCauchy, rVarGamma
    If the fitted model was effectively a Poisson process,
    the result did not have attributes 'Lambda' and 'parents'
    even when the user requested them.
    Fixed.

    o affine.owin
    For mask windows, the pixel resolution of the result
    was too fine, leading to very large datasets.
    Fixed.

    o affine.im
    If the transformation matrix was not diagonal, the pixel resolution
    of the result was too fine, leading to very large datasets.
    Fixed.

    o plot.ppp
    For a point pattern in a binary mask window,
    if both arguments 'col' and 'cols' were given,
    the points were coloured according to 'col', which was incorrect.
    Fixed.

    o dirichletEdges
    Crashed if any edges crossed the boundary of the window.
    Fixed.

    o Vmark
    Crashed if normalise=TRUE when there was only one column of marks.
    (Spotted by Pavel Fibich.)
    Fixed.

    o unitname
    Spatial datasets with incorrect internal format
    (or using an out-of-date version of the spatstat format)
    caused an error if the 'units' package was loaded.
    Fixed.

    o nnclean
    Crashed if k >= npoints(X).
    Fixed.

    o print.ppm
    Crashed sometimes when applied to the result of subfits().
    Fixed.

    o model.matrix.mppm
    Crashed with random-effects models.
    Fixed.

    o anova.mppm
    Crashed with random-effects models.
    Fixed.

    o objsurf.kppm
    Crashed if the model was fitted by Palm likelihood (method="palm")
    or second order composite likelihood (method="clik2").
    Fixed.

    o MinkowskiSum
    Crashed sometimes with an error message about 'sumconnected'.
    Fixed.

    o simulate.rhohat
    Crashed when applied to rhohat objects computed from data
    on a linear network.
    Fixed.

    o hyperframe
    Crashed if the argument 'row.names' was given
    and the hyperframe had exactly one row.
    Fixed.

CHANGES IN spatstat VERSION 1.64-1

OVERVIEW

    o Important bug fix in vcov.ppm

    o Relative risk estimation may include case weights.

    o We thank Ian Buller, Brian Ripley, Maximilian Vogtland
    and Maximilian Hesselbarth for contributions.

    o Nickname: 'Help you I can, yes!'

SIGNIFICANT USER-VISIBLE CHANGES

    o rshift.ppp, rshift.splitppp
    New argument 'nsim'.

    o relrisk.ppp
    New argument 'weights'.

    o density.splitppp
    New argument 'weights'.

BUG FIXES

    o vcov.ppm
    Variances were sometimes overestimated for Gibbs models.
    That is, entries of the Fisher information matrix were underestimated,
    because some contributions due to interaction were omitted
    (due to a coding error).
    Fixed.

    o density.ppp
    Crashed when se=TRUE if there were multiple columns of 'weights'.
    Fixed.

    o rbind.hyperframe
    Crashed unless all arguments had the same number of rows.
    (Spotted by Maximilian Vogtland).
    Fixed.

        CHANGES IN spatstat VERSION 1.64-0

OVERVIEW

    o We thank Robert Aue, Tilman Davies, Greg McSwiggan, Tyler Rudolph
    and Rasmus Plenge Waagepetersen for contributions.

    o Interactive graphics functions have been removed to a separate package.

    o spatstat no longer needs the packages 'tcltk' and 'rpanel'.

    o The suggested package 'maptools' should be version 0.9-9 or later.

    o Important bug fix in density.ppp.

    o Add new vertices to a linear network.

    o Relative risk estimation on a network.

    o Leave-one-out density estimation on a network.

    o Improvements and extensions to linear networks code.

    o Improvements to 'nndist' methods.

    o Function lengths.psp has been renamed lengths_psp.

    o Bug fixes related to mppm.

    o Stability improvements.

    o Version nickname: 'Susana Distancia'

NEW FUNCTIONS

    o relrisk.lpp
    Method for 'relrisk' for point patterns on a linear network.

    o bw.relrisklpp
    Bandwidth selection for relative risk on a network.

    o densityfun.lpp
    Method for 'densityfun' for point patterns on a linear network.

    o addVertices
    Add new vertices to a network, at locations outside the existing network.

    o lengths_psp
    This is the new name of the function 'lengths.psp',
    which had to be changed because of a conflict with the generic 'lengths'.

    o densityEqualSplit
    The equal-split algorithm for kernel density estimation on a network
    is now visible as a separate function.

    o densityHeat
    The heat-equation algorithm for kernel density estimation on a network
    is now visible as a separate function. It has also been extended
    to computing leave-one-out density estimates at the data points.

    o hotrod
    Compute the heat kernel kappa(u,v) on a one-dimensional line segment.

    o heatkernelapprox
    Calculate an approximation to the value of the heat kernel
    on a network evaluated at the source point, kappa(u,u).

SIGNIFICANT USER-VISIBLE CHANGES

    o nndist.pp3, nndist.ppx, nndist.lpp
    These functions now recognise the argument 'by'
    allowing computation of the nearest distance to each group of points.

    o pairdist.lpp, crossdist.lpp
    These functions can now handle large networks,
    using the sparse representation.

    o density.lpp, densityQuick.lpp
    Infinite bandwidth (sigma=Inf) is now permitted,
    and results in a density estimate that is constant over all locations.

    o as.linnet.psp
    The resulting network now has an attribute 'camefrom'
    indicating the provenance of each line segment in the network.

    o as.linnet.linnet
    New argument 'maxsize'.

    o repairNetwork
    Increased capability of detecting and repairing inconsistencies.

    o joinVertices
    New argument 'marks'.

    o insertVertices
    Marks attached to the lines of the network are now retained.

    o as.lpp
    Accepts more data formats.

    o iplot, iplot.ppp, iplot.layered, iplot.linnet, iplot.default
    These interactive plotting functions have been removed from spatstat
    into a new package 'spatstat.gui'

    o istat
    This interactive analysis function has been removed from spatstat
    into a new package 'spatstat.gui'

    o crossdist.lpp
    New argument 'check'.

    o lengths.psp
    This function will soon be Deprecated,
    in favour of the new name 'lengths_psp'

    o density.lpp
    Formal arguments changed. No effect on usage.

    o integral.linim
    Now handles complex-valued functions.

    o transect.im
    New argument 'nsample'.

    o bw.lppl
    Accelerated when distance="path".

    o collapse.fv
    Recognises the abbreviations used by fvnames()

BUG FIXES

    o density.ppp
    Edge correction factors were calculated incorrectly when the
    window was not a rectangle, causing a negative bias in the
    estimated intensity. [Spotted by Tilman Davies.]
    Bug introduced in spatstat 1.57-0, october 2018.
    Fixed.

    o mppm
    Internal data were malformed if the interaction was Hardcore()
    or MultiHard() or a hybrid involving these interactions.
    This caused various errors when the fitted model was used.
    Fixed.

    o mppm
    Ignored the arguments 'nd' and 'eps' controlling the quadrature scheme.
    Fixed.

    o "[.linnet", "[.lpp"
    In X[W] where W is a window, if a vertex of the network
    lay exactly on the boundary of W, an edge of length zero was created.
    Fixed.

    o valid.ppm
    Crashed sometimes when applied to the result of subfits().
    Fixed.

    o as.im.densityfun
    Crashed if argument W was missing.
    Fixed.

    o as.linnet.linnet
    This code could crash the R session, when sparse=FALSE, if there was
    insufficient memory available to create the matrix of distances
    between all pairs of network vertices.
    Fixed.

    o Summary.linim
    A spurious warning was generated when the operation any() or all()
    was applied to a logical-valued image on a network.
    Fixed.

    o "[<-.linim"
    Crashed if the assignment would have replaced some existing NA values.
    Fixed.

        CHANGES IN spatstat VERSION 1.63-3

OVERVIEW

    o Minor changes for compatibility with future versions of R

    o Minor improvements

    o Version nickname: "Wet paint"

SIGNIFICANT USER-VISIBLE CHANGES

    o plot.ppp
    The coordinate axes will be plotted if axes=TRUE.
    Axis labels xlab, ylab will be plotted if ann=TRUE.

(mef)

(geography/R-spatstat) Add missing DEPENDS

(mef)

doc: Updated geography/R-ggspatial to 1.1.5

(mef)

(geography/R-ggspatial) Updated 1.0.3 to 1.1.5

# ggspatial 1.1.5

* Added a `NEWS.md` file to track changes to the package.
* Suppressed discarded datum warnings that resulted from loading
  of test data.
* Suppressed discarded datum warnings that resulted from
  'rosm' package operations.
* Fixed an error that caused RStudio to crash from excessive
  memory allocation resulting when trying to plot a single point
  with `annotation_map_tile()` (#74).
* Ensured that packages in 'Suggests' are used conditionally in
  tests and examples.

(mef)

(geography/R-rgdal) Updated comment for TEST_DEPENDS.

(mef)