Updated waf to 1.9.7.

NEW IN WAF 1.9.7
----------------
* Conceal Python 2.6 subprocess errors on Unix-like systems
* Read variables from self.vars #1873
* Revert archive permissions to be world-readable #1875

(wiz)

Updated fonts/unifont to 9.0.05

(wiz)

Updated unifont to 9.0.05.

2016-12-10: Release 9.0.05

  Modified Cherokee glyphs to reflect changes in recent Cherokee font
  that the Unicode Consortium adopted for its code charts.  Removed
  serifs to make Cherokee glyphs easier to read.

  Modified Pikto CSUR glyphs after comparison with high-resolution scans
  of Basic Pikto book.

(wiz)

Updated devel/py-setuptools to 32.1.0

(wiz)

Updated py-setuptools to 32.1.0.

v32.1.0
-------

* #891: In 'test' command on test failure, raise DistutilsError,
  suppression invocation of subsequent commands.

v32.0.0
-------

* #890: Revert #849. ``global-exclude .foo`` will not match all
  ``*.foo`` files any more. Package authors must add an explicit
  wildcard, such as ``global-exclude *.foo``, to match all
  ``.foo`` files. See #886, #849.

v31.0.1
-------

* #885: Fix regression where 'pkg_resources._rebuild_mod_path'
  would fail when a namespace package's '__path__' was not
  a list with a sort attribute.

v31.0.0
-------

* #250: Install '-nspkg.pth' files for packages installed
  with 'setup.py develop'. These .pth files allow
  namespace packages installed by pip or develop to
  co-mingle. This change required the removal of the
  change for #805 and pip #1924, introduced in 28.3.0 and implicated
  in #870, but means that namespace packages not in a
  site packages directory will no longer work on Python
  earlier than 3.5, whereas before they would work on
  Python not earlier than 3.3.

(wiz)

Updated devel/py-mccabe to 0.5.3

(wiz)

Updated py-mccabe to 0.5.3.

0.5.3 - 2016-12-14

    Report actual column number of violation instead of the start of the line

(wiz)

Updated devel/py-dulwich to 0.15.0

(wiz)

Updated py-dulwich to 0.15.0.

0.15.0 2016-10-09

BUG FIXES

  * Allow missing trailing LF when reading service name from
    HTTP servers. (Jelmer Vernooij, Andrew Shadura, #442)

  * Fix dulwich.porcelain.pull() on Python3. (Jelmer Vernooij, #451)

  * Properly pull in tags during dulwich.porcelain.clone.
    (Jelmer Vernoo蝶, #408)

CHANGES

  * Changed license from "GNU General Public License, version 2.0 or later"
    to "Apache License, version 2.0 or later or GNU General Public License,
    version 2.0 or later". (#153)

IMPROVEMENTS

  * Add ``dulwich.porcelain.ls_tree`` implementation. (Jelmer Vernooij)

(wiz)

Updated security/py-cryptography to 1.7.1

(wiz)

Updated py-cryptography to 1.7.1.

1.7.1 - 2016-12-13
~~~~~~~~~~~~~~~~~~

* Fixed a regression in ``int_from_bytes`` where it failed to accept
  ``bytearray``.

1.7 - 2016-12-12
~~~~~~~~~~~~~~~~

* Support for OpenSSL 1.0.0 has been removed. Users on older version of OpenSSL
  will need to upgrade.
* Added support for Diffie-Hellman key exchange using
  :meth:`~cryptography.hazmat.primitives.asymmetric.dh.DHPrivateKeyWithSerialization.exchange`
* The OS random engine for OpenSSL has been rewritten to improve compatibility
  with embedded Python and other edge cases. More information about this change
  can be found in the
  `pull request <https://github.com/pyca/cryptography/pull/3229>`_.

(wiz)

Updated devel/py-ZopeInterface to 4.3.3

(wiz)

Updated py-ZopeInterface to 4.3.3.

4.3.3 (2016-12-13)
------------------

- Correct typos and ReST formatting errors in documentation.

- Add API documentation for the adapter registry.

- Ensure that the ``LICENSE.txt`` file is included in built wheels.

- Fix C optimizations broken on Py3k.  See the Python bug at:
  http://bugs.python.org/issue15657
  (https://github.com/zopefoundation/zope.interface/issues/60)

(wiz)

Updated devel/meld to 3.16.4

(wiz)

Updated meld to 3.16.4.

2016-12-18 meld 3.16.4
======================

  Fixes:

  * Make error displaying more robust with non-ASCII locales (Vasily Galkin)
  * Handle themes with scrollbar steppers better (Kai Willadsen)
  * Fix a traceback when pane has no file (Claude Paroz)
  * Fix triggering "Delete Change" actions from menu (Kai Willadsen)
  * Handle style theme not existing (Patrick Griffis)
  * Fix unintentional glib requirement bump (Kai Willadsen)

  Translations:

  * Claude Paroz (fr)

(wiz)

Updated devel/gmp to 6.1.2

(wiz)

Updated gmp to 6.1.2.

Changes between GMP version 6.1.1 and 6.1.2

  BUGS FIXED
  * Mini-GMP: Fixed a division bug, which on a machine with 64-bit
    unsigned long affects approximately 1 out of 2^32 divisors.

  * Mini-GMP: Fix mpz_set_str crash on inputs with a large number of
    leading zeros. Also stricter input validation, rejecting inputs
    with no digits.

  FEATURES
  * Handle more systems which require PIC code in static libraries (e.g.,
    "hardened" Gentoo and Debian 9).

  * Configuration for arm (-32 and -64) has been rewritten, fixing poor
    code selection for many CPUs.

  * Mini-GMP: Updated to the latest development version, including
    new functions mpn_com and mpn_neg.

  SPEEDUPS
  * None, except for arm CPUs affected by the configuration rewrite.

(wiz)

Updated print/cups-filters to 1.13.1

(wiz)

Updated cups-filters to 1.13.1.

CHANGES IN V1.13.1

- cups-browsed: Avoid erroring out when restarting after a
  crash (with generated queues not deleted due to the crash)
  and the configuration option
  CreateRemoteCUPSPrinterQueues=No being set.
- cups-browsed: If CUPS is stopped while cups-browsed is
          running and there are queue for IPP network printers (not
          remote CUPS queues) on restart of CUPS the still existing
          local CUPS queue is not correctly re-connected with
          cups-browsed and therefore gets removed after a
          timeout. This should be fixed after a clean-up of
          re-connecting with remaining queues from a previous session
          (Debian bug #848223).
- cups-browsed: Generated queues did not get removed on
          shutdown (Debian bug #848167).
- libcupsfilters: Let PPD generator for driverless printing
  suppress page sizes which the printer reports more than
  once (CUPS Issue #4933).
- driverless, libcupsfilters: Make "driverless list" output
  and output of driverless as CUPS backend in discovery mode
  add the word "driverless" to its output, to make it easier
  to set up driverless printers with printer setup tools.
  Made the NickName of the generated PPDs also match with the
  "driverless list" output.

CHANGES IN V1.13.0

- cups-browsed: Use the httpGetAddr() only with CUPS 2.0.x or
  newer, as older CUPS versions do not provide it (Bug #1381).
- cups-browsed: Minor corrections in the handling of the data
  records of the discovered printers.
- rastertopdf, urftopdf: As with libcupsimage from CUPS 2.2.2
  on rastertopdf also understands Apple Raster and much better
  than urftopdf does, use rastertopdf for Apple Raster
  (image/urf) input files then. Also allow for manually
  choosing by the ./configure command line.
- driverless: Added a CUPS backend mode to the driverless
  utility. Running as a CUPS backend in discovery mode it
  lists the IPP URIs of the suitable printers in printer setup
  tools and in "lpinfo -v", as conneting via IPP is required
  for driverless printing.

(wiz)

Updated audio/chromaprint to 1.4.1

(wiz)

Updated chromaprint to 1.4.1.

Version 1.4.1 -- December 12, 2016
==================================

- Restored the -v/-version parameter for fpcalc that got accidentally removed in 1.4.
- Fixed processing of some short audio files. They were ignored in 1.4.
- The DURATION field in the default output of fpcalc is now printed as an integer again.
- Added missing version number to libchromaprint.pc.
- Mac OS X fpcalc builds are done with clang/libc++ and should work on 10.7+.
- Linux fpcalc builds are now fully static.

(wiz)

libaudiofile: fix the second UB in the same line of code, cstatic which
isn't actually a cstatic. switch to just defining it in the accessor.
GCC optimized this UB away leading to an undefined reference in the builds.

Also use a function which is right for int32 too (same as upstream)

Thanks joerg for the help

(maya)

libaudiofile: different way of doing the same operation, it's unclear
to me why it fails for others, but maybe this one works.

(maya)

Bump revision of all packages using libform, libpanel or libmenu as the
library name in devel/ncurses changed.

(joerg)

Bump revision for devel/ncurses soname change. Drop NetBSD-7 from the
incompat list now that the conflict has been resolved.

(joerg)

Rename ncurses's libform, libpanel and libmenu to libgnuform,
libgnupanel and libgnumenu as they overlap with system libraries on
NetBSD, resulting in strange breakage like in devel/cmake's ccmake
frontend.

(joerg)

Updated net/youtube-dl to 20161218

(leot)

Note remove of www/contao42 package.

(taca)

Update net/youtube-dl to youtube-dl-20161218

Changes:
version 2016.12.18

Core
+ [extractor/common] Recognize DASH formats in html5 media entries

Extractors
+ [ccma] Add support for ccma.cat (#11359)
* [laola1tv] Improve extraction
+ [laola1tv] Add support embed URLs (#11460)
* [nbc] Fix extraction for MSNBC videos (#11466)
* [twitch] Adapt to new videos pages URL schema (#11469)
+ [meipai] Add support for meipai.com (#10718)
* [jwplatform] Improve subtitles and duration extraction
+ [ondemandkorea] Add support for ondemandkorea.com (#10772)
+ [vvvvid] Add support for vvvvid.it (#5915)

version 2016.12.15

Core
+ [utils] Add convenience urljoin

Extractors
+ [openload] Recognize oload.tv URLs (#10408)
+ [facebook] Recognize .onion URLs (#11443)
* [vlive] Fix extraction (#11375, #11383)
+ [canvas] Extract DASH formats
+ [melonvod] Add support for vod.melon.com (#11419)

version 2016.12.12

Core
+ [utils] Add common user agents map
+ [common] Recognize HLS manifests that contain video only formats (#11394)

Extractors
+ [dplay] Use Safari user agent for HLS (#11418)
+ [facebook] Detect login required error message
* [facebook] Improve video selection (#11390)
+ [canalplus] Add another video id pattern (#11399)
* [mixcloud] Relax URL regular expression (#11406)
* [ctvnews] Relax URL regular expression (#11394)
+ [rte] Capture and output error message (#7746, #10498)
+ [prosiebensat1] Add support for DASH formats
* [srgssr] Improve extraction for geo restricted videos (#11089)
* [rts] Improve extraction for geo restricted videos (#4989)

(leot)

Delete contao42 from pkgsrc since it is EOL.

(taca)

Remove contao42.

(taca)

Updated audio/mpg123 to 1.23.8

(adam)

Updated pkgtools/pbulk to 0.65

(joerg)

pbulk-0.65: Add basic support for specifying chroot'd clients by
absolute path. Introduce hook for setting up the chroot
(client_prepare_chroot) similar to client_prepare_action for ssh
clients.

(joerg)

Changes 1.23.8:
- Fix long-standing bad memory read (via integer underflow) in ID3 parser
  for crafted ID3v2 tags with tiny size information

(adam)

pbulk-0.64:
Ensure to reset port after each loop, so that "client" and "client:port"
notation can be mixed.

(joerg)

pbulk-0.63:
Introduce a separate client-prepare script. The default configuration
runs the renamed client_prepare_action for each scan/build client once,
dropping duplicates in the list. Clients are prepared in parallel, but
the master waits for all before starting the actual scan. Make
bulkbuild-restart re-prepare the clients, i.e. in case they have a
pkgsrc tree in a local tmpfs.

(joerg)

also disable fiber when using clang on NetBSD due to lack of thread_local

(tnn)

Updated security/gnupg21 to 2.1.16

(tnn)

Update to gnupg21-2.1.16.

* gpg: New algorithm for selecting the best ranked public key when
  using a mail address with -r, -R, or --locate-key.
* gpg: New option --with-tofu-info to print a new "tfs" record in
  colon formatted key listings.
* gpg: New option --compliance as an alternative way to specify
  options like --rfc2440, --rfc4880, et al.
* gpg: Many changes to the TOFU implementation.
* gpg: Improve usability of --quick-gen-key.
* gpg: In --verbose mode print a diagnostic when a pinentry is
  launched.
* gpg: Remove code which warns for old versions of gnome-keyring.
* gpg: New option --override-session-key-fd.
* gpg: Option --output does now work with --verify.
* gpgv: New option --output to allow saving the verified data.
* gpgv: New option --enable-special-filenames.
* agent, dirmngr: New --supervised mode for use by systemd and alike.
* agent: By default listen on all available sockets using standard
  names.
* agent: Invoke scdaemon with --homedir.
* dirmngr: On Linux now detects the removal of its own socket and
  terminates.
* scd: Support ECC key generation.
* scd: Support more card readers.
* dirmngr: New option --allow-version-check to download a software
  version database in the background.
* dirmngr: Use system provided CAs if no --hkp-cacert is given.
* dirmngr: Use a default keyserver if none is explicitly set
* gpgconf: New command --query-swdb to check software versions
  against an copy of an online database.
* gpgconf: Print the socket directory with --list-dirs.
* tools: The WKS tools now support draft version -02.
* tools: Always build gpg-wks-client and install under libexec.
* tools: New option --supported for gpg-wks-client.
* The log-file option now accepts a value "socket://" to log to the
  socket named "S.log" in the standard socket directory.
* Provide fake pinentries for use by tests cases of downstream
  developers.
* Fixed many bugs and regressions.
* Many changes and improvements for the test suite.

(tnn)

Provide consistent visibility for forward declarations.

(joerg)

Deal with Jasper fallout.

(joerg)

Don't check sign of pointers.

(joerg)

Revbump for security/ykclient.

(joerg)

Updated security/ykclient to 2.13nb3

(joerg)

Rename hmac to ykhmac. Bump library version.

(joerg)

Don't try to check the sign of pointers.

(joerg)

Rename hmac to bghmac. Bump revision.

(joerg)

Use semantic markup, unbreak build with newer texinfo. Bump revision.

(joerg)

add TEST_TARGET

(tnn)

Updated net/synergy to 1.8.6

(tnn)

Update to synergy-1.8.6

Bug #5592 - Some keys don't work for macOS Sierra clients
Bug #5186 - Cursor stuck on client when using multi-DPI server
Bug #5722 - Malformed serial key in registry will crash GUI on startup
Bug #5752 - Tab order is incorrect on Settings dialog
Enhancement #5699 - Unified installers on macOS
Feature #4836 - macOS Sierra build
Bug #5680 - Server crashes when disconnecting SSL clients
Bug #5626 - Build fails using Xcode 8 and macOS SDK 10.12
Feature #5657 - Trial version support
Feature #5707 - User upgrade statistics

(tnn)

Updated games/openttd to 1.6.1

(tnn)

The latest ICU update broke OpenTTD so update openttd to 1.6.1 to fix that.

Changes: build fixes, NewGRF tweaks and GUI tweaks.

(tnn)

ansiweather: install to the mandir. you saw nothing.
appease pkglint a little.

(maya)

Adjust simh entry to reflect the pkg version that appears on install

(maya)

Note update of logswan and ansiweather

(maya)

ansiweather: update to 1.09

Added man page, -v flag for version.
License is now 2-clause BSD (dropped third BSD clause).

from fcambus (author)

(maya)

logswan: update to 1.06.

Changed license to 2-clause BSD (from 3-clause)
Minor code shuffling.

>From fcambus (author)

(maya)

+ chromaprint-1.4.1, cups-filters-1.13.1, gmp-6.1.2, jasper-2.0.6,
  meld-3.16.4, musicpd-0.19.21, poppler-0.50.0, py-ZopeInterface-4.3.3,
  py-cryptography-1.7.1, py-dulwich-0.15.0, py-mccabe-0.5.3,
  py-setuptools-32.1.0, unifont-9.0.05, vim-8.0.0134, vim-share-8.0.0134,
  waf-1.9.7, wireshark-2.2.3, x264-devel-20161217.

(wiz)

update MASTER_SITES

(zafer)

Fixed pkglint warnings.

(rillig)

Fixed pkglint warnings. Bumped PKGREVISION.

The user name is configurable now.

(rillig)

Fixed pkglint warnings.

(rillig)

+ p5-IO-Socket-SSL-2.040, p5-Test-Simple-1.302071.

(wiz)

Fixed pkglint warnings.

(rillig)

Updated emulators/simh to 7964e2b72d9

(hans)

There haven't been any simh releases in years, so convert this package
to take a snapshot from github. Update to 7964e2b72d9.

Changes: too many to list them all, full list of changes is available at
https://github.com/simh/simh/blob/master/README.md

Highlights:
- many new simulators
- simulator front panel API
- VAXstation video display simulation using SDL
- UDP and NAT packet transports
- scripting support

(hans)

Regen, correction to digest value

(mef)

pbulk-0.62: cleanup if either the initial pkg_add round or the package
upload failed.

(joerg)

Updated www/php-owncloud to 9.1.3

(wen)

Update to 9.1.3
Update DEPENDS(upstream dropped php-5.3 support)

Upstream changes:
Version 9.1.3 Dec 13 2016

    [major] UI: File list now works properly with many hidden entries - core/#26518
    [major] Transfer ownership fails in some sharing scenario - core/#26523
    [major] Transfer ownership fails if external storage with user-specified password - core/#26530
    [major] Transfer ownership fails with file shares with invalid permissions - core/#26541
    [major] Transfer ownership must skip trashed shares - core/#26525
    [major] Versions on external storage never expire - core/#24161
    [major] Properly convert public upload OCS params - core/#26691
    [major] Properly load object store apps at install time when required in config - core/#26299
    [major] Fix issue in sharing API that can happen with Galera Cluster - core/#26700
    [major] Cannot delete file in share link from global external storage - core/#25618
    [major] Fix issue where first run wizard made web UI unusable in IE11 - core/#26438
    [major] Cannot upload to federated share when only create/update permission given - core/#26173
    [major] Auth header in new DAV endpoint can break with Windows Webdav - core/#26412
    [minor] Transfer ownership don't bail out on error - core/#26524
    [minor] Don't scan received shares in OCC files scan or background jobs - core/#26590
    [minor] Remove useless warning in log when accessing public shares - core/#25455
    [minor] Fix disappearance of share info when clicking favorite star - core/#26241
    [minor] Don't bother fetching preview images if previews disabled in config.php - core/#26705

Version 9.1.2 Nov 8 2016

    Core: Adjusted documentation link to issue template - core/#26087
    Core: Display feedback in users page when changing password - core/#25532
    Core: Fix mime type detection in hidden directories - core/#26133
    Core: Change forum URL to central - core/#25644
    Core: Fix share array format passed to "post_unshareFromSelf" hook - core/#26390
    Core: Release mount info memory after running background jobs - core/#26223
    Core: Improve users page performance by not sorting after every add - core/#26234
    Core: Escape special chars in some queries - core/#25429
    Core: Redirect to two factor challenge page when only a single provider exists - core/#26134
    Core: Fix bogus PasswordLoginForbidden DAV error when logging in as non-existing user - core/#26123
    Core: Change the minimum log level to FATAL - core/#26131
    Core: Fix issue with "(2)" appearing on shares when querying avatar with wrong casing - core/#26271
    Core: Enabling an app now also analyzes dependencies at this time instead of only at install - core/#26295
    Core: Reuse cached app info to avoid high load on some environments - core/#25603
    Core: Show warning instead of exception when trying to run ownCloud on Windows - core/#26208
    Core: Fix misleading SSL/TLS SMTP email configuration - core/#26447
    Core: Fix malformed attribute in files app page - core/#26480
    DAV: Improve chunk assembly performance for new DAV endpoint - core/#26062
    DAV: New chunking now returns Etag and OC-Etag on the final MOVE - core/#25682
    DAV: Do not print exception messages in HTML - core/#26460
    DAV: Sanitize length headers when validating quota - core/#26366
    Files: Allow uploading empty files in the web UI - core/#19116
    Files: Properly translate file summary in lists - core/#26221
    Files: Exclude more invalid chars in path - core/#26461
    Sharing: Let the share owner increase permissions - core/#25542
    Federation: Fix sharing with remote user names containing spaces - core/#25955
    Federation: Save some memory in sync job by releasing mount info after each user - core/#26204
    Federation: Fix federated address book syncing by using the correct background job name - core/#26202
    CalDAV: Add Schedule and IMip plugins when receiving webdav v1 api calendar calls - core/#23600
    CardDAV: Unset photo before setting a new one - core/#26242
    CardDAV: Fix for birthday entries - core/#25636
    CardDAV: Limit image export mime types - core/#26459
    Updater: Fix web UI update in some environments - updater/#378
    Updater: Retrigger integrity check after update - updater/#405
    User_LDAP: Added OCC command to update group mappings - user_ldap/#14
    User_LDAP: Fix issue with "(2)" appearing on shares when refreshing users in some scenarios - core/#25718
    User_external: Double verify the SMB response - apps/#2198
    Firstrunwizard: Only display the wizard when in files app - firstrunwizard/#52
    Gallery: Do not display technical error messages - gallery/#707

(wen)

Add patch for compiling with emacs26 (26.0.50) -- strict syntax check.

(mef)

Updated ham/xlog to 2.0.14

(mef)

Updated ham/xlog to 2.0.14
--------------------------
- Changes for xlog version 2.0.14 - 2016-dec-11
  * Updated cty.dat to 20161124 (cty-2614)
  * Fixed compiler error with new gcc, in adif.c, with unused variable
    * GCC Bug #28901, https://gcc.gnu.org/bugzilla/show_bug.cgi?id=28901
  * Fixed math library linker issue exposed by recent gcc change
  * Updated the author's email address
  * Fixed a GUI bug in Settings->Dialogs and Windows->Scoring
    (thanks, Andrew N2CN for the patch)
  * Hamlib preference setting now understands /dev/serial/by-id
  * Hamlib preference setting shows all /dev/ttyUSB* that are present
  * Fixed crash with Select a Radio dialog in Hamlib preferences

(pkgsrc changes)
- Dropped patch-src_logfile_adif2.c, seems now has fix, see above.
  (but not confirmed with clang yet, sorry)
- Add following line, pkglint asks for the line
  .include "../../graphics/gnome-icon-theme/buildlink3.mk"

(mef)

Note update of www/squid3 package to 3.5.23.

(taca)

Update squid to 3.5.23, including security fixes.

Changes to squid-3.5.23 (16 Dec 2016):

- Bug 4627: fix generate-host-certificates and dynamic_cert_mem_cache_size docs
- Bug 4620: NetBSD build error with --enable-ipf-transparent
- Bug 4567: Strange IPv6 shown in access.log
- Bug 4406: SIGSEV in TunnelStateData::handleConnectResponse() during reconfigure and restart
- Bug 4174 partial: fix Write.cc:41 "!ccb->active()" assertion.
- Bug 4169: HIT marked as MISS when If-None-Match does not match
- Bug 4007: Hang on DNS query with dead-end CNAME
- Bug 4004 partial: Fix segfault via Ftp::Client::readControlReply
- Bug 3940 partial: hostHeaderVerify failures MISS when they should be HIT
- Bug 3533: Cache still valid after HTTP/1.1 303 See Other
- Bug 3379: Combination of If-Match and a Cache Hit result in TCP Connection Failure
- Bug 3290: authenticate_ttl not working for digest authentication
- Bug 2258: bypassing cache but not destroying cache entry
- HTTP/1.1: make Vary:* objects cacheable
- HTTP/1.1: Add registered codes entry for new 103 (Early Hints) status code
- Support IPv6 NAT with PF for NetBSD and FreeBSD
- TLS: Make key= before cert= an error instead of quietly hiding the issue
- ... and some debug updates
- ... and some build fixes
- ... and several documentation updates

(taca)

Updated ham/fldigi to 3.23.18

(mef)

Updated ham/fldigi to 3.23.18
-----------------------------
=Version 3.23.18=
2016-12-11  David Freese  <iam_w1hkj@w1hkj.com>
        782204c: DXcluster sort
        73c2d1e: LoTW
        dc9c107: Socket Connect State

=Version 3.23.17=
        e0eaaef: dxcluster update
        a81372a: GPIO update
        99b0d1b: LoTW documentation
        214a782: Time Of Day Clock
        839eb0f: FSQ Heard parser

=Version 3.23.16=
        df67d85: N3FJP rounding
        dd5dc22: GPIO PTT
        03b95b5: lotw/eqsl interface
        360209b: Resident help
        4e905b6: ARQ Client vector
        66a62fc: Rx Extract

(mef)

Updated math/R-gtools to 3.5.0

(wen)

Update to 3.5.0

Upstream changes:
gtools 3.5.0 - 2015-04-28
-------------------------

New Functions:

- New roman2int() functon to convert roman numerals to integers
  without the range restriction of utils::as.roman().

- New asc() and chr() functions to convert between ASCII codes and
  characters. (Based on the 'Data Debrief' blog entry for 2011-03-09
  at http://datadebrief.blogspot.com/2011/03/ascii-code-table-in-r.html).

- New unByteCode() and unByteCodeAssign() functions to convert a
  byte-code functon to an interpeted code function.

- New assignEdgewise() function for making assignments into locked
  environments. (Used by unByteCodeAssign().)

Enhacements:

- mixedsort() and mixedorder() now have arguments 'decreasing',
  'na.last', and 'blank.last' arguments to control sort ordering.

- mixedsort() and mixedirdeR() now support Roman numerals via the
  arguments 'numeric.type', and 'roman.case'.  (Request by David
  Winsemius, suggested code changes by Henrik Bengtsson.)

- speed up mixedorder() (and hence mixedsort()) by moving
  suppressWarnings() outside of lapply loops. (Suggestion by Henrik
  Bengtsson.)

- The 'q' argument to quantcut() now accept an integer
  indicating the number of equally spaced quantile groups to
  create. (Suggestion and patch submitted by Ryan C. Thompson.)

Bug fixes:

- Removed stray browser() call in smartbind().

- ddirichlet(x, alpha) was incorrectly returning NA when for any i,
  x[i]=0 and alpha[i]=1.  (Bug report by John Nolan.)

Other changes:

- Correct typographical errors in package description.

gtools 3.4.2 - 2015-04-06
-------------------------

New features:

- New function loadedPackages() to display name, version, and path of
  loaded packages (package namespaces).

- New function: na.replace() to replace missing values within a
  vector with a specified value.`

Bug fixes:

- Modify keywords() to work properly in R 3.4.X and later.

gtools 3.4.1 - 2014-05-27
-------------------------

Bug fixes:

- smartbind() now converts all non-atomic type columns (except factor)
  to type character instead of generating an opaque error message.

Other changes:

- the argument to ASCIIfy() is now named 'x' instead of 'string'.

- minor formatting changes to ASCIIfy() man page.

gtools 3.4.0 - 2014-04-14
-------------------------

New features:

- New ASCIIfy() function to converts character vectors to ASCII
  representation by escaping them as \x00 or \u0000 codes.
  Contributed by Arni Magnusson.

gtools 3.3.1 - 2014-03-01
-------------------------

Bug fixes:

- 'mixedorder' (and hence 'mixedsort') not properly handling
  single-character strings between numbers, so that '1a2' was being
  handled as a single string rather than being properly handled as
  c('1', 'a', '2').

gtools 3.3.0 - 2014-02-11
-------------------------

New features:

- Add the getDependencies() function to return a list of dependencies
  for the specified package(s).  Includes arguments to control whether
  these dependencies should be constructed using information from
  locally installed packages ('installed', default is TRUE), avilable
  CRAN packages ('available', default is TRUE) and whether to include
  base ('base', default=FALSE) and recommended ('recommended', default
  is FALSE) packages.

Bug fixes:

- binsearch() was returning the wrong endpoint & value when the found
  value was at the upper endpoint.

gtools 3.2.1 - 2014-01-13
-------------------------

Bug fixes:

- Resolve circular dependency with gdata

gtools 3.2.0 - 2014-01-11
-------------------------

New features:

- The keywords() function now accepts a function or function name as
  an argument and will return the list of keywords associated with the
  named function.

- New function stars.pval() which will generate p-value significance
  symbols ('***', '**', etc.)

Bug fixes:

- R/mixedsort.R: mixedorder() was failing to correctly handle numbers
  including decimals due to a faulty regular expression.

Other changes:

- capture() and sprint() are now defunct.

gtools 3.1.1 - 2013-11-06
-------------------------

Bug fixes:

- Fix problem with mixedorder/mixedsort when there is zero or one
  elements in the argument vector.

gtools 3.1.0 - 2013-09-22
-------------------------

Major changes:

- The function 'addLast()' (deprecated since gtools 3.0.0) is no
  longer available, and has been marked defunct.

Bug fixes:

- Modified 'mixedorder()' to use Use 'suppressWarnings() instead of
  'options(warn=-1)'.  This will avoid egregious warning messages when
  called from within a nested environment, such as when run from
  within 'knitr'

gtools 3.0.0 - 2013-07-06
-------------------------

Major changes:

- The function 'addLast()' has been deprecated because it directly
  manipulates the global environment, which is expressly prohibited by
  the CRAN policies.

- A new function, 'lastAdd()' has been created to replace 'addLast()'.
  The name has been changed because the two functions require
  different syntax. 'addLast()' was used like this:

    byeWorld <- function() cat("\nGoodbye World!\n")
    addLast(byeWorld)

  The new 'lastAdd()' function is used like this:

    byeWorld <- function() cat("\nGoodbye World!\n")
    .Last <- lastAdd(byeWorld)

Bug fixes:

- Update checkRVersion() to work with R version 3.0.0 and later.

Other changes:

- Remove cross-reference to (obsolete?) moc package

- The function 'assert()' (deprecated since gtools 2.5.0) is no longer
  available and has been marked defunct.

gtools 2.7.1 - 2013-03-17
-------------------------

Bug fixes:

- smartbind() was not properly handling factor columns when the first
  data frame did not include the relevant column.

gtools 2.7.0 - 2012-06-19
-------------------------

New features:

- smartbind() has a new 'sep' argument to allow specification of the
  character(s) used to separate components of constructed column names

- smartbind() has a new 'verbose' argument to provide details on how
  coluumns are being processed

Bug fixes:

- smartbind() has been enhanced to improve handling of factor and
  ordered factor columns.

(wen)

Updated textproc/R-yaml to 2.1.14

(wen)

Update to 2.1.14

Upstream changes:
v2.1.14
  - mark character input/output as UTF-8 (patch submitted by Yihui Xie)
  - update LibYAML to 0.1.7

(wen)

Updated textproc/R-formatR to 1.4

(wen)

Update to 1.4

Upstream changes:
CHANGES IN formatR VERSION 1.4

NEW FEATURES

  o `tidy_source()` can preserve line breaks in character strings in source code

MAJOR CHANGES

  o the deprecated functions tidy.source(), tidy.dir(), and tidy.eval() have
  been removed; use tidy_source(), tidy_dir() and tidy_eval() instead

  o comments that begin with `#+` or `#-` are no longer wrapped; such comments
  are treated as knitr chunk options in `knitr::spin()` (#52)

BUG FIXES

  o `tidy_source()` should not write an extra space to the last line of code
  (thanks, @mr-karan, #49)

  o long strings (> 1000 characters) in source code can be preserved now
  (thanks, @jholtman, #50)

  o `tidy_source()` might move any lines of code starting with `else` back to
  the previous lines (thanks, @Auburngrads, #51)

(wen)

Updated textproc/R-stringr to 1.1.0

(wen)

Update to 1.1.0

Upstream changes:
stringr 1.1.0

    Add sample datasets: fruit, words and sentences.

    fixed(), regex(), and coll() now throw an error if you use them with anything other than a plain string (#60). I've clarified that the replacement for perl() is regex() not regexp() (#61). boundary() has improved defaults when splitting on non-word boundaries (#58, @lmullen).

    str_detect() now can detect boundaries (by checking for a str_count() > 0) (#120). str_subset() works similarly.

    str_extract() and str_extract_all() now work with boundary(). This is particularly useful if you want to extract logical constructs like words or sentences. str_extract_all() respects the simplify argument when used with fixed() matches.

    str_subset() now respects custom options for fixed() patterns (#79, @gagolews).

    str_replace() and str_replace_all() now behave correctly when a replacement string contains $s, \\\\1, etc. (#83, #99).

    str_split() gains a simplify argument to match str_extract_all() etc.

    str_view() and str_view_all() create HTML widgets that display regular expression matches (#96).

    word() returns NA for indexes greater than number of words (#112).

(wen)

Updated devel/R-evaluate to 0.10

(wen)

Update to 0.10

Upstream changes:
Version 0.10
------------------------------------------------------------------------------

* Added option for the evaluate function to include timing information of ran
  commands. This information will be subsequently rendered by the replay.
  Example usage:
  evaluate::replay(evaluate::evaluate('Sys.sleep(1)', include_timing = TRUE))

* Added a new function `flush_console()` to emulate `flush.console()` in
  `evaluate()` (#61).

* Added a `inject_funs()` function to create functions in the environment passed
  to the `envir` argument of `evaluate()`.

(wen)

Updated textproc/R-stringi to 1.1.2

(wen)

Update to 1.1.2
Remove BROKEN mark(build without Internet access)

Upstream changes:
## 1.1.2 (2016-09-30) **CRAN**

* [BUGFIX] round(), snprintf() is not C++98

-------------------------------------------------------------------------------

## 1.1.1 (2016-05-25) **CRAN**

* [BUGFIX] #214: allow a regex pattern like `.*`  to match an empty string.

* [BUGFIX] #210: `stri_replace_all_fixed(c("1", "NULL"), "NULL", NA)`
now results in `c("1", NA)`.

* [NEW FEATURE] #199: `stri_sub<-` now allows for ignoring `NA` locations
(a new `omit_na` argument added).

* [NEW FEATURE] #207: `stri_sub<-` now allows for substring insertions
(via `length=0`).

* [NEW FUNCTION] #124: `stri_subset<-` functions added.

* [NEW FEATURE] #216: `stri_detect`, `stri_subset`, `stri_subset<-` gained
a `negate` argument.

* [NEW FUNCTION] #175: `stri_join_list` concatenates all strings
in a list of character vectors. Useful with, e.g., `stri_extract_all_regex`,
`stri_extract_all_words` etc.

(wen)

Updated www/firefox-l10n to 50.1.0

(ryoon)

Update to 50.1.0

* SYnc with firefox-50.1.0

(ryoon)

Updated www/firefox to 50.1.0

(ryoon)

Update to 50.1.0

Changelog:
#CVE-2016-9894: Buffer overflow in SkiaGL
#CVE-2016-9899: Use-after-free while manipulating DOM events and audio elements
#CVE-2016-9895: CSP bypass using marquee tag
#CVE-2016-9896: Use-after-free with WebVR
#CVE-2016-9897: Memory corruption in libGLES
#CVE-2016-9898: Use-after-free in Editor while manipulating DOM subtrees
#CVE-2016-9900: Restricted external resources can be loaded by SVG images through data URLs
#CVE-2016-9904: Cross-origin information leak in shared atoms
#CVE-2016-9901: Data from Pocket server improperly sanitized before execution
#CVE-2016-9902: Pocket extension does not validate the origin of events
#CVE-2016-9903: XSS injection vulnerability in add-ons SDK
#CVE-2016-9080: Memory safety bugs fixed in Firefox 50.1
#CVE-2016-9893: Memory safety bugs fixed in Firefox 50.1 and Firefox ESR 45.6

(ryoon)

Add optional caching of extracted build options. As the number of users
of this feature has exploded over recent years, this avoids quadratic
complexity for many packages during scan and build phase of a bulk
build. Pbulk logic for exploiting this feature will be committed
separately. Over all, this saves ~66% for wm/xfce4-wm
with initially empty cache and ~90% when the cache is populated. Total
scan time can be cut in half.

(joerg)

Don't check pointer sign.

(joerg)