Drop gpsbabel as a dependency

Based on discussions with upstream, it is recommended but not
required.  gpsbabel requires qt4 now and is about to require qt5,
which makes it very large.

(gdt)

Updated net/corebird to 1.4.1nb1

(maya)

add dependency on adwaita icons. they're needed to display lots of icons
in corebird.

bump PKGREVISION.

(maya)

mention you can prefer pkgsrc at bootstrap, too.

pointed out by jperkin, thanks.

(maya)

Add a note about the
  "Symbol's function definition is void: make-annotation"
error to the xemacs-packages comment

(abs)

#5184

(spz)

Pullup ticket #5184 - requested by bsiegert
sysutils/py-borgbackup: security update

Revisions pulled up:
- sysutils/py-borgbackup/Makefile                              1.11
- sysutils/py-borgbackup/distinfo                              1.6

-------------------------------------------------------------------
  Module Name:    pkgsrc
  Committed By:  wiz
  Date:          Thu Jan  5 16:33:16 UTC 2017

  Modified Files:
          pkgsrc/sysutils/py-borgbackup: Makefile distinfo

  Log Message:
  Updated py-borgbackup to 1.0.9.

  Version 1.0.9 (2016-12-20)

  Security fixes:

      A flaw in the cryptographic authentication scheme in Borg
      allowed an attacker to spoof the manifest. See Pre-1.0.9 manifest
      spoofing vulnerability above for the steps you should take.
      borg check: When rebuilding the manifest (which should only be
      needed very rarely) duplicate archive names would be handled
      on a �ｿｽfirst come first serve�ｿｽ basis, allowing an attacker to
      apparently replace archives.

  Bug fixes:

      borg check:
          rebuild manifest if it窶冱 corrupted
          skip corrupted chunks during manifest rebuild
      fix TypeError in integrity error handler, #1903, #1894
      fix location parser for archives with @ char (regression
  introduced in 1.0.8), #1930
      fix wrong duration/timestamps if system clock jumped during a create
      fix progress display not updating if system clock jumps backwards
      fix checkpoint interval being incorrect if system clock jumps

  Other changes:

      docs:
          add python3-devel as a dependency for cygwin-based installation
          clarify extract is relative to current directory
          FAQ: fix link to changelog
          markup fixes
      tests:
          test_get_(cache|keys)_dir: clean env state, #1897
          get back pytest窶冱 pretty assertion failures, #1938
      setup.py build_usage:
          fixed build_usage not processing all commands
          fixed build_usage not generating includes for debug commands

  Version 1.0.9rc1 (2016-11-27)

  Bug fixes:

      files cache: fix determination of newest mtime in backup set
      (which is used in cache cleanup and led to wrong �ｿｽA�ｿｽ [added]
      status for unchanged files in next backup), #1860.
      borg check:
          fix incorrectly reporting attic 0.13 and earlier archives as corrupt
          handle repo w/o objects gracefully and also bail out early if
  repo is completely empty, #1815.
      fix tox/pybuild in 1.0-maint
      at xattr module import time, loggers are not initialized yet

  New features:

      borg umount <mountpoint> exposed already existing umount code
      via the CLI api, so users can use it, which is more consistent
      than using borg to mount and fusermount -u (or umount) to
      un-mount, #1855.
      implement borg create 窶渡oatime 窶渡octime, fixes #1853

  Other changes:

      docs:
          display README correctly on PyPI
          improve cache / index docs, esp. files cache docs, fixes #1825
          different pattern matching for 窶兎xclude, #1779
          datetime formatting examples for {now} placeholder, #1822
          clarify passphrase mode attic repo upgrade, #1854
          clarify 窶砥mask usage, #1859
          clarify how to choose PR target branch
          clarify prune behavior for different archive contents, #1824
          fix PDF issues, add logo, fix authors, headings, TOC
          move security verification to support section
          fix links in standalone README (:ref: tags)
          add link to security contact in README
          add FAQ about security
          move fork differences to FAQ
          add more details about resource usage
      tests: skip remote tests on cygwin, #1268
      travis:
          allow OS X failures until the brew cask osxfuse issue is fixed
          caskroom osxfuse-beta gone, it窶冱 osxfuse now (3.5.3)
      vagrant:
          upgrade OSXfuse / FUSE for macOS to 3.5.3
          remove llfuse from tox.ini at a central place
          do not try to install llfuse on centos6
          fix fuse test for darwin, #1546
          add windows virtual machine with cygwin
          Vagrantfile cleanup / code deduplication

  To generate a diff of this commit:
  cvs rdiff -u -r1.10 -r1.11 pkgsrc/sysutils/py-borgbackup/Makefile
  cvs rdiff -u -r1.5 -r1.6 pkgsrc/sysutils/py-borgbackup/distinfo

(spz)

Mention in openbsd readme that it is possible to use OpenSSL from pkgsrc,
as an alternative to the somewhat controversial patch suggested in
PR pkg/51486.

(maya)

Update HOMEPAGE

(gdt)

Darwin needs -lresolv.

(jperkin)

Updated graphics/py-pygal to 2.3.1

(kamil)

Upgrade py-pygal from 1.7.0 to 2.3.1

This upgrade fixes compatibility with new lxml.

Upstream changelog
==================
2.3.1

_This is a micro release and I have very little time on my hands right now sorry_

    Fix crash with no values when the print_values_position param is set (thanks @cristen)

2.3.0

    New call API: chart = Line(fill=True); chart.add('title', [1, 3, 12]); chart.render() can now be replaced with Line(fill=True)(1, 3, 12, title='title').render()
    Drop python 2.6 support

2.2.3

    Fix bar static value positioning (#315)
    Add stroke_opacity style (#321)
    Remove useless js in sparklines. (#312)

2.2.2

    Add classes option.
    Handle ellipsis in list type configs to auto-extend parent. (Viva python3)

2.2.0

    Support interruptions in line charts (thanks @piotrmaslanka #300)
    Fix confidence interval reactiveness (thanks @chartique #296)
    Add horizontal line charts (thanks @chartique #301)
    There is now a formatter config option to format values as specified. The formatter callable may or may not take chart, serie and index as argument. The default value formatting is now chart dependent and is value_formatter for most graph but could be a combination of value_formatter and x_value_formatter for dual charts.
    The human_readable option has been removed. Now you have to use the pygal.formatters.human_readable formatter (value_formatter=human_readable instead of human_readable=True)
    New chart type: SolidGauge (thanks @chartique #295)
    Fix range option for some Charts (#297 #298)
    Fix timezones for DateTimeLine for python 2 (#306, #302)
    Set default uri protocol to https (should fix a lot of "no tooltips" bugs).

2.1.1

    Import scipy as a last resort in stats.py (should workaround bugs like #294 if scipy is installed but not used)

2.1.0

    Bar print value positioning with print_values_position. Can be top, center or bottom (thanks @chartique #291) ci doc
    Confidence intervals (thanks @chartique #292) data doc

2.0.12

    Use custom xml_declaration avoiding conflict with processing instructions

2.0.11

    lxml 3.5 compatibility (#282)

2.0.10

    Fix transposable_node in case all attributes are not there. (thanks @yobuntu).

2.0.9

    Add dynamic_print_values to show print_values on legend hover. (#279)
    Fix unparse_color for python 3.5+ compatibility (thanks @felixonmars, @sjourdois)
    Process major labels as labels. (#263)
    Fix labels rotation > 180 (#257)
    Fix secondary axis
    Don't forget secondary series in table rendering (#260)
    Add defs config option to allow adding gradients and patterns.

2.0.8

    Fix value overwrite in map. (#275)

2.0.7

    Fixing to checks breaking rendering of DateTimeLine and TimeDeltaLine (#264) (thanks @mmrose)
    Fix render_in_browser. (#266) (#268) (thanks @waixwong)

2.0.6

    Avoid x label formatting when label is a string

2.0.5

    Fix x label formatting

2.0.4

    Fix map coloration

2.0.3

    Fix label adaptation. (#256)
    Fix wrong radar truncation. (#255)

2.0.2

    Fix view box differently to avoid getting a null height on huge numbers. (#254)
    Fix broken font_family default
    Fix non namespaced svg (without embed) javascript by adding uuid in config object. (config is in window.pygal now).

2.0.1

    Fix the missing title on x_labels with labels.
    Auto cast to str x labels in non dual charts (#178)
    Add print_labels option to print label too. (#197)
    Add value_label_font_family and value_label_font_size style options for print_labels.
    Default print_zeroes to True
    (Re)Add xlink in desc to show on tooltip
    Activate element on tooltip hovering. (#106)
    Fix radar axis behaviour (#247)
    Add tooltip support in metadata to add a title (#249).
    Take config class options in account too.

2.0.0

    Rework the ghost mechanism to come back to a more object oriented behavior, storing all state in a state object which is created on every render. (#161)
    Refactor maps
    Add world continents
    Add swiss cantons map (thanks @sergedroz)
    Add inverse_y_axis options to reverse graph (#24)
    Fix DateTimeLine time data loss (#193)
    Fix no data for graphs with only zeroes (#148)
    Support value formatter for pie graphs (#218) (thanks @never-eat-yellow-snow)
    Add new Box plot modes and outliers and set extremes as default (#226 #121 #149) (thanks @djezar)
    Add secondary_range option to set range for secondary values. (#203)
    Maps are now plugins, they are removed from pygal core and moved to packages (pygal_maps_world, pygal_maps_fr, pygal_maps_ch, ...) (#225)
    Dot now supports negative values
    Fix dot with log scale (#201)
    Fix y_labels behaviour for lines
    Fix x_labels and y_labels behaviour for xy like
    Improve gauge a bit
    Finally allow call chains on add
    Transform min_scale and max_scale as options
    mode option has been renamed to a less generic name: box_mode
    fix stack_from_top for stacked lines
    Add flake8 test to py.test in tox
    Remove stroke style in style and set it as a global / serie configuration.
    Fix None values in tables
    Fix timezones in DateTimeLine
    Rename in Style foreground_light as foreground_strong
    Rename in Style foreground_dark as foreground_subtle
    Add a render_data_uri method (#237)
    Move font_size config to style
    Add font_family for various elements in style
    Add googlefont:font support for style fonts
    Add tooltip_fancy_mode to revert to old tooltips
    Add auto print_value color + a configurable value_colors list in style
    Add guide_stroke_dasharray and guide_stroke_dasharray in style to customize guides (#242) (thanks @cbergmiller)
    Refactor label processing in a _compute_x_labels and _compute_y_labels method. Handle both string and numbers for all charts. Create a Dual base chart for dual axis charts. (#236)
    Better js integration in maps. Use the normal tooltip.

(kamil)

Updated misc/calibre to 2.77.0

(wiz)

Updated calibre to 2.77.0.

- version: 2.77.0
  date: 2017-01-13

  bug fixes:
    - title: "Conversion: Fix changing the cover image not updating references to the old cover image inside SVG wrappers."
      tickets: [1655309]

    - title: "E-book viewer: Fix a regression that caused clicking links in the footnote popup window to stop working"

    - title: "Edit Book: Fix importing DOCX file as new book not setting the version attribute in the OPF"

    - title: "Kindle driver: Fix some newer KFX books not being recognized on e-ink kindles, because of a change in how metadata is stored in the KFX format"

    - title: "DOCX Output: Fix missing <td> tag causing conversion to fail."
      tickets: [1654463]

    - title: "Edit Book: Fix group references causing errors when used in replace string in the normal mode search and replace"

    - title: "Edit Book: Fix Check Book reporting a spurious mime/type mismatch error after replacing a file with a file having a different mime type."
      tickets: [1653977]

    - title: "Amazon metadata download: Fix detection of series not working for some books due to changes in the amazon website"

    - title: "Fix Nook HD+ not being detected on windows"

    - title: "Edit Book: Ensure keyboard focus stays with Files Browser when renaming files."
      tickets: [1653311]

  improved recipes:
    - kath.net
    - publico.pt
    - Telepolis
    - The Times
    - Helsingin Sanomat

(wiz)

Updated textproc/iso-codes to 3.74

(wiz)

Updated iso-codes to 3.74.

iso-codes 3.74
--------------
Dr. Tobias Quathamer <toddy@debian.org>
Mon, 16 Jan 2017

  [ ISO 3166-2 ]
  * Remove GB- prefix from parent code for Great Britain.
    Closes: alioth#315604

(wiz)

Match upstream version more closely.

(wiz)

Updated math/fftwf to 3.3.6pl1

(wiz)

Updated fftwf to 3.3.6pl1.

FFTW 3.3.6-pl1:

* Bugfix: FFTW 3.3.6 had the wrong libtool version number, and generated
  shared libraries of the form libfftw3.so.2.6.6 instead of
  libfftw3.so.3.*.

FFTW 3.3.6:

* The fftw_make_planner_thread_safe() API introduced in 3.3.5 didn't
  work, and this 3.3.6 fixes it.  Sorry about that.
* compilation fixes for IBM XLC
* compilation fixes for threads on Windows
* fix SIMD autodetection on amd64 when (_MSC_VER > 1500)

(wiz)

Updated devel/meld to 3.16.4nb1

(leot)

Add a dependency to graphics/adwaita-icon-theme
Bump PKGREVISION

Pointed out via pkg/51835 by Joern Clausen.

Approved by <wiz>

(leot)

Updated math/py-numpy to 1.12.0

(wiz)

Updated py-numpy to 1.12.0.

FAILED (KNOWNFAIL=8, SKIP=9, errors=1, failures=1)

==========================
NumPy 1.12.0 Release Notes
==========================

This release supports Python 2.7 and 3.4 - 3.6.

Highlights
==========
The NumPy 1.12.0 release contains a large number of fixes and improvements, but
few that stand out above all others. That makes picking out the highlights
somewhat arbitrary but the following may be of particular interest or indicate
areas likely to have future consequences.

* Order of operations in ``np.einsum`` can now be optimized for large speed improvements.
* New ``signature`` argument to ``np.vectorize`` for vectorizing with core dimensions.
* The ``keepdims`` argument was added to many functions.
* New context manager for testing warnings
* Support for BLIS in numpy.distutils
* Much improved support for PyPy (not yet finished)

Dropped Support
===============

* Support for Python 2.6, 3.2, and 3.3 has been dropped.

Added Support
=============

* Support for PyPy 2.7 v5.6.0 has been added. While not complete (nditer
  ``updateifcopy`` is not supported yet), this is a milestone for PyPy's
  C-API compatibility layer.

Build System Changes
====================

* Library order is preserved, instead of being reordered to match that of
  the directories.

Deprecations
============

Assignment of ndarray object's ``data`` attribute
-------------------------------------------------
Assigning the 'data' attribute is an inherently unsafe operation as pointed
out in gh-7083. Such a capability will be removed in the future.

Unsafe int casting of the num attribute in ``linspace``
-------------------------------------------------------
``np.linspace`` now raises DeprecationWarning when num cannot be safely
interpreted as an integer.

Insufficient bit width parameter to ``binary_repr``
---------------------------------------------------
If a 'width' parameter is passed into ``binary_repr`` that is insufficient to
represent the number in base 2 (positive) or 2's complement (negative) form,
the function used to silently ignore the parameter and return a representation
using the minimal number of bits needed for the form in question. Such behavior
is now considered unsafe from a user perspective and will raise an error in the
future.

Future Changes
==============

* In 1.13 NAT will always compare False except for ``NAT != NAT``,
  which will be True.  In short, NAT will behave like NaN
* In 1.13 np.average will preserve subclasses, to match the behavior of most
  other numpy functions such as np.mean. In particular, this means calls which
  returned a scalar may return a 0-d subclass object instead.

Multiple-field manipulation of structured arrays
------------------------------------------------
In 1.13 the behavior of structured arrays involving multiple fields will change
in two ways:

First, indexing a structured array with multiple fields (eg,
``arr[['f1', 'f3']]``) will return a view into the original array in 1.13,
instead of a copy. Note the returned view will have extra padding bytes
corresponding to intervening fields in the original array, unlike the copy in
1.12, which will affect code such as ``arr[['f1', 'f3']].view(newdtype)``.

Second, for numpy versions 1.6 to 1.12 assignment between structured arrays
occurs "by field name": Fields in the destination array are set to the
identically-named field in the source array or to 0 if the source does not have
a field::

    >>> a = np.array([(1,2),(3,4)], dtype=[('x', 'i4'), ('y', 'i4')])
    >>> b = np.ones(2, dtype=[('z', 'i4'), ('y', 'i4'), ('x', 'i4')])
    >>> b[:] = a
    >>> b
    array([(0, 2, 1), (0, 4, 3)],
          dtype=[('z', '<i4'), ('y', '<i4'), ('x', '<i4')])

In 1.13 assignment will instead occur "by position": The Nth field of the
destination will be set to the Nth field of the source regardless of field
name. The old behavior can be obtained by using indexing to reorder the fields
before
assignment, e.g., ``b[['x', 'y']] = a[['y', 'x']]``.

Compatibility notes
===================

DeprecationWarning to error
---------------------------

* Indexing with floats raises ``IndexError``,
  e.g., a[0, 0.0].
* Indexing with non-integer array_like raises ``IndexError``,
  e.g., ``a['1', '2']``
* Indexing with multiple ellipsis raises ``IndexError``,
  e.g., ``a[..., ...]``.
* Non-integers used as index values raise ``TypeError``,
  e.g., in ``reshape``, ``take``, and specifying reduce axis.

FutureWarning to changed behavior
---------------------------------

* ``np.full`` now returns an array of the fill-value's dtype if no dtype is
  given, instead of defaulting to float.
* np.average will emit a warning if the argument is a subclass of ndarray,
  as the subclass will be preserved starting in 1.13. (see Future Changes)

``power`` and ``**`` raise errors for integer to negative integer powers
------------------------------------------------------------------------
The previous behavior depended on whether numpy scalar integers or numpy
integer arrays were involved.

For arrays

* Zero to negative integer powers returned least integral value.
* Both 1, -1 to negative integer powers returned correct values.
* The remaining integers returned zero when raised to negative integer powers.

For scalars

* Zero to negative integer powers returned least integral value.
* Both 1, -1 to negative integer powers returned correct values.
* The remaining integers sometimes returned zero, sometimes the
  correct float depending on the integer type combination.

All of these cases now raise a ``ValueError`` except for those integer
combinations whose common type is float, for instance uint64 and int8. It was
felt that a simple rule was the best way to go rather than have special
exceptions for the integer units. If you need negative powers, use an inexact
type.

Relaxed stride checking is the default
--------------------------------------
This will have some impact on code that assumed that ``F_CONTIGUOUS`` and
``C_CONTIGUOUS`` were mutually exclusive and could be set to determine the
default order for arrays that are now both.

The ``np.percentile`` 'midpoint' interpolation method fixed for exact indices
-----------------------------------------------------------------------------
The 'midpoint' interpolator now gives the same result as 'lower' and 'higher' when
the two coincide. Previous behavior of 'lower' + 0.5 is fixed.

``keepdims`` kwarg is passed through to user-class methods
----------------------------------------------------------
numpy functions that take a ``keepdims`` kwarg now pass the value
through to the corresponding methods on ndarray sub-classes.  Previously the
``keepdims`` keyword would be silently dropped.  These functions now have
the following behavior:

1. If user does not provide ``keepdims``, no keyword is passed to the underlying
  method.
2. Any user-provided value of ``keepdims`` is passed through as a keyword
  argument to the method.

This will raise in the case where the method does not support a
``keepdims`` kwarg and the user explicitly passes in ``keepdims``.

The following functions are changed: ``sum``, ``product``,
``sometrue``, ``alltrue``, ``any``, ``all``, ``amax``, ``amin``,
``prod``, ``mean``, ``std``, ``var``, ``nanmin``, ``nanmax``,
``nansum``, ``nanprod``, ``nanmean``, ``nanmedian``, ``nanvar``,
``nanstd``

``bitwise_and`` identity changed
--------------------------------
The previous identity was 1, it is now -1. See entry in `Improvements`_ for
more explanation.

ma.median warns and returns nan when unmasked invalid values are encountered
----------------------------------------------------------------------------
Similar to unmasked median the masked median `ma.median` now emits a Runtime
warning and returns `NaN` in slices where an unmasked `NaN` is present.

Greater consistancy in ``assert_almost_equal``
----------------------------------------------
The precision check for scalars has been changed to match that for arrays. It
is now::

    abs(actual - desired) < 1.5 * 10**(-decimal)

Note that this is looser than previously documented, but agrees with the
previous implementation used in ``assert_array_almost_equal``. Due to the
change in implementation some very delicate tests may fail that did not
fail before.

``NoseTester`` behaviour of warnings during testing
---------------------------------------------------
When ``raise_warnings="develop"`` is given, all uncaught warnings will now
be considered a test failure. Previously only selected ones were raised.
Warnings which are not caught or raised (mostly when in release mode)
will be shown once during the test cycle similar to the default python
settings.

``assert_warns`` and ``deprecated`` decorator more specific
-----------------------------------------------------------
The ``assert_warns`` function and context manager are now more specific
to the given warning category. This increased specificity leads to them
being handled according to the outer warning settings. This means that
no warning may be raised in cases where a wrong category warning is given
and ignored outside the context. Alternatively the increased specificity
may mean that warnings that were incorrectly ignored will now be shown
or raised. See also the new ``suppress_warnings`` context manager.
The same is true for the ``deprecated`` decorator.

C API
-----
No changes.

New Features
============

Writeable keyword argument for ``as_strided``
---------------------------------------------
``np.lib.stride_tricks.as_strided`` now has a ``writeable``
keyword argument. It can be set to False when no write operation
to the returned array is expected to avoid accidental
unpredictable writes.

``axes`` keyword argument for ``rot90``
---------------------------------------
The ``axes`` keyword argument in ``rot90`` determines the plane in which the
array is rotated. It defaults to ``axes=(0,1)`` as in the originial function.

Generalized ``flip``
--------------------
``flipud`` and ``fliplr`` reverse the elements of an array along axis=0 and
axis=1 respectively. The newly added ``flip`` function reverses the elements of
an array along any given axis.

* ``np.count_nonzero`` now has an ``axis`` parameter, allowing
  non-zero counts to be generated on more than just a flattened
  array object.

BLIS support in ``numpy.distutils``
-----------------------------------
Building against the BLAS implementation provided by the BLIS library is now
supported.  See the ``[blis]`` section in ``site.cfg.example`` (in the root of
the numpy repo or source distribution).

Hook in ``numpy/__init__.py`` to run distribution-specific checks
-----------------------------------------------------------------
Binary distributions of numpy may need to run specific hardware checks or load
specific libraries during numpy initialization.  For example, if we are
distributing numpy with a BLAS library that requires SSE2 instructions, we
would like to check the machine on which numpy is running does have SSE2 in
order to give an informative error.

Add a hook in ``numpy/__init__.py`` to import a ``numpy/_distributor_init.py``
file that will remain empty (bar a docstring) in the standard numpy source,
but that can be overwritten by people making binary distributions of numpy.

New nanfunctions ``nancumsum`` and ``nancumprod`` added
-------------------------------------------------------
Nan-functions ``nancumsum`` and ``nancumprod`` have been added to
compute ``cumsum`` and ``cumprod`` by ignoring nans.

``np.interp`` can now interpolate complex values
------------------------------------------------
``np.lib.interp(x, xp, fp)`` now allows the interpolated array ``fp``
to be complex and will interpolate at ``complex128`` precision.

New polynomial evaluation function ``polyvalfromroots`` added
-------------------------------------------------------------
The new function ``polyvalfromroots`` evaluates a polynomial at given points
from the roots of the polynomial. This is useful for higher order polynomials,
where expansion into polynomial coefficients is inaccurate at machine
precision.

New array creation function ``geomspace`` added
-----------------------------------------------
The new function ``geomspace`` generates a geometric sequence.  It is similar
to ``logspace``, but with start and stop specified directly:
``geomspace(start, stop)`` behaves the same as
``logspace(log10(start), log10(stop))``.

New context manager for testing warnings
----------------------------------------
A new context manager ``suppress_warnings`` has been added to the testing
utils. This context manager is designed to help reliably test warnings.
Specifically to reliably filter/ignore warnings. Ignoring warnings
by using an "ignore" filter in Python versions before 3.4.x can quickly
result in these (or similar) warnings not being tested reliably.

The context manager allows to filter (as well as record) warnings similar
to the ``catch_warnings`` context, but allows for easier specificity.
Also printing warnings that have not been filtered or nesting the
context manager will work as expected. Additionally, it is possible
to use the context manager as a decorator which can be useful when
multiple tests give need to hide the same warning.

New masked array functions ``ma.convolve`` and ``ma.correlate`` added
---------------------------------------------------------------------
These functions wrapped the non-masked versions, but propagate through masked
values. There are two different propagation modes. The default causes masked
values to contaminate the result with masks, but the other mode only outputs
masks if there is no alternative.

New ``float_power`` ufunc
-------------------------
The new ``float_power`` ufunc is like the ``power`` function except all
computation is done in a minimum precision of float64. There was a long
discussion on the numpy mailing list of how to treat integers to negative
integer powers and a popular proposal was that the ``__pow__`` operator should
always return results of at least float64 precision. The ``float_power``
function implements that option. Note that it does not support object arrays.

``np.loadtxt`` now supports a single integer as ``usecol`` argument
-------------------------------------------------------------------
Instead of using ``usecol=(n,)`` to read the nth column of a file
it is now allowed to use ``usecol=n``. Also the error message is
more user friendly when a non-integer is passed as a column index.

Improved automated bin estimators for ``histogram``
---------------------------------------------------
Added 'doane' and 'sqrt' estimators to ``histogram`` via the ``bins``
argument. Added support for range-restricted histograms with automated
bin estimation.

``np.roll`` can now roll multiple axes at the same time
-------------------------------------------------------
The ``shift`` and ``axis`` arguments to ``roll`` are now broadcast against each
other, and each specified axis is shifted accordingly.

The ``__complex__`` method has been implemented for the ndarrays
----------------------------------------------------------------
Calling ``complex()`` on a size 1 array will now cast to a python
complex.

``pathlib.Path`` objects now supported
--------------------------------------
The standard ``np.load``, ``np.save``, ``np.loadtxt``, ``np.savez``, and similar
functions can now take ``pathlib.Path`` objects as an argument instead of a
filename or open file object.

New ``bits`` attribute for ``np.finfo``
---------------------------------------
This makes ``np.finfo`` consistent with ``np.iinfo`` which already has that
attribute.

New ``signature`` argument to ``np.vectorize``
----------------------------------------------
This argument allows for vectorizing user defined functions with core
dimensions, in the style of NumPy's
:ref:`generalized universal functions<c-api.generalized-ufuncs>`. This allows
for vectorizing a much broader class of functions. For example, an arbitrary
distance metric that combines two vectors to produce a scalar could be
vectorized with ``signature='(n),(n)->()'``. See ``np.vectorize`` for full
details.

Emit py3kwarnings for division of integer arrays
------------------------------------------------
To help people migrate their code bases from Python 2 to Python 3, the
python interpreter has a handy option -3, which issues warnings at runtime.
One of its warnings is for integer division::

    $ python -3 -c "2/3"

    -c:1: DeprecationWarning: classic int division

In Python 3, the new integer division semantics also apply to numpy arrays.
With this version, numpy will emit a similar warning::

    $ python -3 -c "import numpy as np; np.array(2)/np.array(3)"

    -c:1: DeprecationWarning: numpy: classic int division

numpy.sctypes now includes bytes on Python3 too
-----------------------------------------------
Previously, it included str (bytes) and unicode on Python2, but only str
(unicode) on Python3.

Improvements
============

``bitwise_and`` identity changed
--------------------------------
The previous identity was 1 with the result that all bits except the LSB were
masked out when the reduce method was used.  The new identity is -1, which
should work properly on twos complement machines as all bits will be set to
one.

Generalized Ufuncs will now unlock the GIL
------------------------------------------
Generalized Ufuncs, including most of the linalg module, will now unlock
the Python global interpreter lock.

Caches in `np.fft` are now bounded in total size and item count
---------------------------------------------------------------
The caches in `np.fft` that speed up successive FFTs of the same length can no
longer grow without bounds. They have been replaced with LRU (least recently
used) caches that automatically evict no longer needed items if either the
memory size or item count limit has been reached.

Improved handling of zero-width string/unicode dtypes
-----------------------------------------------------
Fixed several interfaces that explicitly disallowed arrays with zero-width
string dtypes (i.e. ``dtype('S0')`` or ``dtype('U0')``, and fixed several
bugs where such dtypes were not handled properly.  In particular, changed
``ndarray.__new__`` to not implicitly convert ``dtype('S0')`` to
``dtype('S1')`` (and likewise for unicode) when creating new arrays.

Integer ufuncs vectorized with AVX2
-----------------------------------
If the cpu supports it at runtime the basic integer ufuncs now use AVX2
instructions. This feature is currently only available when compiled with GCC.

Order of operations optimization in ``np.einsum``
--------------------------------------------------
``np.einsum`` now supports the ``optimize`` argument which will optimize the
order of contraction. For example, ``np.einsum`` would complete the chain dot
example ``np.einsum(���ij,jk,kl->il���, a, b, c)`` in a single pass which would
scale like ``N^4``; however, when ``optimize=True`` ``np.einsum`` will create
an intermediate array to reduce this scaling to ``N^3`` or effectively
``np.dot(a, b).dot(c)``. Usage of intermediate tensors to reduce scaling has
been applied to the general einsum summation notation. See ``np.einsum_path``
for more details.

quicksort has been changed to an introsort
------------------------------------------
The quicksort kind of ``np.sort`` and ``np.argsort`` is now an introsort which
is regular quicksort but changing to a heapsort when not enough progress is
made. This retains the good quicksort performance while changing the worst case
runtime from ``O(N^2)`` to ``O(N*log(N))``.

``ediff1d`` improved performance and subclass handling
------------------------------------------------------
The ediff1d function uses an array instead on a flat iterator for the
subtraction.  When to_begin or to_end is not None, the subtraction is performed
in place to eliminate a copy operation.  A side effect is that certain
subclasses are handled better, namely astropy.Quantity, since the complete
array is created, wrapped, and then begin and end values are set, instead of
using concatenate.

Improved precision of ``ndarray.mean`` for float16 arrays
---------------------------------------------------------
The computation of the mean of float16 arrays is now carried out in float32 for
improved precision. This should be useful in packages such as Theano
where the precision of float16 is adequate and its smaller footprint is
desireable.

Changes
=======

All array-like methods are now called with keyword arguments in fromnumeric.py
------------------------------------------------------------------------------
Internally, many array-like methods in fromnumeric.py were being called with
positional arguments instead of keyword arguments as their external signatures
were doing. This caused a complication in the downstream 'pandas' library
that encountered an issue with 'numpy' compatibility. Now, all array-like
methods in this module are called with keyword arguments instead.

Operations on np.memmap objects return numpy arrays in most cases
-----------------------------------------------------------------
Previously operations on a memmap object would misleadingly return a memmap
instance even if the result was actually not memmapped.  For example,
``arr + 1`` or ``arr + arr`` would return memmap instances, although no memory
from the output array is memmaped. Version 1.12 returns ordinary numpy arrays
from these operations.

Also, reduction of a memmap (e.g.  ``.sum(axis=None``) now returns a numpy
scalar instead of a 0d memmap.

stacklevel of warnings increased
--------------------------------
The stacklevel for python based warnings was increased so that most warnings
will report the offending line of the user code instead of the line the
warning itself is given. Passing of stacklevel is now tested to ensure that
new warnings will receive the ``stacklevel`` argument.

This causes warnings with the "default" or "module" filter to be shown once
for every offending user code line or user module instead of only once. On
python versions before 3.4, this can cause warnings to appear that were falsely
ignored before, which may be surprising especially in test suits.

(wiz)

Fix build for non HPUX on HP PA platforms

Thanks to Riccardo Mottola for testing

No PKGREVISION bump as should not affect build on any previously working platform

(abs)

Updated x11/libxkbcommon to 0.7.1

(wiz)

Updated libxkbcommon to 0.7.1.

libxkbcommon 0.7.1 - 2017-01-18
==================

- Fixed various reported problems when the current locale is tr_TR.UTF-8.

  The function xkb_keysym_from_name() used to perform case-insensitive
  string comparisons in a locale-dependent way, but required it to to
  work as in the C/ASCII locale (the so called "Turkish i problem").

  The function is now no longer affected by the current locale.

- Fixed compilation in NetBSD.

(wiz)

Updated devel/py-test-runner to 2.10.1

(wiz)

Updated py-test-runner to 2.10.1.

2.10.1
~~~~~~

* #21: Avoid mutating dictionary keys during iteration.

2.10
~~~~

* #20: Leverage technique in `setuptools 794
  <https://github.com/pypa/setuptools/issues/794>`_
  to populate PYTHONPATH during test runs such that
  Python subprocesses will have a dependency context
  comparable to the test runner.

(wiz)

Updated net/p5-WebService-MusicBrainz to 0.94

(wiz)

Updated p5-WebService-MusicBrainz to 0.94.

0.94 Tuesday Auguest 2016
- Fixed tests

(wiz)

Updated devel/p5-Tie-Cycle to 1.222

(wiz)

Updated p5-Tie-Cycle to 1.222.

1.222 2017-01-20T11:30:37Z
* The module seems to have disappeared from CPAN, so I'm
re-uploading.

(wiz)

Updated www/p5-libwww to 6.16

(wiz)

Updated p5-libwww to 6.16.

6.16 2017-01-12
- Moved LWP::Protocol::GHTTP into its own dist and removed from here (PR#81)
- Updated test suite to use strict/warnings and Test::More (PR#88)
- Additional tests for UserAgent coverage (PR#79)
- Cleaned up documentation formatting and fixed several typos (PR#87, PR#93)
- Stop promoting use of HTTP::Cookies and instead use HTTP::CookieJar::LWP (PR#102)
- Added some new documentation to UserAgent and tutorial (PR#68)
- Allow default header to carry over when using ->post() in UA (PR#100)

(wiz)

Updated audio/libopus to 1.1.4

(wiz)

Updated libopus to 1.1.4.

This Opus 1.1.4 release fixes a single bug. A specially-crafted
Opus packet could cause an integer wrap-around in the SILK LSF
stabilization code. This would cause an out-of-bounds read 256
bytes before a constant table. In most circumstances, the consequences
are harmless and the result is simply noise in the audio.

This was reported as CVE-2017-0381. Contrary to that report, our
own analysis shows that no remote code execution is possible.
However, we are making this release as a precaution.

(wiz)

Updated security/libgcrypt to 1.7.6

(wiz)

Updated libgcrypt to 1.7.6.

All tests pass.

Noteworthy changes in version 1.7.6 (2017-01-18)  [C21/A1/R6]
------------------------------------------------

* Bug fixes:

  - Fix AES CTR self-check detected failure in the SSSE3 based
    implementation.

  - Remove gratuitous select before the getrandom syscall.

(wiz)

Updated graphics/p5-PerlMagick to 7.0.4.5 [wiz 2017-01-22]

(wiz)

Updated devel/libmtp to 1.1.12

(ryoon)

Updated ImageMagick to 7.0.4.5.

2017-01-21  7.0.4-5 Cristy  <quetzlzacatenango@image...>
  * Release ImageMagick version 7.0.4-5, GIT revision 19381:7ae396f:20170121.

2017-01-18  7.0.4-5 Cristy  <quetzlzacatenango@image...>
  * Don't set background for transparent tiled images (reference
    http://www.imagemagick.org/discourse-server/viewtopic.php?f=3&t=31210).

(wiz)

Update to 1.1.12

Changelog:
I have just released libmtp 1.1.12. This release is largely meant as
USB ID addition update.

There was also an addition of a function called LIBMTP_Handle_Event(),
to handle USB events asynchronously.

(ryoon)

Updated cross/arm-none-eabi-gcc to 6.3.0

(ryoon)

Update to 6.3.0

Changelog:
* The default mode for C++ is now -std=gnu++14 instead of -std=gnu++98.

# ARM

Support for revisions of the ARM architecture prior to ARMv4t has been
deprecated and will be removed in a future GCC release. The -mcpu and
-mtune values that are deprecated are: arm2, arm250, arm3, arm6,
arm60, arm600, arm610, arm620, arm7, arm7d, arm7di, arm70, arm700,
arm700i, arm710, arm720, arm710c, arm7100, arm7500, arm7500fe, arm7m,
arm7dm, arm7dmi, arm8, arm810, strongarm, strongarm110, strongarm1100,
strongarm1110, fa526, fa626. The value arm7tdmi is still
supported. The values of -march that are deprecated are:
armv2,armv2a,armv3,armv3m,armv4.

The ARM port now supports target attributes and pragmas. Please refer
to the documentation for details of available attributes and pragmas
as well as usage instructions.

Support has been added for the following processors (GCC identifiers
in parentheses): ARM Cortex-A32 (cortex-a32), ARM Cortex-A35
(cortex-a35) and ARM Cortex-R8 (cortex-r8). The GCC identifiers can be
used as arguments to the -mcpu or -mtune options, for example:
-mcpu=cortex-a32 or -mtune=cortex-a35.

(ryoon)

Updated security/tor-browser to 6.0.8

(ryoon)

Update to 6.0.8

* Use OpenBSD Ports distfile
* Profile directory has changed to $HOME/TorBrowser-Data
* Besed on Firefox 45.6.0

(ryoon)

gcc48: fix build with newer (e.g. pkgsrc version) gtexinfo.
should help failing CentOS builds.

(maya)

php71: add workaround requested in PR pkg/51787, pcre-jit segfaults on
non-amd64 (i386, SPARC - at least). disable it until PHP, add note that
it's mostly relevant for PCRE1 8.38, so if PHP updates to PCRE2 as they
plan, it will be irrelevant.

>From Joern Clausen / cmb@php

(maya)

php70: add workaround requested in PR pkg/51787, pcre-jit segfaults on
non-amd64 (i386, SPARC - at least). disable it until PHP, add note that
it's mostly relevant for PCRE1 8.38, so if PHP updates to PCRE2 as they
plan, it will be irrelevant.

>From Joern Clausen / cmb@php

(maya)

libvdpau: don't restrict this package to specific operating systems.
there's no reason to - other operating systems have suitable drivers too,
and it doesn't break builds as far as I can tell.

PR pkg/51704, applying as maintainer did not respond.

(maya)

Postgis no longer supports PostgreSQL < 9.2.

(fhajny)

Updated print/abcm2ps to 8.13.4

(wiz)

Updated abcm2ps to 8.13.4.

---- Version 8.13.4 - 2017-01-16 ----

Fix bad note transposition after generation restart
(reported by Fr辿d辿ric Boulanger)
Fix bad generation when decoration defined by <defs> with 'h' in <path>
Fix bad PS output when utf-8 characters in title and pango support
(reported by Timm Reasbeck)
Fix abnormal errors when many ABC source files in the command line
Fix again bad glyph for cut time meter
(reported by Timm Reasbeck)
Fix double include when xx.default.abc in command line
Fix compilation warning and bad PS %%musicfont definition
(reported by David Lacroix)

(wiz)

Updated audio/abcde to 2.8.1

(wiz)

Updated abcde to 2.8.1.

abcde 2.8.1.

* Fix silly error introduced in abcde-musicbrainz-tool when fixing bug
  30. Thanks to Thomas Klausner for the bug/patch. Closes Issue 52:
  https://abcde.einval.com/bugzilla/show_bug.cgi?id=52

-- Steve McIntyre <93sam@debian.org>  Wed, 18 Jan 2017 11:02:38 +0000

(wiz)

Added graphics/guetzli version 0.2

(wiz)

+ guetzli

(wiz)

Import guetzli-0.2 as graphics/guetzli.

Guetzli is a JPEG encoder that aims for excellent compression
density at high visual quality. Guetzli-generated images are
typically 20-30% smaller than images of equivalent quality generated
by libjpeg. Guetzli generates only sequential (nonprogressive)
JPEGs due to faster decompression speeds they offer.

(wiz)

+ ImageMagick-7.0.4.5, abcde-2.8.1, abcm2ps-8.13.4, calibre-2.77,
  fftwf-3.3.6pl1, iso-codes-3.74, libgcrypt-1.7.6, libopus-1.1.4,
  libxkbcommon-0.7.1, mcookie-2.29.1, p5-Tie-Cycle-1.222,
  p5-WebService-MusicBrainz-0.94, p5-libwww-6.16, py-numpy-1.12.0,
  py-test-runner-2.10.1, rspamd-1.4.3, tigervnc-1.7.1, vim-8.0.0211,
  vim-share-8.0.0211, x264-devel-20170121.

(wiz)

Switch khard to py-vobject 0.9.4 or newer. Bump PKGREVISION.

(wiz)

Fix dependency patterns

(markd)

Updated editors/nano to 2.7.4

(wiedi)

Update editors/nano to 2.7.4

2017.01.10 - GNU nano 2.7.4 "Red dress" undoes deletions in an orderly
manner again (bug was introduced in previous version),
sets the preferred x position for vertical movements
more consistently, avoids some scrolling problems in
softwrap mode, installs the Info manual also when your
system lacks 'makeinfo', and corrects the behavior of
the beginning-of-word anchor (\<) in regex searches.

2016.12.28 - GNU nano 2.7.3 "Ontbijtkoek" wipes away a handful of bugs:
your editor is now able to handle filenames that contain
newlines, avoids a brief flash of color when switching
between buffers that are governed by different syntaxes,
makes the Shift+Ctrl+Arrow keys select text again on a
Linux console, is more resistant against malformations
in the positionlog file, and does not crash when ^C is
typed on systems where it produces the code KEY_CANCEL.
Oh, and it no longer mistakenly warns about editing an
unlocked file just after saving a new one.  That's it.
Tastes great with thick butter.

(wiedi)

Updated misc/screen to 4.5.0

(ryoon)

Update to 4.5.0

Changelog:
Version 4.5.0 (10/12/2016):
  * Allow specifying logfile's name via command line parameter '-L'
  * Fixes:
        - broken handling of "bind u digraph U+" (bug #48691)
        - crash with long $TERM (bug #48983)
        - crash when bumping blank window
        - build for AIX (bug #49149)
        - %x improperly separating arguments
        - install with custom DESTDIR (bug #48370)

(ryoon)

Updated chat/weechat to 1.7

(ryoon)

Update to 1.7

Changelog:
[[v1.7]]
== Version 1.7 (2017-01-15)

New features::

  * core: add option weechat.look.align_multiline_words (issue #411, issue #802)
  * core: add optional command prefix in completion templates "commands", "plugins_commands" and "weechat_commands"
  * core: add optional arguments in completion template, sent to the callback
  * core: add option "time" in command /debug
  * api: add info "uptime" (WeeChat uptime)
  * api: add info "pid" (WeeChat PID) (issue #850)
  * fifo: add file fifo.conf and option fifo.file.path to customize FIFO pipe path/filename (issue #850)
  * irc: add server option "usermode" (issue #377, issue #820)
  * irc: add tag "self_msg" on self messages (issue #840)

Improvements::

  * core, xfer: display more information on fork errors (issue #573)
  * core: add a slash before commands completed in arguments of /command, /debug time, /key bind, /key bindctxt, /mute, /repeat, /wait
  * core: add a warning in header of configuration files to not edit by hand (issue #851)
  * alias: add a slash before commands completed in arguments of /alias
  * exec: add option "-oc" in command /exec to execute commands in process output, don't execute commands by default with "-o" (issue #877)
  * irc: evaluate content of server option "ssl_fingerprint" (issue #858)
  * irc: change default value of option irc.network.lag_reconnect from 0 to 300 (issue #818)
  * trigger: do not hide email in command "/msg nickserv register password email" (issue #849)

Bug fixes::

  * core: fix deadlock when quitting after a signal SIGHUP/SIGQUIT/SIGTERM is received (issue #32)
  * core: fix display of empty lines in search mode (issue #829)
  * api: fix crash in function string_expand_home() when the HOME environment variable is not set (issue #827)
  * exec: fix memory leak in display of process output
  * irc: fix option "-temp" in command /server (issue #880)
  * irc: fix close of server channels which are waiting for the JOIN when the server buffer is closed (issue #873)
  * irc: fix buffer switching on manual join for forwarded channels (issue #876)
  * irc: add missing tags on CTCP message sent
  * lua: fix integers returned in Lua >= 5.3 (issue #834)
  * relay: make HTTP headers case-insensitive for WebSocket connections (issue #888)
  * relay: set status to "authentication failed" and close immediately connection in case of authentication failure in weechat and irc protocols (issue #825)
  * script: reload a script after upgrade only if it was loaded, set autoload only if the script was auto-loaded (issue #855)

Build::

  * core, irc, xfer: fix compilation on Mac OS X (add link with resolv) (issue #276)
  * core: add build of xz package with make dist (cmake)
  * tests: fix compilation of tests on FreeBSD 11.0

(ryoon)

Fixed spelling of NetBSD in mail addresses.

(rillig)

Fixed PKGREVISION to be only defined directly in the package Makefile.

(rillig)

Removed misplaced PKGREVISION (didn't have any effect anyway).

(rillig)

Updated chat/ejabberd to 17.01

(fhajny)

Update chat/ejabberd to 17.01

Most relevant changes:

Admin
- Add example api_permissions: definition to config template
- Allow old-stype mod_vcard_ldap in the config
- Fix migration of old pubsub database (migrating from 2.1.x)
- Get nodes from ejabberd_cluster instead of mnesia
- mod_configure: Fix configuration commands

Core
- Fix case clauses when using compression
- Set from/to in every routed packet
- Correctly process errors from new cyrsasl API
- Improve return values in cyrsasl API

Modules
- mod_http_bind: remove and migration code to mod_bosh
- mod_muc: Allow a subscriber to create room, then set
  allow_subscription=true
- mod_muc: Support legacy muc#roomconfig values
- mod_offline: Decode message before checking for expiration

Mnesia
- Let ejabberd_mnesia handles copy_type
- Fix index processing
- Speedup table setup, no i/o if EJABBERD_SCHEMA_PATH not set

SQL
- Add SSL support for SQL connections with PostgreSQL 1.1.2+
- Cope with malformed values in 'rosterusers' SQL table
- Improve tag insertion, avoid duplication

(fhajny)

Updated net/erlang-xmpp to 1.1.5

(fhajny)

Update net/erlang-xmpp to 1.1.5.

- Fix translation order
- Add legacy auth stream feature support
- Better support subtags with empty namespaces
- Add dialback feature support
- Fix error generation for raw xml elements
- Treat unknown message type as "normal"
- Allow including #text{} elements into #sm_failed{}
- Add xmpp:del_meta/2 function
- Fix typo in add_delay_info/4
- Make it possible to get text by lang
- Don't crash if previous delay tag misses 'from' attribute

(fhajny)

Updated textproc/erlang-fast_yaml to 1.0.8

(fhajny)

Update textproc/erlang-fast_yaml to 1.0.8.

- Load local .so instead from system package when running tests.

(fhajny)

Updated textproc/erlang-fast_xml to 1.1.19

(fhajny)

Update textproc/erlang-fast_xml to 1.1.19.

- Add checks for empty string
- Remove unused code
- Load locally build .so file when performing tests

(fhajny)

Updated security/erlang-fast_tls to 1.0.10

(fhajny)

Update security/erlang-fast_tls to 1.0.10.

- Add ability to use system installed deps instead fetching them from git.

(fhajny)

Updated devel/erlang-ezlib to 1.0.2

(fhajny)

Update devel/erlang-ezlib to 1.0.2.

- Do not throw badarg exception on closed port.

(fhajny)

Updated devel/erlang-cache_tab to 1.0.6

(fhajny)

Update devel/erlang-cache_tab to 1.0.6.

- Add dirty_dist_insert and dirty_dist_delete calls.

(fhajny)

Recursive revbump from audio/pulseaudio-10.0

(ryoon)

Updated databases/erlang-p1_pgsql to 1.1.2

(fhajny)

Update databases/erlang-p1_pgsql to 1.1.2.

- Add SSL support.

(fhajny)

Updated math/fftw to 3.3.6

(adam)